Wall clock time and date at job start Tue Mar 31 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47542 * 2 1 4 4 N 1.46497 * 109.44603 * 305.19057 * 3 2 1 5 5 C 1.36938 * 120.00291 * 296.06549 * 4 3 2 6 6 H 1.08008 * 119.99298 * 5.52469 * 5 4 3 7 7 C 1.38808 * 120.00410 * 185.52563 * 5 4 3 8 8 N 1.31617 * 119.99995 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00086 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47251 * 89.99670 * 9 7 5 11 11 H 1.48507 * 109.47114 * 209.99617 * 9 7 5 12 12 H 1.48501 * 109.46953 * 329.99443 * 9 7 5 13 13 C 1.53045 * 109.45964 * 185.22304 * 3 2 1 14 14 C 1.53190 * 109.31011 * 178.61352 * 13 3 2 15 15 N 1.46929 * 108.77714 * 54.63831 * 14 13 3 16 16 C 1.34766 * 120.63692 * 126.36510 * 15 14 13 17 17 O 1.21291 * 119.99871 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00407 * 179.97438 * 16 15 14 19 19 N 1.46504 * 109.47137 * 180.02562 * 18 16 15 20 20 C 1.34770 * 124.17764 * 89.99969 * 19 18 16 21 21 O 1.21235 * 127.15488 * 359.70312 * 20 19 18 22 22 C 1.51581 * 105.68448 * 179.97438 * 20 19 18 23 23 N 1.47309 * 103.59375 * 0.02562 * 22 20 19 24 24 C 1.33787 * 124.17805 * 269.96352 * 19 18 16 25 25 O 1.21541 * 123.77404 * 0.03083 * 24 19 18 26 26 C 1.46935 * 118.73367 * 306.64197 * 15 14 13 27 27 C 1.52761 * 109.00934 * 53.30841 * 26 15 14 28 28 H 1.09002 * 109.47141 * 294.16246 * 1 2 3 29 29 H 1.09004 * 109.46848 * 54.15239 * 1 2 3 30 30 H 1.08996 * 109.47835 * 174.15790 * 1 2 3 31 31 H 1.09004 * 109.46836 * 239.99725 * 2 1 3 32 32 H 1.09004 * 109.46899 * 120.00023 * 2 1 3 33 33 H 0.97002 * 120.00446 * 116.07571 * 4 3 2 34 34 H 0.97002 * 120.00640 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.49550 * 58.66612 * 13 3 2 36 36 H 1.08998 * 109.49561 * 298.56328 * 13 3 2 37 37 H 1.09000 * 109.58830 * 294.84993 * 14 13 3 38 38 H 1.08996 * 109.58847 * 174.42022 * 14 13 3 39 39 H 1.09002 * 109.47133 * 60.00487 * 18 16 15 40 40 H 1.09000 * 109.46983 * 299.99897 * 18 16 15 41 41 H 1.09000 * 110.59563 * 118.53273 * 22 20 19 42 42 H 1.08999 * 110.59714 * 241.46870 * 22 20 19 43 43 H 0.97001 * 126.68514 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.58197 * 173.14315 * 26 15 14 45 45 H 1.08999 * 109.58802 * 293.56650 * 26 15 14 46 46 H 1.08997 * 109.56145 * 185.55214 * 27 26 15 47 47 H 1.08998 * 109.35688 * 65.49928 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4521 2.1677 -1.1289 5 6 1.7400 1.7865 -2.4123 6 1 2.3275 0.8984 -2.5928 7 6 1.2769 2.5415 -3.4811 8 7 0.5606 3.6235 -3.2610 9 14 1.6690 2.0211 -5.2317 10 1 0.6021 1.1163 -5.7299 11 1 1.7442 3.2232 -6.1004 12 1 2.9726 1.3101 -5.2565 13 6 3.5649 1.4440 -0.1314 14 6 4.0688 2.8902 -0.1658 15 7 3.5647 3.5952 1.0206 16 6 4.4107 4.2437 1.8452 17 8 5.6007 4.2496 1.6109 18 6 3.8780 4.9626 3.0579 19 7 4.9885 5.5831 3.7846 20 6 5.4391 6.8324 3.5556 21 8 5.0213 7.6229 2.7368 22 6 6.5814 7.0411 4.5298 23 7 6.6485 5.7653 5.2632 24 6 5.6800 4.9799 4.7582 25 8 5.4586 3.8484 5.1429 26 6 2.1212 3.5744 1.2944 27 6 1.6384 2.1252 1.3094 28 1 -0.3633 0.4207 0.9376 29 1 -0.3633 0.6019 -0.8330 30 1 -0.3634 -1.0222 -0.1046 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.8590 2.9181 -0.9675 34 1 0.2366 4.1510 -4.0078 35 1 3.8511 0.9370 -1.0527 36 1 4.0040 0.9260 0.7212 37 1 3.7032 3.3833 -1.0666 38 1 5.1588 2.8977 -0.1595 39 1 3.3703 4.2506 3.7085 40 1 3.1743 5.7333 2.7434 41 1 7.5131 7.2249 3.9947 42 1 6.3600 7.8637 5.2099 43 1 7.2696 5.5363 5.9722 44 1 1.9266 4.0331 2.2638 45 1 1.5936 4.1244 0.5151 46 1 0.5537 2.1030 1.4135 47 1 2.0957 1.6008 2.1484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570263391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:35 Heat of formation + Delta-G solvation = -79.640288 kcal Electronic energy + Delta-G solvation = -31083.178315 eV Core-core repulsion = 26880.533730 eV Total energy + Delta-G solvation = -4202.644586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.40188 -41.31396 -39.68641 -39.45407 -37.20345 -36.29272 -35.70341 -34.44364 -32.52770 -31.52757 -30.97753 -29.65431 -28.42807 -26.36970 -25.58007 -24.24119 -23.96075 -23.16190 -21.90380 -20.70821 -19.67475 -19.09276 -18.93990 -18.69152 -17.87824 -17.62323 -17.02935 -16.68988 -16.36837 -16.26558 -16.12183 -15.69693 -15.37725 -15.36420 -15.29071 -14.98419 -14.77102 -14.72242 -14.39403 -14.11865 -13.93000 -13.49702 -13.31410 -13.05571 -12.91375 -12.84311 -12.56016 -12.29984 -12.19709 -12.16911 -12.05823 -11.82936 -11.67023 -11.50175 -11.38951 -11.37541 -10.96544 -10.79989 -10.64271 -10.39741 -9.66726 -8.82625 -7.84716 -5.08016 0.60833 1.01596 1.44359 1.46802 1.49170 1.54552 1.78426 2.13874 2.28786 2.61237 3.03244 3.34827 3.49951 3.71982 3.81639 3.89329 4.05627 4.08815 4.17056 4.23667 4.28728 4.31704 4.32370 4.49099 4.56467 4.63414 4.66109 4.68917 4.78449 4.83672 4.88388 5.07400 5.13375 5.16717 5.29888 5.37346 5.39711 5.53193 5.64330 5.67567 5.77225 5.82617 5.98397 6.31638 6.38900 6.40116 6.98165 7.09035 7.47002 8.23498 8.47706 9.38346 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.003175 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.028382 B = 8817.342278 C = 9668.885462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 C 0.195 3.805 4 N -0.713 5.713 5 C -0.204 4.204 6 H 0.068 0.932 7 C -0.070 4.070 8 N -0.964 5.964 9 Si 0.947 3.053 10 H -0.293 1.293 11 H -0.304 1.304 12 H -0.277 1.277 13 C -0.124 4.124 14 C 0.131 3.869 15 N -0.592 5.592 16 C 0.494 3.506 17 O -0.585 6.585 18 C 0.102 3.898 19 N -0.569 5.569 20 C 0.513 3.487 21 O -0.503 6.503 22 C 0.078 3.922 23 N -0.707 5.707 24 C 0.700 3.300 25 O -0.582 6.582 26 C 0.106 3.894 27 C -0.126 4.126 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.375 0.625 34 H 0.245 0.755 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.170 0.830 43 H 0.456 0.544 44 H 0.116 0.884 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.916 4.927 22.095 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C 0.105 3.895 4 N -0.354 5.354 5 C -0.337 4.337 6 H 0.085 0.915 7 C -0.262 4.262 8 N -0.616 5.616 9 Si 0.779 3.221 10 H -0.221 1.221 11 H -0.232 1.232 12 H -0.202 1.202 13 C -0.164 4.164 14 C 0.009 3.991 15 N -0.324 5.324 16 C 0.282 3.718 17 O -0.466 6.466 18 C -0.023 4.023 19 N -0.314 5.314 20 C 0.303 3.697 21 O -0.375 6.375 22 C -0.048 4.048 23 N -0.372 5.372 24 C 0.400 3.600 25 O -0.459 6.459 26 C -0.016 4.016 27 C -0.164 4.164 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.208 0.792 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.187 0.813 43 H 0.303 0.697 44 H 0.134 0.866 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.209 4.671 21.536 23.516 hybrid contribution 0.119 -0.234 -1.738 1.758 sum 8.328 4.437 19.798 21.931 Atomic orbital electron populations 1.21577 0.95594 1.00419 1.01573 1.21867 0.96685 0.97199 1.00306 1.19818 0.90286 0.91778 0.87650 1.42517 1.55295 1.37016 1.00524 1.19282 1.24957 1.05074 0.84350 0.91456 1.25200 1.02648 0.98138 1.00206 1.69754 1.43021 1.18744 1.30082 0.85513 0.77710 0.76255 0.82580 1.22105 1.23161 1.20228 1.22184 0.98397 0.94768 1.01066 1.21261 0.97910 0.93167 0.86796 1.48098 1.08472 1.50907 1.24909 1.21304 0.86319 0.79239 0.84973 1.90648 1.17413 1.63300 1.75257 1.21627 0.88149 1.00524 0.91994 1.46022 1.33689 1.16735 1.34930 1.21780 0.84182 0.80114 0.83591 1.90834 1.62185 1.48856 1.35599 1.22710 0.98471 0.88969 0.94608 1.45307 1.35557 1.15065 1.41276 1.15976 0.80579 0.84144 0.79279 1.90990 1.71720 1.17764 1.65418 1.21883 0.78377 0.98537 1.02789 1.22032 1.02582 0.94791 0.97027 0.91933 0.94160 0.93497 0.94455 0.91293 0.79174 0.94637 0.92457 0.91697 0.92814 0.91900 0.83425 0.83858 0.83324 0.81294 0.69681 0.86558 0.91854 0.88875 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.41 71.98 0.68 -3.51 16 2 C -0.12 -3.87 4.78 30.59 0.15 -3.73 16 3 C 0.19 6.64 0.44 3.63 0.00 6.64 16 4 N -0.71 -31.11 3.00 -303.22 -0.91 -32.02 16 5 C -0.20 -10.36 8.59 84.03 0.72 -9.64 16 6 H 0.07 3.41 6.78 -2.91 -0.02 3.39 16 7 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 8 N -0.96 -56.36 13.06 21.65 0.28 -56.08 16 9 Si 0.95 45.87 29.55 68.60 2.03 47.90 16 10 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 11 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C -0.12 -4.39 4.64 30.67 0.14 -4.24 16 14 C 0.13 5.02 6.18 86.36 0.53 5.55 16 15 N -0.59 -19.17 2.98 -819.72 -2.44 -21.61 16 16 C 0.49 16.05 7.77 87.66 0.68 16.73 16 17 O -0.59 -23.52 15.84 -3.07 -0.05 -23.57 16 18 C 0.10 2.35 4.53 85.63 0.39 2.74 16 19 N -0.57 -12.86 2.09 -777.20 -1.63 -14.49 16 20 C 0.51 10.38 8.32 87.94 0.73 11.11 16 21 O -0.50 -13.81 17.76 -2.89 -0.05 -13.86 16 22 C 0.08 0.62 7.97 85.76 0.68 1.30 16 23 N -0.71 -8.00 6.58 -480.32 -3.16 -11.17 16 24 C 0.70 15.54 8.62 179.44 1.55 17.09 16 25 O -0.58 -17.38 17.48 -3.84 -0.07 -17.45 16 26 C 0.11 2.82 6.05 86.22 0.52 3.34 16 27 C -0.13 -3.33 4.71 30.53 0.14 -3.18 16 28 H 0.06 1.65 6.83 -2.39 -0.02 1.63 16 29 H 0.04 1.56 7.26 -2.38 -0.02 1.54 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.34 7.56 -2.38 -0.02 1.32 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.84 16 33 H 0.37 17.71 6.61 -92.71 -0.61 17.09 16 34 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.06 2.21 7.22 -2.39 -0.02 2.19 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 2.44 7.62 -2.39 -0.02 2.42 16 38 H 0.06 2.52 7.00 -2.39 -0.02 2.50 16 39 H 0.15 2.71 7.40 -2.39 -0.02 2.69 16 40 H 0.14 2.73 7.82 -2.39 -0.02 2.72 16 41 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.17 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.46 2.51 8.96 -92.71 -0.83 1.68 16 44 H 0.12 2.05 5.93 -2.39 -0.01 2.03 16 45 H 0.06 2.02 7.02 -2.39 -0.02 2.00 16 46 H 0.09 2.26 6.64 -2.39 -0.02 2.24 16 47 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -79.93 375.01 0.97 -78.96 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.42 Total: 26.55 kcal Atomic # 6 Polarization: 29.45 SS G_CDS: 7.39 Total: 36.84 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -7.85 Total: -135.37 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.17 Total: -54.88 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.93 0.97 -78.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570263391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.680 kcal (2) G-P(sol) polarization free energy of solvation -79.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds