Wall clock time and date at job start Tue Mar 31 2020 22:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.33693 * 126.27135 * 90.02550 * 3 2 1 5 5 C 1.30611 * 108.99480 * 179.97438 * 4 3 2 6 6 O 1.33668 * 109.15469 * 359.97438 * 5 4 3 7 7 C 1.35338 * 107.68524 * 359.76134 * 6 5 4 8 8 C 1.46715 * 126.64591 * 180.25506 * 7 6 5 9 9 O 1.21693 * 120.00116 * 180.14970 * 8 7 6 10 10 N 1.34779 * 120.00052 * 0.15177 * 8 7 6 11 11 C 1.46501 * 119.99853 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46656 * 179.97438 * 11 10 8 13 13 C 1.53009 * 109.47002 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46813 * 304.99491 * 13 12 11 15 15 C 1.53000 * 109.47136 * 184.99918 * 13 12 11 16 16 N 1.46898 * 109.47112 * 64.99720 * 13 12 11 17 17 C 1.46898 * 111.00270 * 205.00181 * 16 13 12 18 18 C 1.50687 * 109.47555 * 180.02562 * 17 16 13 19 19 O 1.21295 * 120.00381 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00500 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00328 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99701 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99635 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00146 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99478 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47552 * 59.99934 * 25 23 21 27 27 H 1.48501 * 109.46845 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47034 * 299.99900 * 25 23 21 29 29 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 34 34 H 1.08002 * 125.42310 * 180.02562 * 5 4 3 35 35 H 0.96996 * 119.99810 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47145 * 299.99222 * 11 10 8 37 37 H 1.08996 * 109.47822 * 59.99842 * 11 10 8 38 38 H 1.08999 * 109.47167 * 299.99327 * 12 11 10 39 39 H 1.08998 * 109.47323 * 59.99929 * 12 11 10 40 40 H 1.08999 * 109.47325 * 59.99697 * 15 13 12 41 41 H 1.08994 * 109.46968 * 179.97438 * 15 13 12 42 42 H 1.08997 * 109.46912 * 299.99955 * 15 13 12 43 43 H 1.00903 * 110.99803 * 81.04306 * 16 13 12 44 44 H 1.09005 * 109.46856 * 300.00339 * 17 16 13 45 45 H 1.09001 * 109.46941 * 59.99284 * 17 16 13 46 46 H 0.97004 * 119.99442 * 359.97438 * 20 18 17 47 47 H 0.97005 * 119.99607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2965 2.1664 1.0779 5 6 2.7126 3.3421 0.6900 6 8 2.7275 3.3833 -0.6460 7 6 2.3073 2.1793 -1.0992 8 6 2.1707 1.7705 -2.5016 9 8 1.7766 0.6517 -2.7737 10 7 2.4817 2.6340 -3.4886 11 6 2.3447 2.2259 -4.8889 12 6 2.7587 3.3832 -5.8001 13 6 2.6162 2.9569 -7.2627 14 1 3.1877 2.0444 -7.4324 15 6 3.1469 4.0674 -8.1716 16 7 1.1999 2.7113 -7.5654 17 6 1.0563 1.7746 -8.6879 18 6 -0.4067 1.5481 -8.9691 19 8 -1.2472 2.1111 -8.2999 20 7 -0.7814 0.7190 -9.9635 21 6 -2.1125 0.5125 -10.2189 22 1 -2.8608 1.0145 -9.6235 23 6 -2.4987 -0.3418 -11.2445 24 7 -1.5881 -0.9522 -11.9691 25 14 -4.3123 -0.6226 -11.5929 26 1 -4.9554 0.6698 -11.9413 27 1 -4.4574 -1.5699 -12.7273 28 1 -4.9658 -1.1914 -10.3868 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9997 4.1518 1.3445 35 1 2.7955 3.5258 -3.2717 36 1 2.9852 1.3650 -5.0808 37 1 1.3072 1.9590 -5.0899 38 1 2.1179 4.2439 -5.6082 39 1 3.7961 3.6506 -5.5993 40 1 4.1978 4.2497 -7.9469 41 1 3.0459 3.7635 -9.2134 42 1 2.5755 4.9799 -8.0018 43 1 0.7147 3.5762 -7.7517 44 1 1.5356 2.1924 -9.5733 45 1 1.5288 0.8262 -8.4324 46 1 -0.1093 0.2685 -10.4984 47 1 -1.8578 -1.5483 -12.6853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567229459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:15 Heat of formation + Delta-G solvation = -61.827062 kcal Electronic energy + Delta-G solvation = -28464.498626 eV Core-core repulsion = 24262.626480 eV Total energy + Delta-G solvation = -4201.872146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.79118 -39.72656 -38.47406 -37.15798 -36.11338 -34.85004 -33.87994 -33.21459 -31.69228 -31.12467 -30.16992 -28.71296 -26.32907 -25.11726 -24.08244 -23.86453 -22.99706 -21.49071 -21.07709 -20.46827 -19.25514 -18.46732 -17.86696 -17.22619 -16.82855 -16.22495 -16.05612 -15.73322 -15.25512 -15.14692 -14.73679 -14.57172 -14.49412 -14.09323 -13.98014 -13.70692 -13.62549 -13.36486 -13.08352 -12.93330 -12.77464 -12.17474 -11.96498 -11.74769 -11.58184 -11.55190 -11.45898 -11.39842 -11.26717 -11.24496 -11.16691 -11.00271 -10.90284 -10.42625 -10.28123 -10.19320 -9.48032 -9.44746 -9.10833 -8.45619 -8.04427 -7.93844 -6.39767 -3.80441 0.50732 2.09325 2.11796 2.86193 2.96217 3.21853 3.27312 3.31930 3.66716 3.92961 4.09572 4.32420 4.35923 4.45110 4.65451 4.92097 5.02175 5.07654 5.09916 5.17373 5.20464 5.21999 5.27632 5.28183 5.37854 5.44502 5.51071 5.65332 5.74580 5.77281 5.80486 5.82809 5.94948 5.98913 6.05137 6.06986 6.11007 6.17122 6.25538 6.29742 7.05888 7.21383 7.29888 7.56946 7.65444 7.84883 8.08131 8.63313 9.19859 9.56387 10.07937 10.77911 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012481 B = 0.002108 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.843870 B =13278.063110 C =14996.198764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C 0.083 3.917 4 N -0.491 5.491 5 C 0.198 3.802 6 O -0.193 6.193 7 C -0.111 4.111 8 C 0.604 3.396 9 O -0.504 6.504 10 N -0.717 5.717 11 C 0.121 3.879 12 C -0.116 4.116 13 C 0.085 3.915 14 H 0.081 0.919 15 C -0.183 4.183 16 N -0.663 5.663 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.256 0.744 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.350 0.650 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.111 9.423 19.601 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C -0.041 4.041 4 N -0.220 5.220 5 C -0.027 4.027 6 O -0.079 6.079 7 C -0.166 4.166 8 C 0.389 3.611 9 O -0.381 6.381 10 N -0.368 5.368 11 C -0.001 4.001 12 C -0.154 4.154 13 C -0.026 4.026 14 H 0.099 0.901 15 C -0.242 4.242 16 N -0.295 5.295 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.272 0.728 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.170 0.830 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.103 8.234 20.709 26.373 hybrid contribution 0.163 1.030 -1.766 2.051 sum 14.266 9.265 18.943 25.460 Atomic orbital electron populations 1.21647 0.93559 1.02564 1.02091 1.20196 0.96873 0.87583 1.04449 1.22111 0.97376 0.98344 0.86285 1.70347 1.16860 1.03291 1.31511 1.28330 0.97371 0.97615 0.79411 1.84479 1.64981 1.33941 1.24495 1.23041 1.12036 0.85094 0.96479 1.16301 0.78498 0.85095 0.81253 1.90916 1.46094 1.19453 1.81646 1.45963 1.67109 1.16717 1.06964 1.21516 1.04269 0.97228 0.77095 1.21758 1.01062 0.98186 0.94416 1.21500 0.89934 0.97937 0.93265 0.90118 1.22510 1.01552 0.99585 1.00529 1.60205 1.09702 1.17823 1.41804 1.21698 0.96568 0.97494 0.92450 1.19819 0.89531 0.84351 0.83711 1.90525 1.52801 1.52474 1.50960 1.41860 1.08432 1.40159 1.29600 1.19649 0.83198 1.25005 1.15014 0.88003 1.25260 1.00036 0.96482 0.96182 1.69604 1.33629 1.29986 1.21137 0.85920 0.82161 0.78219 0.77931 1.19951 1.20994 1.19859 0.92157 0.91477 0.92786 0.88051 0.90084 0.72832 0.76445 0.91434 0.88747 0.91015 0.91408 0.92218 0.92281 0.92291 0.82996 0.93861 0.89579 0.77479 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.05 -0.57 5.93 -27.88 -0.17 -0.73 16 3 C 0.08 0.94 6.41 -82.46 -0.53 0.41 16 4 N -0.49 -5.02 11.26 -10.88 -0.12 -5.14 16 5 C 0.20 1.36 13.21 52.24 0.69 2.05 16 6 O -0.19 -1.67 10.57 4.43 0.05 -1.63 16 7 C -0.11 -1.25 7.18 -36.84 -0.26 -1.51 16 8 C 0.60 7.63 7.79 -12.84 -0.10 7.53 16 9 O -0.50 -7.90 14.79 5.19 0.08 -7.83 16 10 N -0.72 -7.42 5.55 -61.60 -0.34 -7.76 16 11 C 0.12 1.38 5.56 -4.04 -0.02 1.36 16 12 C -0.12 -1.05 5.01 -26.73 -0.13 -1.19 16 13 C 0.08 0.91 2.59 -67.71 -0.18 0.74 16 14 H 0.08 0.86 7.80 -51.93 -0.40 0.45 16 15 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 16 N -0.66 -9.94 5.33 -107.99 -0.58 -10.52 16 17 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 18 C 0.44 10.36 7.82 -10.99 -0.09 10.27 16 19 O -0.58 -15.83 15.78 5.54 0.09 -15.74 16 20 N -0.56 -14.35 5.29 -10.97 -0.06 -14.41 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.18 6.45 -51.93 -0.33 0.85 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.26 0.30 8.06 -52.49 -0.42 -0.13 16 35 H 0.40 3.13 8.27 -40.82 -0.34 2.79 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.41 7.75 -51.93 -0.40 1.01 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 42 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 43 H 0.35 5.50 8.17 -39.29 -0.32 5.18 16 44 H 0.04 0.66 7.44 -51.93 -0.39 0.28 16 45 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 47 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -34.61 400.26 -6.56 -41.16 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -7.05 Total: 14.31 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -0.35 Total: 9.25 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.37 Total: -61.81 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.21 Total: -25.20 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.61 -6.56 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567229459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.663 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds