Wall clock time and date at job start Tue Mar 31 2020 21:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.62048 * 2 1 4 4 C 1.34484 * 108.70027 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66836 * 0.27078 * 4 3 2 6 6 C 1.50694 * 126.44286 * 179.73187 * 5 4 3 7 7 C 1.50703 * 109.47219 * 89.99855 * 6 5 4 8 8 O 1.21282 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00193 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99927 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47426 * 34.99416 * 10 9 7 12 12 C 1.53004 * 109.46907 * 274.99455 * 10 9 7 13 13 C 1.52996 * 109.47134 * 154.99751 * 10 9 7 14 14 N 1.46903 * 109.46927 * 304.99860 * 13 10 9 15 15 C 1.46891 * 110.99856 * 293.95055 * 14 13 10 16 16 C 1.46905 * 110.99772 * 170.00096 * 14 13 10 17 17 C 1.50704 * 109.46917 * 190.00174 * 16 14 13 18 18 O 1.21295 * 119.99931 * 359.97438 * 17 16 14 19 19 N 1.34777 * 119.99426 * 180.02562 * 17 16 14 20 20 C 1.37103 * 119.99372 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00021 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00014 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99945 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99671 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47143 * 90.00075 * 24 22 20 26 26 H 1.48502 * 109.47007 * 210.00049 * 24 22 20 27 27 H 1.48503 * 109.47058 * 329.99859 * 24 22 20 28 28 O 1.33972 * 125.61724 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47097 * 90.02027 * 1 2 3 30 30 H 1.09007 * 109.47129 * 210.02172 * 1 2 3 31 31 H 1.08997 * 109.46764 * 330.01876 * 1 2 3 32 32 H 1.08002 * 126.16218 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47520 * 209.99424 * 6 5 4 34 34 H 1.09003 * 109.47512 * 329.99686 * 6 5 4 35 35 H 0.96999 * 119.99679 * 359.97438 * 9 7 6 36 36 H 1.08993 * 109.47270 * 300.00641 * 12 10 9 37 37 H 1.09001 * 109.47103 * 60.00263 * 12 10 9 38 38 H 1.08993 * 109.47100 * 179.97438 * 12 10 9 39 39 H 1.09004 * 109.47053 * 64.99275 * 13 10 9 40 40 H 1.08996 * 109.47110 * 184.99584 * 13 10 9 41 41 H 1.09001 * 109.46915 * 60.00492 * 15 14 13 42 42 H 1.09003 * 109.46991 * 180.02562 * 15 14 13 43 43 H 1.08997 * 109.47479 * 300.00445 * 15 14 13 44 44 H 1.09004 * 109.46689 * 309.99983 * 16 14 13 45 45 H 1.08993 * 109.47335 * 69.99695 * 16 14 13 46 46 H 0.96990 * 120.00597 * 359.97438 * 19 17 16 47 47 H 0.96998 * 119.99484 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6758 -0.0051 6 6 4.7936 -1.5550 -0.0124 7 6 5.2058 -1.8540 1.4060 8 8 4.5688 -1.3977 2.3316 9 7 6.2830 -2.6278 1.6459 10 6 6.6840 -2.9180 3.0247 11 1 5.7959 -3.0070 3.6504 12 6 7.5656 -1.7827 3.5491 13 6 7.4679 -4.2313 3.0622 14 7 6.6656 -5.2981 2.4487 15 6 5.4679 -5.5830 3.2499 16 6 7.4680 -6.5127 2.2509 17 6 6.6959 -7.4926 1.4054 18 8 5.5862 -7.2074 1.0072 19 7 7.2381 -8.6862 1.0927 20 6 6.5355 -9.5779 0.3240 21 1 5.5478 -9.3236 -0.0313 22 6 7.0946 -10.8083 0.0010 23 7 6.4213 -11.6627 -0.7362 24 14 8.8038 -11.2471 0.6138 25 1 8.6989 -11.9206 1.9332 26 1 9.4585 -12.1602 -0.3573 27 1 9.6128 -10.0096 0.7526 28 8 2.2872 -1.0891 0.0005 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 4.4157 1.3161 0.0003 33 1 4.5680 -2.4877 -0.5294 34 1 5.6065 -1.0421 -0.5265 35 1 6.7927 -2.9924 0.9055 36 1 8.4536 -1.6937 2.9235 37 1 7.0071 -0.8470 3.5224 38 1 7.8635 -1.9984 4.5751 39 1 8.4000 -4.1140 2.5093 40 1 7.6896 -4.4927 4.0969 41 1 4.8566 -4.6835 3.3220 42 1 4.8924 -6.3767 2.7734 43 1 5.7662 -5.9007 4.2490 44 1 8.4001 -6.2545 1.7482 45 1 7.6896 -6.9632 3.2183 46 1 8.1252 -8.9144 1.4115 47 1 6.8115 -12.5217 -0.9613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569122224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:06 Heat of formation + Delta-G solvation = -69.204502 kcal Electronic energy + Delta-G solvation = -29153.747610 eV Core-core repulsion = 24951.555554 eV Total energy + Delta-G solvation = -4202.192056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.34913 -40.95757 -40.36005 -38.37142 -36.14493 -35.79115 -35.54116 -34.21667 -33.72414 -32.38043 -30.87952 -29.61676 -28.01055 -27.03114 -26.51847 -24.06419 -23.43467 -22.50457 -21.66288 -21.29666 -21.20834 -20.13704 -18.54963 -18.06544 -17.78199 -17.44897 -17.09520 -16.75326 -16.67432 -16.30126 -16.06743 -15.59806 -15.48719 -15.14117 -14.94291 -14.86782 -14.64723 -14.33592 -14.13403 -14.00735 -13.84808 -13.64023 -13.51933 -13.33277 -13.16411 -12.99687 -12.88491 -12.75802 -12.65906 -12.45352 -12.35804 -12.31334 -11.96613 -11.71630 -11.62206 -11.43981 -11.03377 -10.34172 -10.20308 -10.00440 -9.67376 -9.21980 -8.38900 -5.99358 0.38587 1.31326 1.37326 1.46125 1.58938 1.62284 1.70079 2.01008 2.24981 2.35159 2.63474 3.14452 3.17852 3.26892 3.60424 3.78928 3.93997 4.03082 4.09904 4.13842 4.21553 4.33756 4.37669 4.41283 4.46793 4.54727 4.59064 4.60174 4.63253 4.67000 4.71364 4.80862 4.82946 5.00244 5.01965 5.07532 5.17107 5.31388 5.37165 5.55641 5.57658 5.90770 6.01226 6.16831 6.60555 6.63089 6.69069 6.92438 7.28560 7.44179 8.02574 8.78906 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.002367 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.910761 B =11827.125058 C =13269.685663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.179 3.821 3 N -0.513 5.513 4 C -0.038 4.038 5 C -0.040 4.040 6 C -0.053 4.053 7 C 0.515 3.485 8 O -0.588 6.588 9 N -0.694 5.694 10 C 0.146 3.854 11 H 0.057 0.943 12 C -0.151 4.151 13 C 0.048 3.952 14 N -0.531 5.531 15 C 0.031 3.969 16 C 0.054 3.946 17 C 0.451 3.549 18 O -0.606 6.606 19 N -0.594 5.594 20 C -0.324 4.324 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.938 5.938 24 Si 0.965 3.035 25 H -0.260 1.260 26 H -0.278 1.278 27 H -0.226 1.226 28 O -0.218 6.218 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.205 0.795 33 H 0.122 0.878 34 H 0.169 0.831 35 H 0.416 0.584 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.034 0.966 44 H 0.130 0.870 45 H 0.077 0.923 46 H 0.389 0.611 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 22.390 6.097 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.027 4.027 3 N -0.244 5.244 4 C -0.176 4.176 5 C -0.093 4.093 6 C -0.093 4.093 7 C 0.301 3.699 8 O -0.469 6.469 9 N -0.345 5.345 10 C 0.041 3.959 11 H 0.075 0.925 12 C -0.210 4.210 13 C -0.079 4.079 14 N -0.255 5.255 15 C -0.118 4.118 16 C -0.076 4.076 17 C 0.239 3.761 18 O -0.489 6.489 19 N -0.236 5.236 20 C -0.453 4.453 21 H 0.072 0.928 22 C -0.216 4.216 23 N -0.579 5.579 24 Si 0.785 3.215 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.149 1.149 28 O -0.106 6.106 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.221 0.779 33 H 0.140 0.860 34 H 0.186 0.814 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.148 0.852 45 H 0.095 0.905 46 H 0.225 0.775 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.330 23.429 5.935 24.554 hybrid contribution 0.923 -2.037 0.460 2.283 sum 5.252 21.391 6.395 22.937 Atomic orbital electron populations 1.20517 0.78504 1.06151 1.06215 1.27242 0.98074 0.78114 0.99263 1.70417 1.02834 1.31020 1.20111 1.23383 0.95535 0.93118 1.05516 1.23010 0.83490 0.95419 1.07409 1.20226 0.92391 1.01460 0.95212 1.20643 0.80026 0.78123 0.91070 1.90706 1.54955 1.53925 1.47265 1.45717 1.29243 1.49957 1.09543 1.20980 0.97536 0.94407 0.82996 0.92461 1.22053 0.99670 0.96878 1.02400 1.22596 0.96640 0.88814 0.99882 1.61471 1.06949 1.07236 1.49852 1.22325 0.93463 1.01208 0.94780 1.21868 0.96665 0.89787 0.99321 1.20970 0.87737 0.82923 0.84453 1.90537 1.22829 1.77751 1.57833 1.42044 1.17823 1.15242 1.48480 1.18967 1.01167 0.96641 1.28553 0.92844 1.26130 1.04019 0.94852 0.96634 1.69811 1.40633 1.09096 1.38311 0.85368 0.77086 0.80223 0.78842 1.18485 1.20305 1.14924 1.84390 1.17498 1.38744 1.70002 0.86889 0.88401 0.86963 0.77856 0.86025 0.81371 0.74663 0.90116 0.93838 0.90238 0.87053 0.91563 0.92492 0.93049 0.94768 0.85243 0.90480 0.77529 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.51 71.24 0.75 -0.07 16 2 C 0.18 4.51 8.34 88.34 0.74 5.25 16 3 N -0.51 -14.04 11.29 -303.82 -3.43 -17.47 16 4 C -0.04 -0.92 11.80 83.39 0.98 0.06 16 5 C -0.04 -1.02 5.88 24.79 0.15 -0.88 16 6 C -0.05 -0.99 6.25 29.10 0.18 -0.81 16 7 C 0.51 12.43 7.79 87.66 0.68 13.11 16 8 O -0.59 -19.67 15.70 -3.04 -0.05 -19.72 16 9 N -0.69 -13.32 4.80 -442.52 -2.12 -15.44 16 10 C 0.15 2.72 2.35 44.99 0.11 2.83 16 11 H 0.06 1.45 6.23 -2.39 -0.01 1.43 16 12 C -0.15 -2.12 9.48 71.98 0.68 -1.44 16 13 C 0.05 0.78 4.52 86.30 0.39 1.17 16 14 N -0.53 -13.68 4.22 -927.05 -3.92 -17.60 16 15 C 0.03 0.93 8.96 127.69 1.14 2.08 16 16 C 0.05 1.44 5.45 85.56 0.47 1.91 16 17 C 0.45 19.02 7.47 87.66 0.66 19.68 16 18 O -0.61 -31.95 13.91 -3.08 -0.04 -31.99 16 19 N -0.59 -26.59 5.09 -306.97 -1.56 -28.15 16 20 C -0.32 -18.49 10.16 84.04 0.85 -17.63 16 21 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 22 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 23 N -0.94 -55.99 13.96 21.66 0.30 -55.69 16 24 Si 0.96 37.55 27.74 68.60 1.90 39.45 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.23 -7.16 6.52 99.48 0.65 -6.51 16 28 O -0.22 -6.33 10.78 -3.76 -0.04 -6.37 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.20 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.42 6.32 8.60 -92.71 -0.80 5.52 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 1.20 7.93 -2.38 -0.02 1.18 16 40 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 41 H 0.06 1.76 6.58 -2.39 -0.02 1.75 16 42 H 0.05 2.05 5.82 -2.39 -0.01 2.03 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.13 2.50 7.93 -2.39 -0.02 2.48 16 45 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 46 H 0.39 14.20 5.76 -92.72 -0.53 13.66 16 47 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -89.85 394.82 -1.10 -90.95 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.38 Total: 37.30 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 8.25 Total: 24.74 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -10.73 Total: -134.35 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -0.13 Total: -58.08 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.90 Total: 39.45 kcal Total: -89.85 -1.10 -90.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569122224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.741 kcal (2) G-P(sol) polarization free energy of solvation -89.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds