Wall clock time and date at job start Tue Mar 31 2020 20:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34256 * 126.52283 * 2 1 4 4 C 1.34051 * 108.22244 * 180.02562 * 3 2 1 5 5 N 1.29933 * 109.24806 * 359.97438 * 4 3 2 6 6 C 1.36072 * 108.47529 * 359.73522 * 5 4 3 7 7 C 1.47413 * 126.45135 * 180.30469 * 6 5 4 8 8 O 1.21611 * 120.00105 * 180.14914 * 7 6 5 9 9 N 1.34783 * 119.99811 * 0.13916 * 7 6 5 10 10 C 1.46505 * 119.99734 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46777 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47305 * 65.00176 * 11 10 9 13 13 N 1.46898 * 109.46984 * 304.99958 * 11 10 9 14 14 C 1.46907 * 110.99612 * 156.85396 * 13 11 10 15 15 C 1.50697 * 109.46807 * 176.14959 * 14 13 11 16 16 O 1.21296 * 120.00229 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99891 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00068 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99457 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99950 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99618 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00100 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47058 * 89.99962 * 22 20 18 24 24 H 1.48495 * 109.47023 * 209.99902 * 22 20 18 25 25 H 1.48495 * 109.46868 * 329.99856 * 22 20 18 26 26 C 1.52998 * 109.46848 * 185.00040 * 11 10 9 27 27 C 1.53001 * 109.47494 * 294.20451 * 26 11 10 28 28 C 1.53001 * 109.47346 * 54.21089 * 26 11 10 29 29 H 1.08999 * 109.46886 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47125 * 120.02292 * 1 2 3 31 31 H 1.08998 * 109.46872 * 240.02226 * 1 2 3 32 32 H 1.08007 * 125.37552 * 180.02562 * 4 3 2 33 33 H 0.96996 * 119.99891 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47014 * 300.00346 * 10 9 7 35 35 H 1.08997 * 109.47128 * 60.00724 * 10 9 7 36 36 H 1.00898 * 110.99793 * 280.80278 * 13 11 10 37 37 H 1.09000 * 109.47283 * 296.14920 * 14 13 11 38 38 H 1.09000 * 109.47256 * 56.15361 * 14 13 11 39 39 H 0.96998 * 120.00343 * 359.97438 * 17 15 14 40 40 H 0.97006 * 119.99510 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.47010 * 174.20803 * 26 11 10 42 42 H 1.09000 * 109.46582 * 65.56356 * 27 26 11 43 43 H 1.08996 * 109.47453 * 185.56198 * 27 26 11 44 44 H 1.08995 * 109.47120 * 305.56512 * 27 26 11 45 45 H 1.08999 * 109.47585 * 59.99351 * 28 26 11 46 46 H 1.08993 * 109.47423 * 180.02562 * 28 26 11 47 47 H 1.09004 * 109.46833 * 299.99823 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0006 5 7 3.6003 -0.6412 -0.0004 6 6 2.3170 -1.0937 0.0063 7 6 1.8853 -2.5031 0.0151 8 8 0.7003 -2.7762 0.0178 9 7 2.8041 -3.4893 0.0201 10 6 2.3751 -4.8901 0.0294 11 6 3.6051 -5.8000 0.0341 12 1 4.1564 -5.6611 0.9642 13 7 4.4701 -5.4599 -1.1034 14 6 5.8558 -5.8798 -0.8550 15 6 6.6919 -5.6011 -2.0774 16 8 6.1834 -5.1022 -3.0591 17 7 8.0044 -5.9072 -2.0801 18 6 8.7653 -5.6531 -3.1921 19 1 8.3126 -5.2082 -4.0658 20 6 10.1186 -5.9681 -3.1947 21 7 10.8476 -5.7251 -4.2607 22 14 10.9015 -6.7371 -1.6830 23 1 10.8111 -8.2164 -1.7769 24 1 12.3281 -6.3324 -1.6043 25 1 10.1877 -6.2738 -0.4660 26 6 3.1602 -7.2593 -0.0819 27 6 2.3799 -7.6560 1.1730 28 6 2.2655 -7.4235 -1.3121 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5142 -0.8898 31 1 -0.3633 -0.5135 0.8902 32 1 4.4490 1.2978 -0.0003 33 1 3.7493 -3.2715 0.0182 34 1 1.7786 -5.0814 0.9214 35 1 1.7763 -5.0926 -0.8585 36 1 4.1179 -5.8631 -1.9587 37 1 6.2568 -5.3256 -0.0064 38 1 5.8781 -6.9472 -0.6352 39 1 8.4110 -6.3064 -1.2952 40 1 11.7923 -5.9454 -4.2626 41 1 4.0367 -7.8995 -0.1821 42 1 1.4532 -7.0840 1.2204 43 1 2.1483 -8.7204 1.1356 44 1 2.9821 -7.4460 2.0568 45 1 2.8214 -7.1410 -2.2061 46 1 1.9482 -8.4630 -1.3945 47 1 1.3890 -6.7834 -1.2119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568444222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:54 Heat of formation + Delta-G solvation = -51.740802 kcal Electronic energy + Delta-G solvation = -29434.682658 eV Core-core repulsion = 25233.247885 eV Total energy + Delta-G solvation = -4201.434773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.59011 -39.76458 -38.75301 -37.77207 -35.01429 -34.19976 -34.07510 -33.14184 -32.58347 -31.65451 -29.06247 -27.58122 -27.39607 -26.19593 -24.35944 -23.53490 -22.99265 -21.91795 -20.52505 -19.61907 -19.41123 -18.45309 -18.06562 -17.07060 -16.72326 -16.28074 -15.88154 -15.48766 -15.26294 -15.02551 -14.87814 -14.50903 -14.37825 -14.03555 -13.98478 -13.74627 -13.32822 -13.26669 -13.19027 -13.02034 -12.68588 -12.49653 -12.43262 -12.29843 -12.02457 -11.82694 -11.67578 -11.45616 -11.29526 -11.12764 -10.94875 -10.90808 -10.63574 -10.60250 -10.16795 -9.98101 -9.57889 -9.19654 -8.85221 -8.59634 -8.21397 -8.15465 -6.31602 -3.82998 0.94554 1.93545 2.38181 3.01982 3.05723 3.13804 3.14439 3.29414 3.73336 3.91769 4.05336 4.10185 4.43192 4.58379 4.60302 4.81083 4.83950 4.88306 4.93232 5.09967 5.19102 5.22582 5.22991 5.24915 5.38595 5.49623 5.57668 5.63228 5.67306 5.70397 5.72749 5.74744 5.82310 5.84016 5.91264 5.94253 5.96835 6.12133 6.17328 6.47762 7.04180 7.25000 7.54572 7.57648 7.66505 8.14123 8.20576 8.59030 8.94530 9.41926 9.81938 10.81569 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009832 B = 0.002962 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.164821 B = 9450.731836 C =11586.216571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.036 3.964 3 O -0.202 6.202 4 C 0.174 3.826 5 N -0.456 5.456 6 C -0.075 4.075 7 C 0.599 3.401 8 O -0.547 6.547 9 N -0.693 5.693 10 C 0.130 3.870 11 C 0.076 3.924 12 H 0.085 0.915 13 N -0.662 5.662 14 C 0.046 3.954 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.590 5.590 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.125 4.125 27 C -0.146 4.146 28 C -0.156 4.156 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.256 0.744 33 H 0.418 0.582 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.355 0.645 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.340 5.148 14.986 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.020 4.020 3 O -0.088 6.088 4 C -0.054 4.054 5 N -0.185 5.185 6 C -0.195 4.195 7 C 0.385 3.615 8 O -0.426 6.426 9 N -0.343 5.343 10 C 0.006 3.994 11 C -0.035 4.035 12 H 0.103 0.897 13 N -0.296 5.296 14 C -0.086 4.086 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.145 4.145 27 C -0.204 4.204 28 C -0.213 4.213 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.271 0.729 33 H 0.255 0.745 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.178 0.822 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.628 5.549 14.382 24.179 hybrid contribution 1.105 -1.023 0.953 1.782 sum -17.523 4.526 15.334 23.721 Atomic orbital electron populations 1.20427 0.82649 1.03684 1.05472 1.23718 0.95179 0.83485 0.99640 1.84377 1.18689 1.36237 1.69539 1.28062 0.85134 0.91291 1.00955 1.70807 1.21608 1.10113 1.15935 1.21524 0.88871 0.95656 1.13424 1.16685 0.85434 0.82679 0.76714 1.90774 1.16345 1.83508 1.52002 1.45619 1.10907 1.05307 1.72503 1.21512 0.96011 0.79565 1.02314 1.21927 0.93665 0.92236 0.95658 0.89673 1.60264 1.00608 1.63853 1.04888 1.21758 0.89712 0.98781 0.98386 1.19701 0.82762 0.84632 0.89389 1.90578 1.71693 1.46756 1.35573 1.42202 1.08239 1.56950 1.15564 1.19429 0.90850 1.39143 0.93876 0.86304 1.25039 0.96045 0.97823 0.97256 1.69626 1.07577 1.47034 1.27920 0.86671 0.79997 0.80088 0.82632 1.19698 1.20182 1.19453 1.21769 0.99450 0.97014 0.96308 1.21849 1.00289 1.01367 0.96908 1.21969 0.99909 1.01967 0.97473 0.90431 0.88291 0.88377 0.72878 0.74456 0.91053 0.90761 0.82225 0.89442 0.93577 0.79715 0.91623 0.90594 0.92245 0.92646 0.92597 0.92105 0.92432 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 9.13 36.01 0.33 -0.21 16 2 C 0.04 0.41 7.44 -35.08 -0.26 0.15 16 3 O -0.20 -2.05 10.73 6.51 0.07 -1.98 16 4 C 0.17 1.67 13.19 51.96 0.69 2.35 16 5 N -0.46 -6.01 11.06 -11.48 -0.13 -6.14 16 6 C -0.07 -1.01 6.99 -83.02 -0.58 -1.59 16 7 C 0.60 8.60 7.81 -12.52 -0.10 8.50 16 8 O -0.55 -8.43 15.61 5.27 0.08 -8.34 16 9 N -0.69 -9.28 5.39 -61.38 -0.33 -9.61 16 10 C 0.13 1.51 4.67 -4.04 -0.02 1.49 16 11 C 0.08 0.84 1.95 -67.71 -0.13 0.70 16 12 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 13 N -0.66 -9.63 5.38 -107.99 -0.58 -10.21 16 14 C 0.05 0.73 5.97 -4.97 -0.03 0.70 16 15 C 0.45 9.99 7.81 -10.99 -0.09 9.90 16 16 O -0.56 -14.97 15.69 5.54 0.09 -14.88 16 17 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 18 C -0.30 -8.57 10.16 -14.93 -0.15 -8.73 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 22 Si 0.88 19.26 27.74 -169.99 -4.71 14.54 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 26 C -0.12 -1.20 2.78 -90.62 -0.25 -1.45 16 27 C -0.15 -1.17 8.83 37.16 0.33 -0.84 16 28 C -0.16 -1.53 8.50 37.16 0.32 -1.22 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 31 H 0.10 0.78 8.06 -51.93 -0.42 0.36 16 32 H 0.26 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.42 5.93 7.87 -40.82 -0.32 5.61 16 34 H 0.07 0.76 6.97 -51.93 -0.36 0.40 16 35 H 0.07 0.92 6.05 -51.93 -0.31 0.61 16 36 H 0.36 5.62 6.19 -39.29 -0.24 5.38 16 37 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.05 0.63 7.16 -51.93 -0.37 0.26 16 39 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.08 0.78 7.17 -51.93 -0.37 0.40 16 42 H 0.06 0.46 6.98 -51.93 -0.36 0.10 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.61 6.23 -51.93 -0.32 0.28 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -35.22 387.42 -5.58 -40.80 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -6.58 Total: 18.08 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -0.05 Total: 10.80 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.32 Total: -64.87 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.24 Total: -25.20 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.22 -5.58 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568444222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.940 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds