Wall clock time and date at job start Tue Mar 31 2020 21:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.62048 * 2 1 4 4 C 1.34484 * 108.70027 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66836 * 0.27078 * 4 3 2 6 6 C 1.50694 * 126.44286 * 179.73187 * 5 4 3 7 7 C 1.50703 * 109.47219 * 89.99855 * 6 5 4 8 8 O 1.21282 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00193 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99927 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47426 * 34.99416 * 10 9 7 12 12 C 1.53004 * 109.46907 * 274.99455 * 10 9 7 13 13 C 1.52996 * 109.47134 * 154.99751 * 10 9 7 14 14 N 1.46903 * 109.46927 * 304.99860 * 13 10 9 15 15 C 1.46891 * 110.99856 * 293.95055 * 14 13 10 16 16 C 1.46905 * 110.99772 * 170.00096 * 14 13 10 17 17 C 1.50704 * 109.46917 * 190.00174 * 16 14 13 18 18 O 1.21295 * 119.99931 * 359.97438 * 17 16 14 19 19 N 1.34777 * 119.99426 * 180.02562 * 17 16 14 20 20 C 1.37103 * 119.99372 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00021 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00014 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99945 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99671 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47143 * 90.00075 * 24 22 20 26 26 H 1.48502 * 109.47007 * 210.00049 * 24 22 20 27 27 H 1.48503 * 109.47058 * 329.99859 * 24 22 20 28 28 O 1.33972 * 125.61724 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47097 * 90.02027 * 1 2 3 30 30 H 1.09007 * 109.47129 * 210.02172 * 1 2 3 31 31 H 1.08997 * 109.46764 * 330.01876 * 1 2 3 32 32 H 1.08002 * 126.16218 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47520 * 209.99424 * 6 5 4 34 34 H 1.09003 * 109.47512 * 329.99686 * 6 5 4 35 35 H 0.96999 * 119.99679 * 359.97438 * 9 7 6 36 36 H 1.08993 * 109.47270 * 300.00641 * 12 10 9 37 37 H 1.09001 * 109.47103 * 60.00263 * 12 10 9 38 38 H 1.08993 * 109.47100 * 179.97438 * 12 10 9 39 39 H 1.09004 * 109.47053 * 64.99275 * 13 10 9 40 40 H 1.08996 * 109.47110 * 184.99584 * 13 10 9 41 41 H 1.09001 * 109.46915 * 60.00492 * 15 14 13 42 42 H 1.09003 * 109.46991 * 180.02562 * 15 14 13 43 43 H 1.08997 * 109.47479 * 300.00445 * 15 14 13 44 44 H 1.09004 * 109.46689 * 309.99983 * 16 14 13 45 45 H 1.08993 * 109.47335 * 69.99695 * 16 14 13 46 46 H 0.96990 * 120.00597 * 359.97438 * 19 17 16 47 47 H 0.96998 * 119.99484 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6758 -0.0051 6 6 4.7936 -1.5550 -0.0124 7 6 5.2058 -1.8540 1.4060 8 8 4.5688 -1.3977 2.3316 9 7 6.2830 -2.6278 1.6459 10 6 6.6840 -2.9180 3.0247 11 1 5.7959 -3.0070 3.6504 12 6 7.5656 -1.7827 3.5491 13 6 7.4679 -4.2313 3.0622 14 7 6.6656 -5.2981 2.4487 15 6 5.4679 -5.5830 3.2499 16 6 7.4680 -6.5127 2.2509 17 6 6.6959 -7.4926 1.4054 18 8 5.5862 -7.2074 1.0072 19 7 7.2381 -8.6862 1.0927 20 6 6.5355 -9.5779 0.3240 21 1 5.5478 -9.3236 -0.0313 22 6 7.0946 -10.8083 0.0010 23 7 6.4213 -11.6627 -0.7362 24 14 8.8038 -11.2471 0.6138 25 1 8.6989 -11.9206 1.9332 26 1 9.4585 -12.1602 -0.3573 27 1 9.6128 -10.0096 0.7526 28 8 2.2872 -1.0891 0.0005 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 4.4157 1.3161 0.0003 33 1 4.5680 -2.4877 -0.5294 34 1 5.6065 -1.0421 -0.5265 35 1 6.7927 -2.9924 0.9055 36 1 8.4536 -1.6937 2.9235 37 1 7.0071 -0.8470 3.5224 38 1 7.8635 -1.9984 4.5751 39 1 8.4000 -4.1140 2.5093 40 1 7.6896 -4.4927 4.0969 41 1 4.8566 -4.6835 3.3220 42 1 4.8924 -6.3767 2.7734 43 1 5.7662 -5.9007 4.2490 44 1 8.4001 -6.2545 1.7482 45 1 7.6896 -6.9632 3.2183 46 1 8.1252 -8.9144 1.4115 47 1 6.8115 -12.5217 -0.9613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569122224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:07 Heat of formation + Delta-G solvation = -36.668474 kcal Electronic energy + Delta-G solvation = -29152.336742 eV Core-core repulsion = 24951.555554 eV Total energy + Delta-G solvation = -4200.781188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.42154 -39.96917 -38.80459 -37.16078 -34.84017 -34.82679 -33.87131 -33.35924 -31.72655 -31.54279 -30.12894 -28.24613 -27.02498 -26.19596 -24.79682 -22.95332 -22.42400 -21.56364 -20.75329 -20.38319 -19.39193 -18.29882 -17.60262 -17.14689 -16.54357 -16.36274 -16.05000 -15.57526 -15.25033 -15.01445 -14.91701 -14.55157 -14.18105 -14.11066 -13.83036 -13.60795 -13.34347 -13.25010 -13.15435 -12.93262 -12.85278 -12.69004 -12.45608 -12.21081 -12.18493 -12.04385 -11.83059 -11.52325 -11.40225 -11.35066 -11.07199 -10.83395 -10.66204 -10.63748 -10.02895 -10.01542 -9.57926 -9.11927 -8.78393 -8.63127 -8.22699 -8.04560 -6.34950 -3.86518 1.30118 2.44666 2.53183 2.59691 2.98165 3.02796 3.11488 3.19298 3.68958 3.81765 3.91594 4.06263 4.43328 4.62017 4.70179 4.78047 4.80616 4.86750 5.00786 5.09400 5.11534 5.12765 5.18318 5.27900 5.31457 5.36974 5.38208 5.49964 5.52538 5.58818 5.70953 5.80136 5.81850 5.83955 5.90108 5.91331 5.99245 6.21174 6.41556 6.48672 7.06907 7.20075 7.45810 7.54350 7.61522 8.10539 8.15891 8.56083 8.91396 9.38379 9.79143 10.78145 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.002367 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.910761 B =11827.125058 C =13269.685663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.188 3.812 3 N -0.486 5.486 4 C -0.029 4.029 5 C -0.022 4.022 6 C -0.059 4.059 7 C 0.519 3.481 8 O -0.540 6.540 9 N -0.703 5.703 10 C 0.148 3.852 11 H 0.088 0.912 12 C -0.162 4.162 13 C 0.042 3.958 14 N -0.515 5.515 15 C 0.020 3.980 16 C 0.042 3.958 17 C 0.452 3.548 18 O -0.558 6.558 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 O -0.194 6.194 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.181 0.819 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.407 0.593 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.015 0.985 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 21.318 4.822 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.216 5.216 4 C -0.168 4.168 5 C -0.075 4.075 6 C -0.099 4.099 7 C 0.304 3.696 8 O -0.417 6.417 9 N -0.354 5.354 10 C 0.043 3.957 11 H 0.106 0.894 12 C -0.220 4.220 13 C -0.087 4.087 14 N -0.239 5.239 15 C -0.128 4.128 16 C -0.090 4.090 17 C 0.238 3.762 18 O -0.440 6.440 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 O -0.080 6.080 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.198 0.802 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.242 0.758 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.034 0.966 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.144 22.331 4.656 22.812 hybrid contribution 2.377 -1.783 0.865 3.095 sum 2.522 20.548 5.521 21.425 Atomic orbital electron populations 1.20251 0.81404 1.05157 1.04589 1.26239 0.96450 0.78647 1.00463 1.70407 1.02030 1.30333 1.18863 1.22923 0.95105 0.92687 1.06045 1.22474 0.83255 0.94680 1.07108 1.20073 0.92166 1.01181 0.96521 1.20223 0.80226 0.78584 0.90575 1.90728 1.53388 1.51905 1.45689 1.45720 1.29822 1.50912 1.08953 1.20943 0.98179 0.93098 0.83518 0.89433 1.22149 0.99787 0.98924 1.01177 1.22510 0.96545 0.91087 0.98530 1.61573 1.06742 1.06647 1.48919 1.22578 0.92925 1.03049 0.94226 1.21918 0.96778 0.91098 0.99158 1.19624 0.88140 0.82822 0.85642 1.90537 1.20291 1.76800 1.56373 1.42219 1.17181 1.15286 1.48375 1.19417 1.02606 0.94647 1.26654 0.86285 1.25042 0.98247 0.95844 0.97044 1.69618 1.37697 1.08310 1.36450 0.86678 0.84177 0.78993 0.79548 1.19681 1.20168 1.19513 1.84388 1.16493 1.37675 1.69480 0.88961 0.89256 0.88206 0.80203 0.86232 0.85599 0.75823 0.92255 0.91865 0.91658 0.90172 0.93453 0.91983 0.88520 0.96617 0.89292 0.93335 0.79764 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.19 2.32 8.34 -12.95 -0.11 2.21 16 3 N -0.49 -6.56 11.29 -11.10 -0.13 -6.69 16 4 C -0.03 -0.35 11.80 -17.77 -0.21 -0.56 16 5 C -0.02 -0.27 5.88 -35.69 -0.21 -0.48 16 6 C -0.06 -0.57 6.25 -29.04 -0.18 -0.75 16 7 C 0.52 6.34 7.79 -10.98 -0.09 6.26 16 8 O -0.54 -8.79 15.70 5.56 0.09 -8.71 16 9 N -0.70 -7.33 4.80 -53.80 -0.26 -7.59 16 10 C 0.15 1.54 2.35 -67.93 -0.16 1.38 16 11 H 0.09 1.12 6.23 -51.93 -0.32 0.80 16 12 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 13 C 0.04 0.43 4.52 -3.82 -0.02 0.41 16 14 N -0.52 -7.33 4.22 -244.37 -1.03 -8.36 16 15 C 0.02 0.31 8.96 60.06 0.54 0.85 16 16 C 0.04 0.64 5.45 -4.97 -0.03 0.61 16 17 C 0.45 9.70 7.47 -10.98 -0.08 9.62 16 18 O -0.56 -14.19 13.91 5.54 0.08 -14.12 16 19 N -0.59 -13.52 5.09 -10.96 -0.06 -13.58 16 20 C -0.30 -8.38 10.16 -14.93 -0.15 -8.53 16 21 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.33 13.96 55.50 0.77 -24.55 16 24 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 28 O -0.19 -2.70 10.78 5.35 0.06 -2.64 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.41 3.62 8.60 -40.82 -0.35 3.27 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 40 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.06 0.94 6.58 -51.93 -0.34 0.60 16 42 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 43 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.09 1.14 7.93 -51.93 -0.41 0.73 16 45 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 46 H 0.37 7.41 5.76 -40.82 -0.24 7.17 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -36.91 394.82 -6.30 -43.21 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.00 Total: 11.94 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -0.06 Total: 10.98 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.70 Total: -60.77 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: 0.22 Total: -25.47 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.91 -6.30 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569122224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.543 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds