Wall clock time and date at job start Tue Mar 31 2020 21:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29951 * 126.28815 * 2 1 4 4 O 1.21300 * 110.24692 * 179.97438 * 3 2 1 5 5 C 1.33638 * 109.81537 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.55052 * 179.97438 * 5 4 3 7 7 C 1.53014 * 109.47066 * 270.02551 * 6 5 4 8 8 C 1.50697 * 109.47066 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99867 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00142 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00307 * 174.69672 * 10 8 7 12 12 C 1.52997 * 109.54090 * 304.08941 * 11 10 8 13 13 N 1.46494 * 109.47510 * 305.58374 * 12 11 10 14 14 C 1.36939 * 120.00418 * 175.02320 * 13 12 11 15 15 H 1.08006 * 119.99553 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00248 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99819 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99794 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47397 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47029 * 120.00077 * 18 16 14 21 21 H 1.48504 * 109.46783 * 239.99794 * 18 16 14 22 22 C 1.53172 * 109.54234 * 183.91361 * 11 10 8 23 23 C 1.53285 * 109.06629 * 297.02775 * 22 11 10 24 24 O 1.42903 * 109.45825 * 302.44829 * 23 22 11 25 25 C 1.42897 * 114.09830 * 61.15483 * 24 23 22 26 26 C 1.53086 * 109.41840 * 298.84156 * 25 24 23 27 27 N 1.31128 * 106.89664 * 359.76839 * 5 4 3 28 28 H 1.08997 * 109.47352 * 90.02117 * 1 2 3 29 29 H 1.08999 * 109.46894 * 210.02597 * 1 2 3 30 30 H 1.09001 * 109.47145 * 330.01716 * 1 2 3 31 31 H 1.08996 * 109.47047 * 30.02313 * 6 5 4 32 32 H 1.09000 * 109.47291 * 150.02848 * 6 5 4 33 33 H 1.08996 * 109.46993 * 299.99795 * 7 6 5 34 34 H 1.09000 * 109.46823 * 60.00011 * 7 6 5 35 35 H 0.97005 * 119.99886 * 354.69223 * 10 8 7 36 36 H 1.09008 * 109.47255 * 65.58339 * 12 11 10 37 37 H 1.09001 * 109.47399 * 185.57857 * 12 11 10 38 38 H 0.97004 * 119.99798 * 355.02949 * 13 12 11 39 39 H 0.97006 * 119.99611 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.52585 * 57.02199 * 22 11 10 41 41 H 1.09006 * 109.52096 * 177.20259 * 22 11 10 42 42 H 1.09002 * 109.45713 * 182.44932 * 23 22 11 43 43 H 1.08995 * 109.46204 * 62.45063 * 23 22 11 44 44 H 1.09004 * 109.48265 * 178.85444 * 25 24 23 45 45 H 1.09008 * 109.48849 * 58.83034 * 25 24 23 46 46 H 1.09001 * 109.52351 * 297.70119 * 26 25 24 47 47 H 1.09004 * 109.57433 * 177.54482 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4370 0.0003 7 6 5.2261 -1.7124 -1.4424 8 6 6.4928 -2.5287 -1.4424 9 8 7.0019 -2.8583 -0.3921 10 7 7.0600 -2.8926 -2.6096 11 6 8.3510 -3.5851 -2.6123 12 6 9.3843 -2.7444 -1.8597 13 7 9.4312 -1.3981 -2.4352 14 6 10.2131 -0.4334 -1.8579 15 1 10.7956 -0.6654 -0.9784 16 6 10.2579 0.8421 -2.4035 17 7 9.5485 1.1246 -3.4755 18 14 11.3252 2.1577 -1.6163 19 1 12.0171 1.5902 -0.4313 20 1 12.3329 2.6310 -2.5990 21 1 10.4733 3.2980 -1.1927 22 6 8.8161 -3.7965 -4.0563 23 6 7.8135 -4.7046 -4.7774 24 8 7.7003 -5.9426 -4.0728 25 6 7.2251 -5.8094 -2.7318 26 6 8.2029 -4.9478 -1.9286 27 7 2.3030 -1.0841 0.0047 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5136 31 1 5.5840 -0.8857 0.5145 32 1 4.6205 -2.3823 0.5135 33 1 4.4390 -2.2637 -1.9567 34 1 5.4026 -0.7671 -1.9556 35 1 6.6133 -2.6960 -3.4480 36 1 9.1043 -2.6805 -0.8081 37 1 10.3654 -3.2111 -1.9467 38 1 8.9082 -1.1898 -3.2252 39 1 9.5796 2.0161 -3.8566 40 1 8.8713 -2.8344 -4.5658 41 1 9.7993 -4.2671 -4.0571 42 1 8.1609 -4.8946 -5.7929 43 1 6.8400 -4.2155 -4.8118 44 1 7.1485 -6.7955 -2.2736 45 1 6.2438 -5.3348 -2.7391 46 1 9.1738 -5.4416 -1.8865 47 1 7.8210 -4.8083 -0.9172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502632906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:48 Heat of formation + Delta-G solvation = -6.266232 kcal Electronic energy + Delta-G solvation = -30451.272425 eV Core-core repulsion = 26251.809577 eV Total energy + Delta-G solvation = -4199.462848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.66634 -40.54667 -38.52051 -36.25105 -35.88750 -34.60221 -33.68801 -32.13260 -31.17227 -31.03048 -30.39851 -29.29405 -26.66876 -25.72290 -23.76868 -23.61782 -23.32361 -21.65085 -21.42090 -20.51569 -19.05133 -18.25165 -17.53330 -17.25828 -17.05782 -16.07670 -15.94075 -15.59542 -15.44237 -14.91318 -14.61648 -14.37975 -14.17885 -13.91964 -13.82524 -13.63512 -13.29951 -13.11733 -12.93503 -12.76307 -12.52967 -12.43790 -12.39090 -12.23443 -11.83754 -11.56808 -11.44436 -11.27404 -11.19588 -11.10938 -10.92205 -10.83636 -10.53957 -10.34354 -10.04853 -10.01536 -9.73068 -9.55728 -9.31879 -8.82379 -8.61236 -6.88786 -5.77488 -3.03800 1.03354 2.07687 2.68328 2.93003 3.37678 3.43780 3.50551 3.51952 3.58055 3.92168 3.93684 4.58533 4.61981 4.76965 4.81291 4.92508 4.99263 5.06332 5.06768 5.10980 5.12805 5.19085 5.27090 5.38451 5.42149 5.45668 5.58884 5.67210 5.71160 5.73034 5.75082 5.85915 5.91835 5.92062 6.03501 6.07849 6.21790 6.28694 6.43918 6.51897 6.83699 7.02291 7.24017 7.72609 7.78996 8.06684 8.42099 8.51938 9.54090 10.10609 10.46436 11.45642 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007322 B = 0.004139 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.005299 B = 6763.132108 C = 9779.091127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.162 3.838 3 N -0.387 5.387 4 O 0.081 5.919 5 C 0.194 3.806 6 C -0.012 4.012 7 C -0.139 4.139 8 C 0.532 3.468 9 O -0.532 6.532 10 N -0.712 5.712 11 C 0.175 3.825 12 C 0.142 3.858 13 N -0.725 5.725 14 C -0.230 4.230 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.936 5.936 18 Si 0.904 3.096 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.292 1.292 22 C -0.155 4.155 23 C 0.061 3.939 24 O -0.386 6.386 25 C 0.066 3.934 26 C -0.163 4.163 27 N -0.486 5.486 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.396 0.604 36 H 0.051 0.949 37 H 0.020 0.980 38 H 0.381 0.619 39 H 0.253 0.747 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.563 -10.362 1.271 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.096 5.096 4 O 0.024 5.976 5 C -0.026 4.026 6 C -0.051 4.051 7 C -0.181 4.181 8 C 0.318 3.682 9 O -0.409 6.409 10 N -0.364 5.364 11 C 0.089 3.911 12 C 0.014 3.986 13 N -0.369 5.369 14 C -0.361 4.361 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.585 5.585 18 Si 0.735 3.265 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.193 4.193 23 C -0.016 4.016 24 O -0.305 6.305 25 C -0.011 4.011 26 C -0.202 4.202 27 N -0.221 5.221 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.230 0.770 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.215 0.785 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.652 -10.169 2.084 17.956 hybrid contribution 0.349 1.432 -0.257 1.496 sum -14.303 -8.737 1.827 16.860 Atomic orbital electron populations 1.20112 0.83069 1.04519 1.04219 1.25910 1.00567 0.83711 1.00847 1.74666 0.89484 1.24022 1.21447 1.85343 1.22148 1.24863 1.65295 1.28886 0.96946 0.82134 0.94651 1.19983 0.87828 0.98845 0.98442 1.21615 0.96887 1.02602 0.96958 1.19977 0.85123 0.79144 0.83948 1.90649 1.63972 1.55027 1.31225 1.45891 1.22068 1.60054 1.08367 1.20577 0.83545 0.91338 0.95599 1.21081 0.93845 0.86461 0.97254 1.42210 1.55156 1.05858 1.33695 1.19263 1.18575 0.90294 1.08005 0.91317 1.24657 1.00653 0.97478 0.98158 1.69645 1.44888 1.20583 1.23426 0.86158 0.79811 0.82144 0.78374 1.20607 1.22003 1.21939 1.22480 1.00385 1.01519 0.94954 1.22633 0.97954 0.85169 0.95826 1.87899 1.87122 1.29873 1.25580 1.22511 0.96075 1.00102 0.82385 1.22555 1.01168 0.94999 1.01471 1.71909 0.99720 1.29378 1.21066 0.89394 0.89123 0.89618 0.86671 0.86471 0.88623 0.87572 0.77030 0.93133 0.96275 0.78510 0.93735 0.89154 0.89542 0.88846 0.93563 0.89317 0.93479 0.90465 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.10 16 2 C 0.16 2.00 8.22 -156.37 -1.28 0.72 16 3 N -0.39 -5.52 12.16 30.90 0.38 -5.14 16 4 O 0.08 1.16 11.31 18.11 0.20 1.37 16 5 C 0.19 2.45 7.77 -13.06 -0.10 2.35 16 6 C -0.01 -0.13 5.13 -27.88 -0.14 -0.28 16 7 C -0.14 -1.60 5.68 -27.88 -0.16 -1.76 16 8 C 0.53 7.68 7.24 -10.99 -0.08 7.60 16 9 O -0.53 -9.15 12.29 5.55 0.07 -9.08 16 10 N -0.71 -9.72 3.75 -47.44 -0.18 -9.90 16 11 C 0.18 2.62 0.32 -131.64 -0.04 2.58 16 12 C 0.14 2.81 4.79 -4.05 -0.02 2.79 16 13 N -0.72 -17.27 5.21 -59.91 -0.31 -17.58 16 14 C -0.23 -6.31 9.99 -15.06 -0.15 -6.46 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 17 N -0.94 -27.23 13.06 55.49 0.72 -26.51 16 18 Si 0.90 22.36 29.55 -169.99 -5.02 17.34 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 C -0.16 -2.14 4.84 -26.49 -0.13 -2.26 16 23 C 0.06 0.70 6.67 37.31 0.25 0.95 16 24 O -0.39 -4.96 10.77 -35.23 -0.38 -5.34 16 25 C 0.07 0.77 6.68 37.20 0.25 1.02 16 26 C -0.16 -2.19 4.82 -26.60 -0.13 -2.32 16 27 N -0.49 -6.29 11.55 -9.87 -0.11 -6.41 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.12 1.40 8.10 -51.93 -0.42 0.98 16 32 H 0.12 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.40 4.59 7.41 -40.82 -0.30 4.29 16 36 H 0.05 1.11 6.26 -51.92 -0.32 0.78 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.38 9.27 6.51 -40.82 -0.27 9.00 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.09 1.38 7.22 -51.93 -0.37 1.00 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.47 7.01 -51.93 -0.36 0.11 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.53 7.75 -51.92 -0.40 0.13 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.39 6.26 -51.93 -0.32 1.06 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -33.32 381.29 -7.32 -40.64 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.97 Total: 10.52 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -1.46 Total: 4.35 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: 0.50 Total: -65.53 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.11 Total: -13.05 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.32 -7.32 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502632906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.369 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds