Wall clock time and date at job start Tue Mar 31 2020 20:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34259 * 126.52122 * 2 1 4 4 C 1.34051 * 108.22306 * 179.97438 * 3 2 1 5 5 N 1.29939 * 109.24341 * 359.74521 * 4 3 2 6 6 C 1.36061 * 108.47604 * 0.40173 * 5 4 3 7 7 C 1.47418 * 126.44718 * 179.86420 * 6 5 4 8 8 O 1.21608 * 120.00385 * 179.69397 * 7 6 5 9 9 N 1.34778 * 119.99966 * 359.68673 * 7 6 5 10 10 C 1.46503 * 120.00231 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47633 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47223 * 295.00672 * 11 10 9 13 13 N 1.46904 * 109.46882 * 54.99792 * 11 10 9 14 14 C 1.46900 * 110.99611 * 61.50884 * 13 11 10 15 15 C 1.50709 * 109.46921 * 185.78229 * 14 13 11 16 16 O 1.21286 * 120.00050 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99686 * 179.72555 * 15 14 13 18 18 C 1.37099 * 120.00134 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99173 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00280 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00168 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99950 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47235 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46978 * 120.00304 * 22 20 18 25 25 H 1.48497 * 109.47700 * 240.00084 * 22 20 18 26 26 C 1.52990 * 109.47464 * 174.99982 * 11 10 9 27 27 C 1.53005 * 109.47032 * 64.63464 * 26 11 10 28 28 C 1.53007 * 109.47361 * 184.63102 * 26 11 10 29 29 H 1.08996 * 109.47513 * 270.04592 * 1 2 3 30 30 H 1.09003 * 109.47272 * 30.05127 * 1 2 3 31 31 H 1.09007 * 109.46620 * 150.04715 * 1 2 3 32 32 H 1.08000 * 125.37977 * 180.02562 * 4 3 2 33 33 H 0.97003 * 120.00408 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.46781 * 59.99955 * 10 9 7 35 35 H 1.09001 * 109.47036 * 300.00685 * 10 9 7 36 36 H 1.00903 * 111.00357 * 185.46080 * 13 11 10 37 37 H 1.09003 * 109.47190 * 65.78562 * 14 13 11 38 38 H 1.08993 * 109.47384 * 305.78541 * 14 13 11 39 39 H 0.97010 * 120.00182 * 0.02562 * 17 15 14 40 40 H 0.96996 * 120.00087 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.47414 * 304.63321 * 26 11 10 42 42 H 1.09004 * 109.46991 * 59.99946 * 27 26 11 43 43 H 1.09006 * 109.47191 * 179.97438 * 27 26 11 44 44 H 1.08996 * 109.46984 * 300.00214 * 27 26 11 45 45 H 1.09000 * 109.46825 * 63.44272 * 28 26 11 46 46 H 1.08999 * 109.46867 * 183.44238 * 28 26 11 47 47 H 1.08994 * 109.46919 * 303.44706 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5788 0.6581 0.0006 5 7 3.6002 -0.6411 0.0064 6 6 2.3170 -1.0936 0.0007 7 6 1.8854 -2.5031 0.0015 8 8 0.7004 -2.7763 0.0015 9 7 2.8042 -3.4892 0.0020 10 6 2.3753 -4.8901 0.0033 11 6 3.6052 -5.8001 0.0042 12 1 4.1557 -5.6679 -0.9272 13 7 4.4713 -5.4516 1.1385 14 6 3.7728 -5.6521 2.4152 15 6 4.6369 -5.1525 3.5444 16 8 5.7270 -4.6759 3.3087 17 7 4.1957 -5.2299 4.8155 18 6 4.9814 -4.7750 5.8428 19 1 5.9541 -4.3550 5.6333 20 6 4.5264 -4.8542 7.1532 21 7 3.3430 -5.3657 7.4081 22 14 5.5973 -4.2350 8.5528 23 1 6.8737 -3.7102 8.0046 24 1 4.8870 -3.1505 9.2771 25 1 5.8823 -5.3515 9.4895 26 6 3.1605 -7.2584 0.1314 27 6 2.3544 -7.6556 -1.1070 28 6 4.3921 -8.1588 0.2485 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8895 -0.5146 31 1 -0.3633 -0.8905 -0.5131 32 1 4.4489 1.2978 0.0011 33 1 3.7495 -3.2715 0.0022 34 1 1.7773 -5.0878 -0.8863 35 1 1.7778 -5.0863 0.8936 36 1 5.3322 -5.9770 1.1109 37 1 3.5698 -6.7139 2.5554 38 1 2.8327 -5.1007 2.4056 39 1 3.3221 -5.6075 5.0036 40 1 3.0255 -5.4214 8.3229 41 1 2.5407 -7.3731 1.0206 42 1 2.9743 -7.5409 -1.9962 43 1 2.0379 -8.6948 -1.0166 44 1 1.4771 -7.0142 -1.1904 45 1 4.9334 -7.9168 1.1630 46 1 4.0778 -9.2022 0.2775 47 1 5.0421 -7.9989 -0.6116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568444221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:49 Heat of formation + Delta-G solvation = -85.949009 kcal Electronic energy + Delta-G solvation = -29874.127972 eV Core-core repulsion = 25671.209820 eV Total energy + Delta-G solvation = -4202.918152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.42355 -40.94963 -40.16213 -39.01480 -35.98854 -35.91975 -35.27784 -34.02559 -33.36666 -33.22998 -30.24293 -28.73160 -28.23036 -27.21969 -26.11154 -24.89231 -23.49889 -22.53823 -21.72622 -21.32174 -20.37764 -19.85820 -19.05203 -18.31536 -17.90257 -17.32025 -17.15826 -16.93209 -16.46689 -16.09528 -15.89035 -15.80333 -15.66165 -15.26673 -15.14144 -15.00469 -14.61105 -14.30873 -14.03621 -13.93815 -13.62752 -13.56874 -13.46405 -13.35286 -13.12480 -12.94602 -12.87422 -12.45433 -12.41577 -12.34536 -12.12953 -12.10483 -11.81404 -11.74840 -11.52853 -11.51291 -11.18411 -10.35282 -10.18769 -10.01667 -9.82107 -9.30649 -8.47301 -5.96094 0.05411 1.06643 1.35136 1.39862 1.54427 1.59752 2.04994 2.12993 2.26913 2.28556 2.92288 3.15504 3.19758 3.51308 3.64332 3.66175 3.79998 3.93498 4.05303 4.24809 4.25404 4.28487 4.39653 4.40494 4.42822 4.50701 4.57668 4.68709 4.71273 4.81706 4.88551 4.89393 5.01939 5.05832 5.09085 5.17842 5.23503 5.35090 5.39956 5.41978 5.48655 5.86335 6.07515 6.32455 6.40444 6.59103 6.63162 7.11316 7.12139 7.55534 8.10919 8.70555 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007291 B = 0.003781 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.487258 B = 7403.616678 C =10093.827494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.041 3.959 3 O -0.199 6.199 4 C 0.191 3.809 5 N -0.496 5.496 6 C -0.110 4.110 7 C 0.592 3.408 8 O -0.566 6.566 9 N -0.693 5.693 10 C 0.126 3.874 11 C 0.089 3.911 12 H 0.108 0.892 13 N -0.667 5.667 14 C 0.066 3.934 15 C 0.440 3.560 16 O -0.617 6.617 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.125 4.125 27 C -0.142 4.142 28 C -0.148 4.148 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.302 0.698 33 H 0.416 0.584 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.353 0.647 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.393 0.607 40 H 0.277 0.723 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 4.288 -19.225 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.016 4.016 3 O -0.086 6.086 4 C -0.038 4.038 5 N -0.225 5.225 6 C -0.229 4.229 7 C 0.379 3.621 8 O -0.447 6.447 9 N -0.343 5.343 10 C 0.002 3.998 11 C -0.022 4.022 12 H 0.126 0.874 13 N -0.299 5.299 14 C -0.067 4.067 15 C 0.227 3.773 16 O -0.503 6.503 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.194 1.194 26 C -0.146 4.146 27 C -0.199 4.199 28 C -0.205 4.205 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.316 0.684 33 H 0.253 0.747 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.173 0.827 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.227 0.773 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.256 4.648 -19.229 20.469 hybrid contribution 0.119 -0.415 1.312 1.381 sum -5.137 4.233 -17.917 19.113 Atomic orbital electron populations 1.20660 0.80981 1.06061 1.05258 1.24165 0.96242 0.83158 0.98034 1.84402 1.18956 1.35734 1.69476 1.29110 0.85873 0.90866 0.97924 1.70749 1.21704 1.11983 1.18038 1.21531 0.89846 0.95683 1.15819 1.16964 0.85343 0.83507 0.76289 1.90726 1.16929 1.83900 1.53130 1.45679 1.10637 1.05725 1.72246 1.21609 0.96612 0.79286 1.02294 1.21985 0.92930 0.92484 0.94757 0.87393 1.60122 1.07156 1.62670 1.00002 1.21482 0.96544 0.99984 0.88655 1.20859 0.88391 0.83768 0.84243 1.90485 1.24602 1.50823 1.84345 1.41953 1.18786 1.55444 1.05162 1.19697 1.01059 1.38957 0.86380 0.90311 1.26042 0.97798 0.97097 1.00399 1.69687 1.18994 1.45500 1.22153 0.84878 0.77939 0.78203 0.77365 1.19693 1.19752 1.19428 1.21754 0.98074 0.94464 1.00281 1.21815 0.99750 1.01771 0.96609 1.21835 0.97229 0.99848 1.01626 0.88529 0.87362 0.88076 0.68360 0.74697 0.89316 0.92703 0.82654 0.91451 0.89475 0.77315 0.91367 0.91521 0.91498 0.91918 0.92288 0.94241 0.91430 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 9.88 71.24 0.70 -0.65 16 2 C 0.04 1.01 7.44 25.19 0.19 1.19 16 3 O -0.20 -4.16 10.73 0.36 0.00 -4.16 16 4 C 0.19 3.68 13.19 130.52 1.72 5.40 16 5 N -0.50 -13.91 11.06 -305.15 -3.37 -17.29 16 6 C -0.11 -3.27 6.99 40.41 0.28 -2.99 16 7 C 0.59 18.91 7.81 86.66 0.68 19.59 16 8 O -0.57 -19.32 14.80 -4.06 -0.06 -19.38 16 9 N -0.69 -20.28 5.39 -466.37 -2.51 -22.79 16 10 C 0.13 3.12 4.34 86.38 0.37 3.50 16 11 C 0.09 1.94 2.29 44.91 0.10 2.05 16 12 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 13 N -0.67 -20.00 5.21 -495.59 -2.58 -22.59 16 14 C 0.07 2.32 5.16 85.56 0.44 2.76 16 15 C 0.44 21.45 7.84 87.66 0.69 22.14 16 16 O -0.62 -34.47 15.90 -3.05 -0.05 -34.52 16 17 N -0.58 -30.54 5.29 -306.99 -1.62 -32.16 16 18 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 19 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 20 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 21 N -0.92 -51.01 13.05 21.66 0.28 -50.73 16 22 Si 0.99 43.79 29.55 68.60 2.03 45.81 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C -0.12 -2.35 1.94 -10.79 -0.02 -2.37 16 27 C -0.14 -2.09 8.94 71.98 0.64 -1.44 16 28 C -0.15 -2.74 8.57 71.98 0.62 -2.12 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 2.11 6.48 -2.38 -0.02 2.10 16 32 H 0.30 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.42 12.79 7.87 -92.71 -0.73 12.06 16 34 H 0.09 1.94 6.81 -2.39 -0.02 1.93 16 35 H 0.05 1.54 6.58 -2.39 -0.02 1.53 16 36 H 0.35 10.75 7.11 -89.69 -0.64 10.11 16 37 H 0.07 2.12 6.31 -2.39 -0.02 2.11 16 38 H 0.09 3.09 6.16 -2.39 -0.01 3.08 16 39 H 0.39 20.10 7.90 -92.70 -0.73 19.37 16 40 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.07 1.42 6.78 -2.39 -0.02 1.40 16 42 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.06 0.88 6.67 -2.39 -0.02 0.86 16 45 H 0.04 0.89 6.43 -2.39 -0.02 0.87 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.22 387.47 -1.24 -77.47 By element: Atomic # 1 Polarization: 53.08 SS G_CDS: -1.05 Total: 52.02 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 7.70 Total: 28.31 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -9.81 Total: -145.55 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -0.10 Total: -58.05 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -76.22 -1.24 -77.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568444221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.484 kcal (2) G-P(sol) polarization free energy of solvation -76.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds