Wall clock time and date at job start Tue Mar 31 2020 22:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.33693 * 126.27135 * 90.02550 * 3 2 1 5 5 C 1.30611 * 108.99480 * 179.97438 * 4 3 2 6 6 O 1.33668 * 109.15469 * 359.97438 * 5 4 3 7 7 C 1.35338 * 107.68524 * 359.76134 * 6 5 4 8 8 C 1.46715 * 126.64591 * 180.25506 * 7 6 5 9 9 O 1.21693 * 120.00116 * 180.14970 * 8 7 6 10 10 N 1.34779 * 120.00052 * 0.15177 * 8 7 6 11 11 C 1.46501 * 119.99853 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46656 * 179.97438 * 11 10 8 13 13 C 1.53009 * 109.47002 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.46957 * 54.99928 * 13 12 11 15 15 C 1.53000 * 109.47001 * 174.99612 * 13 12 11 16 16 N 1.46900 * 109.46931 * 294.99598 * 13 12 11 17 17 C 1.46898 * 110.99699 * 154.99659 * 16 13 12 18 18 C 1.50708 * 109.47102 * 180.02562 * 17 16 13 19 19 O 1.21287 * 119.99935 * 0.02562 * 18 17 16 20 20 N 1.34769 * 119.99940 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99843 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99823 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00053 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00465 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00068 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47111 * 89.99883 * 25 23 21 27 27 H 1.48495 * 109.47243 * 209.99846 * 25 23 21 28 28 H 1.48503 * 109.47193 * 330.00114 * 25 23 21 29 29 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 34 34 H 1.08002 * 125.42310 * 180.02562 * 5 4 3 35 35 H 0.96996 * 119.99810 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47145 * 299.99222 * 11 10 8 37 37 H 1.08996 * 109.47822 * 59.99842 * 11 10 8 38 38 H 1.08999 * 109.47167 * 299.99327 * 12 11 10 39 39 H 1.08998 * 109.47323 * 59.99929 * 12 11 10 40 40 H 1.08995 * 109.47495 * 300.00100 * 15 13 12 41 41 H 1.09003 * 109.46667 * 60.00408 * 15 13 12 42 42 H 1.09002 * 109.46951 * 179.97438 * 15 13 12 43 43 H 1.00893 * 111.00332 * 278.95541 * 16 13 12 44 44 H 1.08996 * 109.47792 * 300.00344 * 17 16 13 45 45 H 1.09000 * 109.47168 * 60.00799 * 17 16 13 46 46 H 0.97000 * 120.00070 * 0.02562 * 20 18 17 47 47 H 0.96992 * 120.00535 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2965 2.1664 1.0779 5 6 2.7126 3.3421 0.6900 6 8 2.7275 3.3833 -0.6460 7 6 2.3073 2.1793 -1.0992 8 6 2.1707 1.7705 -2.5016 9 8 1.7766 0.6517 -2.7737 10 7 2.4817 2.6340 -3.4886 11 6 2.3447 2.2259 -4.8889 12 6 2.7587 3.3832 -5.8001 13 6 2.6162 2.9569 -7.2627 14 1 1.6002 2.6051 -7.4413 15 6 2.9098 4.1512 -8.1729 16 7 3.5671 1.8752 -7.5522 17 6 3.1017 1.0522 -8.6764 18 6 4.1001 -0.0448 -8.9431 19 8 5.1005 -0.1326 -8.2631 20 7 3.8811 -0.9282 -9.9370 21 6 4.7891 -1.9264 -10.1792 22 1 5.6800 -2.0046 -9.5738 23 6 4.5637 -2.8369 -11.2044 24 7 5.4343 -3.7935 -11.4369 25 14 3.0232 -2.7012 -12.2521 26 1 3.2957 -1.8287 -13.4224 27 1 2.6248 -4.0518 -12.7237 28 1 1.9243 -2.1153 -11.4431 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9997 4.1518 1.3445 35 1 2.7955 3.5258 -3.2717 36 1 2.9852 1.3650 -5.0808 37 1 1.3072 1.9590 -5.0899 38 1 2.1179 4.2439 -5.6082 39 1 3.7961 3.6506 -5.5993 40 1 2.2044 4.9538 -7.9581 41 1 3.9259 4.5030 -7.9942 42 1 2.8088 3.8474 -9.2148 43 1 4.4896 2.2427 -7.7306 44 1 2.1359 0.6117 -8.4290 45 1 2.9999 1.6751 -9.5651 46 1 3.0812 -0.8577 -10.4811 47 1 5.2771 -4.4288 -12.1527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567229460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:19 Heat of formation + Delta-G solvation = -54.593995 kcal Electronic energy + Delta-G solvation = -28485.596022 eV Core-core repulsion = 24284.037525 eV Total energy + Delta-G solvation = -4201.558497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.80554 -39.75594 -38.64648 -37.27170 -36.13933 -34.89589 -33.93954 -33.24354 -31.83995 -31.51840 -30.22410 -28.77057 -26.51843 -25.15345 -24.05481 -23.77678 -23.00412 -21.51683 -21.12670 -20.51653 -19.37920 -18.56938 -18.26085 -17.24354 -16.84265 -16.26490 -16.10850 -15.74741 -15.38257 -15.17528 -14.84025 -14.77769 -14.53618 -14.14034 -14.10253 -13.66977 -13.46643 -13.34057 -13.15579 -12.96903 -12.84372 -12.38786 -12.22364 -11.95544 -11.79965 -11.69464 -11.51936 -11.44659 -11.36815 -11.26417 -11.18552 -11.15409 -10.97849 -10.58643 -10.30737 -9.96266 -9.55989 -9.47194 -9.13303 -8.59257 -8.18769 -8.12916 -6.29646 -3.81069 0.49108 2.07656 2.10484 2.83862 2.93656 3.03852 3.07179 3.15916 3.65318 3.75556 4.05771 4.11844 4.34159 4.42973 4.58821 4.80690 4.90154 5.00436 5.04853 5.06967 5.16590 5.17835 5.21453 5.22990 5.30306 5.41053 5.45269 5.55463 5.64768 5.68561 5.74104 5.78683 5.83345 5.90946 5.93887 5.97630 6.01679 6.05144 6.12662 6.21539 7.03388 7.08652 7.27731 7.55566 7.59709 7.82300 8.16083 8.61120 8.96514 9.43902 9.84158 10.83523 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.002083 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.411038 B =13436.040157 C =14637.206610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C 0.083 3.917 4 N -0.491 5.491 5 C 0.198 3.802 6 O -0.193 6.193 7 C -0.112 4.112 8 C 0.604 3.396 9 O -0.504 6.504 10 N -0.717 5.717 11 C 0.121 3.879 12 C -0.116 4.116 13 C 0.085 3.915 14 H 0.081 0.919 15 C -0.183 4.183 16 N -0.663 5.663 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.256 0.744 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.352 0.648 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.269 19.883 18.598 29.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.093 4.093 3 C -0.041 4.041 4 N -0.220 5.220 5 C -0.027 4.027 6 O -0.079 6.079 7 C -0.167 4.167 8 C 0.389 3.611 9 O -0.381 6.381 10 N -0.368 5.368 11 C -0.001 4.001 12 C -0.155 4.155 13 C -0.026 4.026 14 H 0.099 0.901 15 C -0.242 4.242 16 N -0.296 5.296 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.272 0.728 35 H 0.236 0.764 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.172 0.828 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.093 18.258 19.758 29.100 hybrid contribution -0.677 1.467 -2.136 2.678 sum -11.770 19.726 17.622 28.951 Atomic orbital electron populations 1.21631 0.93732 1.02461 1.01839 1.20208 0.96706 0.87646 1.04707 1.22104 0.97405 0.98261 0.86284 1.70350 1.16897 1.03248 1.31506 1.28335 0.97309 0.97637 0.79400 1.84478 1.64975 1.33947 1.24506 1.23028 1.12019 0.85178 0.96464 1.16298 0.78563 0.84981 0.81260 1.90915 1.46327 1.19212 1.81653 1.45953 1.67162 1.16738 1.06932 1.21511 1.02395 0.99041 0.77169 1.21758 1.02336 0.97042 0.94319 1.21502 0.97382 0.90308 0.93417 0.90119 1.22514 1.02211 0.99067 1.00413 1.60193 1.05475 1.22127 1.41760 1.21738 0.98977 0.95086 0.92711 1.19718 0.88571 0.84909 0.83259 1.90567 1.29787 1.74894 1.49366 1.42209 1.22067 1.28073 1.30703 1.19428 1.03393 1.04428 1.16043 0.86296 1.25044 0.97773 0.95912 0.97492 1.69619 1.35162 1.15957 1.31425 0.86669 0.82952 0.78680 0.81077 1.19713 1.20167 1.19449 0.92418 0.91508 0.92818 0.87904 0.89965 0.72819 0.76423 0.88732 0.91481 0.91353 0.90935 0.92149 0.92195 0.92340 0.82802 0.89449 0.93728 0.79719 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.89 37.16 0.37 -0.94 16 2 C -0.05 -0.58 5.93 -27.88 -0.17 -0.74 16 3 C 0.08 0.94 6.41 -82.46 -0.53 0.41 16 4 N -0.49 -4.96 11.26 -10.88 -0.12 -5.08 16 5 C 0.20 1.34 13.21 52.24 0.69 2.03 16 6 O -0.19 -1.64 10.57 4.43 0.05 -1.59 16 7 C -0.11 -1.23 7.18 -36.84 -0.26 -1.50 16 8 C 0.60 7.48 7.79 -12.84 -0.10 7.38 16 9 O -0.50 -7.77 14.79 5.19 0.08 -7.69 16 10 N -0.72 -7.19 5.55 -61.60 -0.34 -7.53 16 11 C 0.12 1.32 5.56 -4.04 -0.02 1.30 16 12 C -0.12 -0.99 5.01 -26.73 -0.13 -1.13 16 13 C 0.09 0.85 2.59 -67.71 -0.18 0.67 16 14 H 0.08 0.78 7.80 -51.93 -0.40 0.37 16 15 C -0.18 -1.56 9.16 37.16 0.34 -1.22 16 16 N -0.66 -9.39 5.33 -107.99 -0.58 -9.97 16 17 C 0.05 0.76 5.97 -4.97 -0.03 0.73 16 18 C 0.45 10.12 7.82 -10.98 -0.09 10.03 16 19 O -0.56 -15.09 15.78 5.55 0.09 -15.01 16 20 N -0.59 -14.09 5.09 -10.96 -0.06 -14.14 16 21 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 22 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.94 13.96 55.50 0.77 -25.16 16 25 Si 0.88 19.45 27.74 -169.99 -4.71 14.74 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 1.23 6.45 -51.93 -0.33 0.89 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.26 0.27 8.06 -52.49 -0.42 -0.16 16 35 H 0.40 3.00 8.27 -40.82 -0.34 2.67 16 36 H 0.09 1.36 7.75 -51.93 -0.40 0.96 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 42 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 43 H 0.35 5.25 8.17 -39.30 -0.32 4.93 16 44 H 0.09 1.26 8.05 -51.93 -0.42 0.85 16 45 H 0.04 0.61 7.44 -51.93 -0.39 0.23 16 46 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -35.99 397.13 -6.21 -42.20 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -7.01 Total: 14.02 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -0.36 Total: 9.24 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.32 Total: -61.89 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.21 Total: -24.29 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.99 -6.21 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567229460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.399 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds