Wall clock time and date at job start Tue Mar 31 2020 20:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34256 * 126.52283 * 2 1 4 4 C 1.34051 * 108.22244 * 180.02562 * 3 2 1 5 5 N 1.29933 * 109.24806 * 359.97438 * 4 3 2 6 6 C 1.36072 * 108.47529 * 359.73522 * 5 4 3 7 7 C 1.47413 * 126.45135 * 180.30469 * 6 5 4 8 8 O 1.21611 * 120.00105 * 180.14914 * 7 6 5 9 9 N 1.34783 * 119.99811 * 0.13916 * 7 6 5 10 10 C 1.46505 * 119.99734 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46777 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47305 * 65.00176 * 11 10 9 13 13 N 1.46898 * 109.46984 * 304.99958 * 11 10 9 14 14 C 1.46907 * 110.99612 * 156.85396 * 13 11 10 15 15 C 1.50697 * 109.46807 * 176.14959 * 14 13 11 16 16 O 1.21296 * 120.00229 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99891 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00068 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99457 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99950 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99618 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00100 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47058 * 89.99962 * 22 20 18 24 24 H 1.48495 * 109.47023 * 209.99902 * 22 20 18 25 25 H 1.48495 * 109.46868 * 329.99856 * 22 20 18 26 26 C 1.52998 * 109.46848 * 185.00040 * 11 10 9 27 27 C 1.53001 * 109.47494 * 294.20451 * 26 11 10 28 28 C 1.53001 * 109.47346 * 54.21089 * 26 11 10 29 29 H 1.08999 * 109.46886 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47125 * 120.02292 * 1 2 3 31 31 H 1.08998 * 109.46872 * 240.02226 * 1 2 3 32 32 H 1.08007 * 125.37552 * 180.02562 * 4 3 2 33 33 H 0.96996 * 119.99891 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47014 * 300.00346 * 10 9 7 35 35 H 1.08997 * 109.47128 * 60.00724 * 10 9 7 36 36 H 1.00898 * 110.99793 * 280.80278 * 13 11 10 37 37 H 1.09000 * 109.47283 * 296.14920 * 14 13 11 38 38 H 1.09000 * 109.47256 * 56.15361 * 14 13 11 39 39 H 0.96998 * 120.00343 * 359.97438 * 17 15 14 40 40 H 0.97006 * 119.99510 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.47010 * 174.20803 * 26 11 10 42 42 H 1.09000 * 109.46582 * 65.56356 * 27 26 11 43 43 H 1.08996 * 109.47453 * 185.56198 * 27 26 11 44 44 H 1.08995 * 109.47120 * 305.56512 * 27 26 11 45 45 H 1.08999 * 109.47585 * 59.99351 * 28 26 11 46 46 H 1.08993 * 109.47423 * 180.02562 * 28 26 11 47 47 H 1.09004 * 109.46833 * 299.99823 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0006 5 7 3.6003 -0.6412 -0.0004 6 6 2.3170 -1.0937 0.0063 7 6 1.8853 -2.5031 0.0151 8 8 0.7003 -2.7762 0.0178 9 7 2.8041 -3.4893 0.0201 10 6 2.3751 -4.8901 0.0294 11 6 3.6051 -5.8000 0.0341 12 1 4.1564 -5.6611 0.9642 13 7 4.4701 -5.4599 -1.1034 14 6 5.8558 -5.8798 -0.8550 15 6 6.6919 -5.6011 -2.0774 16 8 6.1834 -5.1022 -3.0591 17 7 8.0044 -5.9072 -2.0801 18 6 8.7653 -5.6531 -3.1921 19 1 8.3126 -5.2082 -4.0658 20 6 10.1186 -5.9681 -3.1947 21 7 10.8476 -5.7251 -4.2607 22 14 10.9015 -6.7371 -1.6830 23 1 10.8111 -8.2164 -1.7769 24 1 12.3281 -6.3324 -1.6043 25 1 10.1877 -6.2738 -0.4660 26 6 3.1602 -7.2593 -0.0819 27 6 2.3799 -7.6560 1.1730 28 6 2.2655 -7.4235 -1.3121 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5142 -0.8898 31 1 -0.3633 -0.5135 0.8902 32 1 4.4490 1.2978 -0.0003 33 1 3.7493 -3.2715 0.0182 34 1 1.7786 -5.0814 0.9214 35 1 1.7763 -5.0926 -0.8585 36 1 4.1179 -5.8631 -1.9587 37 1 6.2568 -5.3256 -0.0064 38 1 5.8781 -6.9472 -0.6352 39 1 8.4110 -6.3064 -1.2952 40 1 11.7923 -5.9454 -4.2626 41 1 4.0367 -7.8995 -0.1821 42 1 1.4532 -7.0840 1.2204 43 1 2.1483 -8.7204 1.1356 44 1 2.9821 -7.4460 2.0568 45 1 2.8214 -7.1410 -2.2061 46 1 1.9482 -8.4630 -1.3945 47 1 1.3890 -6.7834 -1.2119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568444222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:54 Heat of formation + Delta-G solvation = -82.883602 kcal Electronic energy + Delta-G solvation = -29436.033111 eV Core-core repulsion = 25233.247885 eV Total energy + Delta-G solvation = -4202.785226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.41583 -40.84319 -40.25968 -39.03072 -36.05008 -35.90436 -35.14287 -34.33048 -33.70796 -33.36747 -30.09295 -28.59682 -28.14873 -27.52226 -25.72384 -24.72448 -23.90835 -22.74560 -21.50347 -21.29581 -20.47863 -20.30349 -19.04644 -17.96115 -17.90939 -17.40486 -17.13228 -16.72794 -16.54056 -16.40799 -15.86352 -15.70711 -15.35559 -15.30853 -15.13124 -14.80711 -14.68772 -14.25626 -14.17174 -14.14374 -13.93206 -13.78570 -13.52318 -13.33136 -13.13509 -12.95156 -12.78579 -12.53355 -12.41187 -12.36863 -12.09474 -11.97757 -11.79454 -11.73841 -11.51180 -11.44687 -11.20687 -10.43322 -10.24379 -10.15389 -9.78746 -9.31149 -8.40846 -6.01706 0.07066 1.07521 1.30708 1.35886 1.45046 1.61216 1.96920 2.17943 2.23511 2.29304 2.71561 3.15712 3.16200 3.38978 3.65734 3.74782 3.79850 3.94661 4.05640 4.18309 4.23663 4.26200 4.36048 4.42948 4.44700 4.58539 4.59928 4.70871 4.73889 4.82735 4.90265 4.90660 5.00804 5.07221 5.09137 5.17965 5.22681 5.34888 5.39979 5.52427 5.53614 5.90815 6.03894 6.34207 6.36124 6.60179 6.65476 6.88876 7.14739 7.40519 7.97471 8.76973 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009832 B = 0.002962 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.164821 B = 9450.731836 C =11586.216571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.041 3.959 3 O -0.199 6.199 4 C 0.190 3.810 5 N -0.497 5.497 6 C -0.110 4.110 7 C 0.593 3.407 8 O -0.566 6.566 9 N -0.693 5.693 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.102 0.898 13 N -0.678 5.678 14 C 0.062 3.938 15 C 0.449 3.551 16 O -0.615 6.615 17 N -0.590 5.590 18 C -0.327 4.327 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.230 1.230 26 C -0.118 4.118 27 C -0.142 4.142 28 C -0.155 4.155 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.299 0.701 33 H 0.414 0.586 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.345 0.655 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.452 4.531 18.763 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.017 4.017 3 O -0.085 6.085 4 C -0.038 4.038 5 N -0.226 5.226 6 C -0.228 4.228 7 C 0.379 3.621 8 O -0.447 6.447 9 N -0.342 5.342 10 C 0.008 3.992 11 C -0.026 4.026 12 H 0.120 0.880 13 N -0.311 5.311 14 C -0.070 4.070 15 C 0.237 3.763 16 O -0.499 6.499 17 N -0.232 5.232 18 C -0.457 4.457 19 H 0.072 0.928 20 C -0.214 4.214 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.153 1.153 26 C -0.139 4.139 27 C -0.200 4.200 28 C -0.213 4.213 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.314 0.686 33 H 0.251 0.749 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.166 0.834 37 H 0.133 0.867 38 H 0.097 0.903 39 H 0.225 0.775 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.765 4.914 18.190 26.592 hybrid contribution 1.058 -0.717 -0.350 1.325 sum -17.707 4.197 17.840 25.483 Atomic orbital electron populations 1.20527 0.80852 1.05408 1.05244 1.24172 0.96258 0.83136 0.98085 1.84412 1.18934 1.35778 1.69425 1.29070 0.85858 0.90883 0.98016 1.70762 1.21824 1.11939 1.18054 1.21567 0.89730 0.95756 1.15757 1.16928 0.85349 0.83398 0.76432 1.90743 1.16890 1.83967 1.53111 1.45684 1.10527 1.05891 1.72135 1.21585 0.96379 0.78907 1.02347 1.21955 0.92863 0.92979 0.94760 0.87960 1.60246 1.00616 1.64552 1.05733 1.21684 0.89044 1.01220 0.95097 1.20995 0.82574 0.82090 0.90662 1.90559 1.72676 1.48406 1.38283 1.42018 1.08559 1.57708 1.14917 1.18993 0.92061 1.40595 0.94022 0.92842 1.26126 0.95940 0.97710 1.01644 1.69813 1.08277 1.48411 1.31152 0.85359 0.78540 0.79311 0.78274 1.18156 1.20134 1.15297 1.21710 0.99578 0.95721 0.96884 1.21816 1.00168 1.01855 0.96156 1.21958 0.99772 1.02543 0.96983 0.87728 0.88780 0.88151 0.68596 0.74934 0.89703 0.91977 0.83355 0.86674 0.90258 0.77461 0.91177 0.90502 0.92181 0.91890 0.91580 0.94093 0.91421 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 9.13 71.24 0.65 -0.34 16 2 C 0.04 0.89 7.44 25.19 0.19 1.07 16 3 O -0.20 -3.74 10.73 0.38 0.00 -3.74 16 4 C 0.19 3.34 13.19 130.52 1.72 5.07 16 5 N -0.50 -12.91 11.06 -305.15 -3.37 -16.28 16 6 C -0.11 -2.95 6.99 40.40 0.28 -2.67 16 7 C 0.59 17.20 7.81 86.66 0.68 17.87 16 8 O -0.57 -17.62 15.61 -4.07 -0.06 -17.68 16 9 N -0.69 -18.45 5.39 -466.36 -2.51 -20.97 16 10 C 0.13 2.93 4.67 86.38 0.40 3.33 16 11 C 0.08 1.68 1.95 44.91 0.09 1.77 16 12 H 0.10 1.74 7.88 -2.39 -0.02 1.72 16 13 N -0.68 -19.01 5.38 -495.57 -2.67 -21.68 16 14 C 0.06 1.79 5.97 85.55 0.51 2.30 16 15 C 0.45 19.93 7.81 87.66 0.68 20.62 16 16 O -0.61 -34.02 15.69 -3.08 -0.05 -34.06 16 17 N -0.59 -27.51 5.09 -306.98 -1.56 -29.07 16 18 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 19 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 20 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 21 N -0.94 -56.58 13.96 21.66 0.30 -56.28 16 22 Si 0.97 38.48 27.74 68.60 1.90 40.39 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 26 C -0.12 -1.99 2.78 -10.79 -0.03 -2.02 16 27 C -0.14 -1.84 8.83 71.98 0.64 -1.20 16 28 C -0.16 -2.91 8.50 71.98 0.61 -2.30 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 31 H 0.10 1.52 8.06 -2.39 -0.02 1.51 16 32 H 0.30 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.41 11.66 7.87 -92.71 -0.73 10.93 16 34 H 0.08 1.68 6.97 -2.39 -0.02 1.66 16 35 H 0.06 1.55 6.05 -2.39 -0.01 1.53 16 36 H 0.35 11.00 6.19 -89.70 -0.55 10.45 16 37 H 0.12 2.79 8.13 -2.39 -0.02 2.77 16 38 H 0.08 1.84 7.16 -2.39 -0.02 1.82 16 39 H 0.39 14.92 5.76 -92.71 -0.53 14.38 16 40 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 41 H 0.08 1.32 7.17 -2.38 -0.02 1.30 16 42 H 0.06 0.78 6.98 -2.39 -0.02 0.76 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.04 0.93 6.47 -2.39 -0.02 0.91 16 46 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 47 H 0.06 1.18 6.23 -2.38 -0.01 1.16 16 Total: -1.00 -83.56 387.42 -1.11 -84.67 By element: Atomic # 1 Polarization: 50.77 SS G_CDS: -0.84 Total: 49.93 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 7.74 Total: 24.77 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -9.81 Total: -144.27 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -0.11 Total: -55.48 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.39 kcal Total: -83.56 -1.11 -84.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568444222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.785 kcal (2) G-P(sol) polarization free energy of solvation -83.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds