Wall clock time and date at job start Tue Mar 31 2020 20:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32163 * 119.14454 * 2 1 4 4 C 1.32367 * 120.60570 * 180.26487 * 3 2 1 5 5 C 1.47500 * 120.51152 * 179.71869 * 4 3 2 6 6 O 1.21597 * 119.99485 * 173.39400 * 5 4 3 7 7 N 1.34776 * 119.99780 * 353.39517 * 5 4 3 8 8 C 1.46494 * 120.00203 * 354.14366 * 7 5 4 9 9 C 1.46503 * 119.99443 * 174.41847 * 7 5 4 10 10 C 1.53002 * 109.46950 * 90.00190 * 9 7 5 11 11 O 1.42903 * 109.46988 * 64.99308 * 10 9 7 12 12 C 1.42902 * 113.99836 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47195 * 180.02562 * 12 11 10 14 14 N 1.46493 * 109.47181 * 64.99770 * 13 12 11 15 15 C 1.36939 * 120.00183 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99800 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00067 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99843 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00260 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46819 * 90.00389 * 19 17 15 21 21 H 1.48495 * 109.47033 * 210.00495 * 19 17 15 22 22 H 1.48502 * 109.47035 * 330.00652 * 19 17 15 23 23 C 1.46679 * 118.97692 * 359.44611 * 4 3 2 24 24 O 1.21865 * 120.78250 * 180.25513 * 23 4 3 25 25 N 1.35149 * 118.43506 * 0.27114 * 23 4 3 26 26 H 0.96998 * 120.37262 * 180.02562 * 25 23 4 27 27 C 1.34899 * 119.26480 * 0.02562 * 25 23 4 28 28 C 1.50699 * 119.50206 * 179.97438 * 27 25 23 29 29 H 1.08997 * 109.47032 * 270.29770 * 1 2 3 30 30 H 1.09000 * 109.46866 * 30.29591 * 1 2 3 31 31 H 1.08998 * 109.47063 * 150.29509 * 1 2 3 32 32 H 1.09004 * 109.46730 * 85.11204 * 8 7 5 33 33 H 1.08996 * 109.47382 * 205.11485 * 8 7 5 34 34 H 1.08999 * 109.47073 * 325.11722 * 8 7 5 35 35 H 1.09000 * 109.46600 * 209.99425 * 9 7 5 36 36 H 1.08995 * 109.47443 * 329.99962 * 9 7 5 37 37 H 1.08994 * 109.47048 * 184.99669 * 10 9 7 38 38 H 1.08997 * 109.47009 * 305.00028 * 10 9 7 39 39 H 1.08998 * 109.47370 * 300.00475 * 12 11 10 40 40 H 1.08997 * 109.47194 * 60.00207 * 12 11 10 41 41 H 1.08995 * 109.47062 * 185.00584 * 13 12 11 42 42 H 1.09003 * 109.46515 * 305.00263 * 13 12 11 43 43 H 0.97001 * 120.00340 * 0.02562 * 14 13 12 44 44 H 0.96999 * 119.99863 * 179.97438 * 18 17 15 45 45 H 1.09004 * 109.46723 * 0.02562 * 28 27 25 46 46 H 1.08994 * 109.46939 * 119.99943 * 28 27 25 47 47 H 1.09000 * 109.46928 * 240.00315 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1881 -0.0053 5 6 4.1901 2.4775 -0.0115 6 8 5.4003 2.5013 0.1049 7 7 3.5031 3.6292 -0.1461 8 6 2.0634 3.5963 -0.4145 9 6 4.1975 4.9140 -0.0300 10 6 4.6979 5.3497 -1.4087 11 8 3.5806 5.5995 -2.2638 12 6 3.9399 6.0153 -3.5830 13 6 2.6720 6.2536 -4.4057 14 7 1.9238 7.3766 -3.8357 15 6 0.7457 7.7756 -4.4084 16 1 0.3684 7.2626 -5.2806 17 6 0.0371 8.8401 -3.8686 18 7 -1.0956 9.2233 -4.4188 19 14 0.6900 9.7280 -2.3603 20 1 1.5652 10.8495 -2.7864 21 1 -0.4475 10.2609 -1.5685 22 1 1.4716 8.7792 -1.5271 23 6 4.2170 -0.0765 0.0013 24 8 5.4356 -0.0838 0.0014 25 7 3.5184 -1.2334 0.0069 26 1 3.9813 -2.0859 0.0117 27 6 2.1701 -1.1897 0.0058 28 6 1.3858 -2.4765 0.0114 29 1 -0.3633 0.0053 1.0276 30 1 -0.3633 0.8873 -0.5184 31 1 -0.3633 -0.8926 -0.5092 32 1 1.5204 3.5062 0.5263 33 1 1.7666 4.5159 -0.9187 34 1 1.8319 2.7421 -1.0508 35 1 3.5102 5.6643 0.3608 36 1 5.0448 4.8092 0.6476 37 1 5.2901 6.2593 -1.3095 38 1 5.3143 4.5597 -1.8378 39 1 4.5162 6.9389 -3.5286 40 1 4.5408 5.2396 -4.0574 41 1 2.9451 6.4841 -5.4354 42 1 2.0525 5.3570 -4.3861 43 1 2.2629 7.8377 -3.0525 44 1 -1.5910 9.9669 -4.0414 45 1 2.0743 -3.3215 0.0164 46 1 0.7574 -2.5150 0.9011 47 1 0.7586 -2.5235 -0.8788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508177629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:01 Heat of formation + Delta-G solvation = -39.684397 kcal Electronic energy + Delta-G solvation = -29791.648047 eV Core-core repulsion = 25590.736079 eV Total energy + Delta-G solvation = -4200.911968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.14654 -39.69858 -38.32271 -37.73329 -35.91748 -35.43324 -34.44415 -33.50314 -31.58280 -30.38626 -29.41309 -28.00124 -27.26544 -26.14495 -24.98045 -23.97028 -23.21607 -22.37415 -21.06803 -20.10413 -19.04665 -18.39383 -17.56912 -17.04828 -16.67555 -16.43177 -16.31587 -15.80072 -15.45947 -15.25130 -14.59569 -14.50552 -14.34829 -14.17260 -13.85642 -13.73204 -13.55371 -13.41716 -13.15382 -12.87909 -12.70780 -12.55570 -12.43495 -12.37162 -12.14985 -11.92184 -11.83529 -11.75038 -11.46924 -11.14392 -10.99338 -10.80013 -10.44261 -10.31186 -10.04098 -9.53433 -9.46013 -9.25323 -8.83927 -8.62606 -8.33949 -7.14288 -5.70017 -3.04112 -0.23586 1.29513 1.98035 2.46017 2.93023 3.39976 3.44417 3.49888 3.51515 3.53450 3.75864 3.85429 3.98777 4.18525 4.57934 4.64127 4.67131 4.80485 5.03388 5.07635 5.17778 5.20307 5.26273 5.34851 5.40522 5.46059 5.55693 5.60118 5.66696 5.67976 5.70889 5.80760 5.88234 5.92011 5.95366 5.96168 6.08323 6.30940 6.56821 6.58470 6.72340 7.11818 7.33454 7.41392 7.55541 8.06672 8.14380 8.49245 9.29684 10.02230 10.23586 11.48597 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.002780 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.244289 B =10069.133990 C =11126.325847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.033 4.033 3 N -0.338 5.338 4 C 0.006 3.994 5 C 0.577 3.423 6 O -0.517 6.517 7 N -0.586 5.586 8 C 0.089 3.911 9 C 0.121 3.879 10 C 0.043 3.957 11 O -0.373 6.373 12 C 0.055 3.945 13 C 0.160 3.840 14 N -0.751 5.751 15 C -0.240 4.240 16 H 0.089 0.911 17 C 0.002 3.998 18 N -0.937 5.937 19 Si 0.884 3.116 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.273 1.273 23 C 0.498 3.502 24 O -0.485 6.485 25 N -0.586 5.586 26 H 0.421 0.579 27 C 0.154 3.846 28 C -0.128 4.128 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.033 0.967 43 H 0.364 0.636 44 H 0.258 0.742 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.377 -26.139 12.364 29.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.159 4.159 3 N -0.055 5.055 4 C -0.162 4.162 5 C 0.363 3.637 6 O -0.392 6.392 7 N -0.319 5.319 8 C -0.053 4.053 9 C -0.001 4.001 10 C -0.035 4.035 11 O -0.292 6.292 12 C -0.022 4.022 13 C 0.033 3.967 14 N -0.397 5.397 15 C -0.370 4.370 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.586 5.586 19 Si 0.714 3.286 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.199 1.199 23 C 0.290 3.710 24 O -0.357 6.357 25 N -0.222 5.222 26 H 0.261 0.739 27 C 0.038 3.962 28 C -0.185 4.185 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.197 0.803 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.867 -25.337 12.338 28.786 hybrid contribution 1.142 -0.445 0.889 1.514 sum 7.009 -25.782 13.227 29.813 Atomic orbital electron populations 1.20560 0.86675 1.04077 1.03164 1.20315 0.98182 0.85718 1.11722 1.68124 1.08265 1.28425 1.00715 1.23822 0.88960 0.93776 1.09632 1.17120 0.86216 0.82160 0.78222 1.90867 1.12513 1.86191 1.49600 1.47584 1.10466 1.04689 1.69137 1.22149 0.77949 1.04046 1.01163 1.21603 0.98430 0.84116 0.95969 1.22892 0.89751 0.99390 0.91497 1.87990 1.30475 1.88173 1.22604 1.22829 0.98361 0.97718 0.83320 1.20657 0.90244 0.91611 0.94212 1.42634 1.25673 1.36894 1.34494 1.19072 0.96414 1.11729 1.09778 0.89336 1.24652 0.96866 0.98823 0.98954 1.69711 1.16020 1.30324 1.42515 0.86535 0.78020 0.79954 0.84104 1.21298 1.21845 1.19869 1.19048 0.88388 0.83937 0.79671 1.91058 1.11441 1.85313 1.47886 1.43767 1.06401 1.11971 1.60080 0.73897 1.21586 0.83465 0.99067 0.92059 1.21220 1.00514 0.91321 1.05486 0.90660 0.89759 0.90705 0.92615 0.89992 0.89849 0.89060 0.88592 0.92590 0.93074 0.93502 0.93560 0.94263 0.94862 0.80319 0.93173 0.90360 0.88053 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 9.65 36.01 0.35 -0.06 16 2 C -0.03 -0.25 6.70 -83.18 -0.56 -0.81 16 3 N -0.34 -3.71 6.26 -4.84 -0.03 -3.74 16 4 C 0.01 0.07 6.75 -80.46 -0.54 -0.47 16 5 C 0.58 9.13 7.64 -12.49 -0.10 9.03 16 6 O -0.52 -9.73 15.17 -15.07 -0.23 -9.96 16 7 N -0.59 -8.39 2.84 -182.83 -0.52 -8.91 16 8 C 0.09 1.18 8.90 59.84 0.53 1.71 16 9 C 0.12 1.63 5.75 -4.04 -0.02 1.60 16 10 C 0.04 0.62 6.28 37.16 0.23 0.85 16 11 O -0.37 -6.43 9.18 -35.23 -0.32 -6.76 16 12 C 0.05 0.91 6.07 37.16 0.23 1.14 16 13 C 0.16 3.24 6.65 -4.04 -0.03 3.21 16 14 N -0.75 -18.56 5.35 -59.91 -0.32 -18.88 16 15 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 17 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 18 N -0.94 -29.87 13.97 55.49 0.78 -29.09 16 19 Si 0.88 22.59 27.74 -169.99 -4.71 17.87 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.27 -6.62 6.52 56.52 0.37 -6.25 16 23 C 0.50 6.37 7.92 -12.69 -0.10 6.27 16 24 O -0.49 -8.12 16.42 -15.31 -0.25 -8.37 16 25 N -0.59 -4.29 5.29 -9.45 -0.05 -4.34 16 26 H 0.42 1.82 8.64 -40.82 -0.35 1.47 16 27 C 0.15 0.84 6.78 -81.98 -0.56 0.28 16 28 C -0.13 -0.11 8.83 36.01 0.32 0.21 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.16 6.43 -51.93 -0.33 -0.17 16 32 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 33 H 0.08 1.23 7.20 -51.93 -0.37 0.86 16 34 H 0.08 1.09 5.80 -51.93 -0.30 0.79 16 35 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 36 H 0.10 1.21 7.50 -51.93 -0.39 0.82 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.36 8.90 5.53 -40.82 -0.23 8.67 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.08 -0.04 7.90 -51.93 -0.41 -0.45 16 46 H 0.10 -0.03 8.09 -51.93 -0.42 -0.45 16 47 H 0.10 -0.01 7.37 -51.93 -0.38 -0.39 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -39.71 388.89 -7.30 -47.01 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.00 Total: 3.49 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: -0.50 Total: 15.82 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.14 Total: -64.96 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.80 Total: -25.09 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.71 -7.30 -47.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508177629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.327 kcal (2) G-P(sol) polarization free energy of solvation -39.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds