Wall clock time and date at job start Tue Mar 31 2020 20:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34259 * 126.52122 * 2 1 4 4 C 1.34051 * 108.22306 * 179.97438 * 3 2 1 5 5 N 1.29939 * 109.24341 * 359.74521 * 4 3 2 6 6 C 1.36061 * 108.47604 * 0.40173 * 5 4 3 7 7 C 1.47418 * 126.44718 * 179.86420 * 6 5 4 8 8 O 1.21608 * 120.00385 * 179.69397 * 7 6 5 9 9 N 1.34778 * 119.99966 * 359.68673 * 7 6 5 10 10 C 1.46503 * 120.00231 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47633 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47223 * 295.00672 * 11 10 9 13 13 N 1.46904 * 109.46882 * 54.99792 * 11 10 9 14 14 C 1.46900 * 110.99611 * 61.50884 * 13 11 10 15 15 C 1.50709 * 109.46921 * 185.78229 * 14 13 11 16 16 O 1.21286 * 120.00050 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99686 * 179.72555 * 15 14 13 18 18 C 1.37099 * 120.00134 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99173 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00280 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00168 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99950 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47235 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46978 * 120.00304 * 22 20 18 25 25 H 1.48497 * 109.47700 * 240.00084 * 22 20 18 26 26 C 1.52990 * 109.47464 * 174.99982 * 11 10 9 27 27 C 1.53005 * 109.47032 * 64.63464 * 26 11 10 28 28 C 1.53007 * 109.47361 * 184.63102 * 26 11 10 29 29 H 1.08996 * 109.47513 * 270.04592 * 1 2 3 30 30 H 1.09003 * 109.47272 * 30.05127 * 1 2 3 31 31 H 1.09007 * 109.46620 * 150.04715 * 1 2 3 32 32 H 1.08000 * 125.37977 * 180.02562 * 4 3 2 33 33 H 0.97003 * 120.00408 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.46781 * 59.99955 * 10 9 7 35 35 H 1.09001 * 109.47036 * 300.00685 * 10 9 7 36 36 H 1.00903 * 111.00357 * 185.46080 * 13 11 10 37 37 H 1.09003 * 109.47190 * 65.78562 * 14 13 11 38 38 H 1.08993 * 109.47384 * 305.78541 * 14 13 11 39 39 H 0.97010 * 120.00182 * 0.02562 * 17 15 14 40 40 H 0.96996 * 120.00087 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.47414 * 304.63321 * 26 11 10 42 42 H 1.09004 * 109.46991 * 59.99946 * 27 26 11 43 43 H 1.09006 * 109.47191 * 179.97438 * 27 26 11 44 44 H 1.08996 * 109.46984 * 300.00214 * 27 26 11 45 45 H 1.09000 * 109.46825 * 63.44272 * 28 26 11 46 46 H 1.08999 * 109.46867 * 183.44238 * 28 26 11 47 47 H 1.08994 * 109.46919 * 303.44706 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5788 0.6581 0.0006 5 7 3.6002 -0.6411 0.0064 6 6 2.3170 -1.0936 0.0007 7 6 1.8854 -2.5031 0.0015 8 8 0.7004 -2.7763 0.0015 9 7 2.8042 -3.4892 0.0020 10 6 2.3753 -4.8901 0.0033 11 6 3.6052 -5.8001 0.0042 12 1 4.1557 -5.6679 -0.9272 13 7 4.4713 -5.4516 1.1385 14 6 3.7728 -5.6521 2.4152 15 6 4.6369 -5.1525 3.5444 16 8 5.7270 -4.6759 3.3087 17 7 4.1957 -5.2299 4.8155 18 6 4.9814 -4.7750 5.8428 19 1 5.9541 -4.3550 5.6333 20 6 4.5264 -4.8542 7.1532 21 7 3.3430 -5.3657 7.4081 22 14 5.5973 -4.2350 8.5528 23 1 6.8737 -3.7102 8.0046 24 1 4.8870 -3.1505 9.2771 25 1 5.8823 -5.3515 9.4895 26 6 3.1605 -7.2584 0.1314 27 6 2.3544 -7.6556 -1.1070 28 6 4.3921 -8.1588 0.2485 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8895 -0.5146 31 1 -0.3633 -0.8905 -0.5131 32 1 4.4489 1.2978 0.0011 33 1 3.7495 -3.2715 0.0022 34 1 1.7773 -5.0878 -0.8863 35 1 1.7778 -5.0863 0.8936 36 1 5.3322 -5.9770 1.1109 37 1 3.5698 -6.7139 2.5554 38 1 2.8327 -5.1007 2.4056 39 1 3.3221 -5.6075 5.0036 40 1 3.0255 -5.4214 8.3229 41 1 2.5407 -7.3731 1.0206 42 1 2.9743 -7.5409 -1.9962 43 1 2.0379 -8.6948 -1.0166 44 1 1.4771 -7.0142 -1.1904 45 1 4.9334 -7.9168 1.1630 46 1 4.0778 -9.2022 0.2775 47 1 5.0421 -7.9989 -0.6116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568444221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:50 Heat of formation + Delta-G solvation = -56.666892 kcal Electronic energy + Delta-G solvation = -29872.858204 eV Core-core repulsion = 25671.209820 eV Total energy + Delta-G solvation = -4201.648384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.50984 -39.76661 -38.66733 -37.52574 -34.93913 -34.23512 -33.95982 -32.79524 -32.47877 -31.16505 -29.16226 -27.44515 -27.36953 -26.04358 -24.42335 -23.79661 -22.54370 -21.61415 -20.51267 -19.96332 -18.97891 -18.12742 -17.78520 -17.00805 -16.78956 -16.22548 -15.99184 -15.50852 -14.88785 -14.85887 -14.78727 -14.47661 -14.30997 -13.99922 -13.81447 -13.61283 -13.50385 -13.21365 -13.16632 -12.77475 -12.58006 -12.44304 -12.25682 -12.15526 -11.82188 -11.52258 -11.45447 -11.37960 -11.15528 -10.95175 -10.89399 -10.84209 -10.61737 -10.32562 -10.19371 -10.05252 -9.48294 -9.12373 -8.80411 -8.45630 -8.01533 -7.91988 -6.38420 -3.78986 1.02606 2.00996 2.46044 3.18014 3.18595 3.28228 3.35559 3.37458 3.95127 3.98243 4.13352 4.36668 4.52091 4.59769 4.68726 4.87553 4.89428 5.05086 5.08956 5.26297 5.27868 5.29932 5.32023 5.33099 5.51099 5.52404 5.59552 5.71694 5.71925 5.76469 5.83767 5.86400 5.91589 5.97250 6.00468 6.05171 6.17643 6.25461 6.30365 6.53369 7.17908 7.32096 7.58322 7.61786 7.73310 8.10040 8.27462 8.65213 9.21688 9.58550 10.10294 10.79533 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007291 B = 0.003781 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.487258 B = 7403.616678 C =10093.827494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.038 3.962 3 O -0.202 6.202 4 C 0.173 3.827 5 N -0.455 5.455 6 C -0.074 4.074 7 C 0.600 3.400 8 O -0.546 6.546 9 N -0.693 5.693 10 C 0.126 3.874 11 C 0.079 3.921 12 H 0.090 0.910 13 N -0.658 5.658 14 C 0.045 3.955 15 C 0.443 3.557 16 O -0.581 6.581 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.130 4.130 27 C -0.146 4.146 28 C -0.151 4.151 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.255 0.745 33 H 0.420 0.580 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.353 0.647 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.391 0.609 40 H 0.270 0.730 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 3.903 -18.511 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 O -0.089 6.089 4 C -0.056 4.056 5 N -0.184 5.184 6 C -0.194 4.194 7 C 0.386 3.614 8 O -0.425 6.425 9 N -0.344 5.344 10 C 0.002 3.998 11 C -0.032 4.032 12 H 0.108 0.892 13 N -0.290 5.290 14 C -0.088 4.088 15 C 0.228 3.772 16 O -0.464 6.464 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.755 3.245 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.151 4.151 27 C -0.204 4.204 28 C -0.208 4.208 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.271 0.729 33 H 0.258 0.742 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.174 0.826 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.059 4.297 -18.496 19.651 hybrid contribution 0.039 -0.344 1.155 1.205 sum -5.019 3.953 -17.342 18.481 Atomic orbital electron populations 1.20584 0.82677 1.05155 1.04784 1.23733 0.95178 0.83441 0.99464 1.84367 1.18670 1.36289 1.69575 1.28029 0.85157 0.91291 1.01118 1.70790 1.21619 1.10088 1.15856 1.21483 0.88879 0.95617 1.13425 1.16691 0.85420 0.82722 0.76564 1.90756 1.16358 1.83405 1.51991 1.45612 1.11017 1.05153 1.72641 1.21511 0.96150 0.79876 1.02296 1.21944 0.93777 0.91771 0.95706 0.89199 1.60174 1.06659 1.61943 1.00221 1.21753 0.98032 0.99276 0.89734 1.19810 0.88384 0.85360 0.83598 1.90520 1.22707 1.49530 1.83682 1.41870 1.18825 1.54905 1.04655 1.19737 1.01107 1.36999 0.84817 0.87937 1.25244 0.96572 0.97515 0.98650 1.69622 1.18065 1.45479 1.21211 0.85822 0.79871 0.78302 0.80482 1.19240 1.20796 1.20787 1.21821 0.97897 0.95700 0.99682 1.21853 0.99919 1.01330 0.97299 1.21855 0.97414 0.99405 1.02121 0.88952 0.90307 0.87008 0.72944 0.74241 0.90883 0.91198 0.82616 0.93489 0.89647 0.77579 0.91988 0.90440 0.92625 0.92697 0.92304 0.92267 0.92372 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.88 36.01 0.36 -0.37 16 2 C 0.04 0.48 7.44 -35.08 -0.26 0.22 16 3 O -0.20 -2.28 10.73 6.50 0.07 -2.21 16 4 C 0.17 1.81 13.19 51.96 0.69 2.49 16 5 N -0.46 -6.43 11.06 -11.48 -0.13 -6.56 16 6 C -0.07 -1.09 6.99 -83.03 -0.58 -1.67 16 7 C 0.60 9.39 7.81 -12.52 -0.10 9.30 16 8 O -0.55 -9.15 14.80 5.27 0.08 -9.07 16 9 N -0.69 -10.04 5.39 -61.38 -0.33 -10.37 16 10 C 0.13 1.59 4.34 -4.04 -0.02 1.58 16 11 C 0.08 0.91 2.29 -67.72 -0.15 0.76 16 12 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 13 N -0.66 -9.93 5.21 -107.99 -0.56 -10.49 16 14 C 0.04 0.78 5.16 -4.97 -0.03 0.76 16 15 C 0.44 10.53 7.84 -10.98 -0.09 10.45 16 16 O -0.58 -15.76 15.90 5.55 0.09 -15.67 16 17 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 18 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 19 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 22 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.13 -1.33 1.94 -90.62 -0.18 -1.50 16 27 C -0.15 -1.25 8.94 37.16 0.33 -0.92 16 28 C -0.15 -1.51 8.57 37.16 0.32 -1.20 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.11 1.17 6.48 -51.92 -0.34 0.84 16 32 H 0.25 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.42 6.35 7.87 -40.82 -0.32 6.03 16 34 H 0.07 0.84 6.81 -51.93 -0.35 0.49 16 35 H 0.07 0.98 6.58 -51.93 -0.34 0.64 16 36 H 0.35 5.41 7.11 -39.29 -0.28 5.13 16 37 H 0.05 0.75 6.31 -51.93 -0.33 0.42 16 38 H 0.09 1.50 6.16 -51.93 -0.32 1.18 16 39 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.08 0.87 6.78 -51.93 -0.35 0.52 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.50 6.67 -51.93 -0.35 0.15 16 45 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -34.41 387.47 -5.78 -40.18 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -6.53 Total: 19.07 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 0.05 Total: 11.82 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.35 Total: -66.32 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: 0.24 Total: -26.95 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.41 -5.78 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568444221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.483 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds