Wall clock time and date at job start Tue Mar 31 2020 22:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47058 * 2 1 4 4 C 1.35315 * 126.66744 * 90.00897 * 3 2 1 5 5 C 1.42274 * 103.92180 * 180.24413 * 4 3 2 6 6 C 1.48326 * 126.93640 * 179.75467 * 5 4 3 7 7 O 1.21495 * 120.00375 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00011 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47110 * 34.99761 * 9 8 6 11 11 C 1.52996 * 109.47274 * 274.99948 * 9 8 6 12 12 C 1.52998 * 109.47384 * 154.99270 * 9 8 6 13 13 H 1.09000 * 109.47447 * 295.00464 * 12 9 8 14 14 C 1.53005 * 109.46699 * 55.00020 * 12 9 8 15 15 N 1.46892 * 109.47277 * 174.99701 * 12 9 8 16 16 C 1.46900 * 110.99813 * 155.00411 * 15 12 9 17 17 C 1.50707 * 109.47217 * 180.02562 * 16 15 12 18 18 O 1.21293 * 119.99607 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00014 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99881 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99768 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00041 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47164 * 89.99816 * 24 22 20 26 26 H 1.48498 * 109.47273 * 209.99842 * 24 22 20 27 27 H 1.48497 * 109.46933 * 329.99911 * 24 22 20 28 28 N 1.30987 * 106.12343 * 359.62919 * 5 4 3 29 29 O 1.20907 * 111.43916 * 0.39539 * 28 5 4 30 30 H 1.08995 * 109.47509 * 59.99361 * 1 2 3 31 31 H 1.08996 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46910 * 299.99560 * 1 2 3 33 33 H 1.09008 * 109.46636 * 240.00068 * 2 1 3 34 34 H 1.08995 * 109.47509 * 120.00638 * 2 1 3 35 35 H 1.08002 * 128.03456 * 359.97329 * 4 3 2 36 36 H 0.96994 * 120.00301 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.47554 * 59.99752 * 11 9 8 38 38 H 1.08999 * 109.47560 * 179.97438 * 11 9 8 39 39 H 1.09001 * 109.46900 * 299.99943 * 11 9 8 40 40 H 1.08997 * 109.47339 * 300.00216 * 14 12 9 41 41 H 1.09009 * 109.46902 * 59.99939 * 14 12 9 42 42 H 1.09000 * 109.47333 * 179.97438 * 14 12 9 43 43 H 1.00894 * 111.00637 * 278.96120 * 15 12 9 44 44 H 1.09003 * 109.47025 * 299.99922 * 16 15 12 45 45 H 1.08993 * 109.47633 * 60.00415 * 16 15 12 46 46 H 0.96997 * 120.00147 * 359.97438 * 19 17 16 47 47 H 0.96998 * 120.00166 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7335 3.4216 0.5353 6 6 3.1533 4.6313 1.2841 7 8 3.1492 4.6256 2.4990 8 7 3.5383 5.7371 0.6166 9 6 3.9524 6.9321 1.3562 10 1 4.4716 6.6339 2.2670 11 6 2.7182 7.7597 1.7203 12 6 4.8904 7.7709 0.4859 13 1 5.8088 7.2140 0.3002 14 6 4.2060 8.0844 -0.8461 15 7 5.2103 9.0257 1.1793 16 6 6.4952 9.5688 0.7190 17 6 6.7893 10.8527 1.4513 18 8 6.0057 11.2736 2.2760 19 7 7.9234 11.5326 1.1907 20 6 8.1907 12.7008 1.8566 21 1 7.4926 13.0760 2.5902 22 6 9.3597 13.4021 1.5875 23 7 10.2093 12.9452 0.6951 24 14 9.7242 14.9935 2.4953 25 1 10.4839 14.6932 3.7353 26 1 10.5305 15.8864 1.6248 27 1 8.4478 15.6660 2.8473 28 7 2.6880 3.2775 -0.7658 29 8 2.2986 2.1755 -1.0751 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.2066 1.9140 2.1271 36 1 3.5412 5.7418 -0.3533 37 1 2.0499 7.1621 2.3404 38 1 3.0262 8.6485 2.2709 39 1 2.1990 8.0578 0.8095 40 1 3.9685 7.1533 -1.3606 41 1 3.2875 8.6413 -0.6604 42 1 4.8740 8.6824 -1.4660 43 1 4.4700 9.7015 1.0640 44 1 7.2873 8.8471 0.9192 45 1 6.4443 9.7646 -0.3520 46 1 8.5506 11.1954 0.5320 47 1 11.0252 13.4350 0.5070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570644937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:47 Heat of formation + Delta-G solvation = -16.149636 kcal Electronic energy + Delta-G solvation = -28351.060659 eV Core-core repulsion = 24151.169235 eV Total energy + Delta-G solvation = -4199.891424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.48407 -40.14037 -38.49961 -37.38238 -35.45665 -34.61164 -34.21569 -33.77981 -31.34091 -30.99486 -30.48826 -29.13305 -26.43117 -25.68165 -24.70066 -24.37886 -23.55630 -22.73127 -20.41436 -19.92271 -19.32761 -18.25429 -17.99920 -17.84798 -17.27260 -16.19934 -15.95859 -15.61760 -15.19828 -15.12586 -15.04038 -14.62686 -14.53559 -14.19936 -13.93694 -13.90298 -13.80065 -13.30537 -13.23328 -13.02609 -12.42484 -12.37959 -12.26407 -12.17980 -12.05853 -11.93545 -11.57981 -11.55062 -11.42470 -11.05961 -11.01096 -10.91330 -10.80344 -10.48299 -10.39097 -10.21593 -9.90505 -9.50769 -9.34281 -8.48553 -8.09440 -7.95988 -6.41604 -3.82423 0.72980 1.26623 2.45728 2.66982 2.88832 3.18418 3.27053 3.32875 3.58304 3.90536 3.98420 4.11862 4.33621 4.39721 4.55825 4.58249 4.66349 4.72715 4.76350 4.89525 5.07221 5.09119 5.17455 5.22263 5.26133 5.33351 5.36087 5.36666 5.45896 5.58718 5.59101 5.66073 5.74023 5.83948 5.92568 5.97446 6.04255 6.25004 6.30070 6.36816 7.09035 7.17945 7.55486 7.59247 7.61201 7.84597 8.06324 8.61154 9.18003 9.54214 10.05526 10.76099 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036273 B = 0.001625 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.732445 B =17228.457598 C =17458.168198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.031 4.031 4 C -0.181 4.181 5 C -0.023 4.023 6 C 0.598 3.402 7 O -0.518 6.518 8 N -0.709 5.709 9 C 0.153 3.847 10 H 0.100 0.900 11 C -0.164 4.164 12 C 0.078 3.922 13 H 0.084 0.916 14 C -0.190 4.190 15 N -0.657 5.657 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 N -0.334 5.334 29 O 0.122 5.878 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.181 0.819 36 H 0.403 0.597 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.353 0.647 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.796 -26.320 -6.918 31.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 C -0.094 4.094 4 C -0.204 4.204 5 C -0.182 4.182 6 C 0.381 3.619 7 O -0.391 6.391 8 N -0.362 5.362 9 C 0.049 3.951 10 H 0.118 0.882 11 C -0.222 4.222 12 C -0.033 4.033 13 H 0.102 0.898 14 C -0.249 4.249 15 N -0.290 5.290 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 N -0.035 5.035 29 O 0.046 5.954 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.198 0.802 36 H 0.240 0.760 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.174 0.826 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.540 -25.344 -5.968 30.846 hybrid contribution 0.408 0.608 -0.719 1.026 sum -16.132 -24.736 -6.687 30.279 Atomic orbital electron populations 1.21817 0.93242 1.02977 1.03027 1.20175 0.96809 0.85963 1.05135 1.24553 1.02217 0.97214 0.85393 1.22451 1.04817 0.91493 1.01600 1.23573 1.06397 0.98057 0.90159 1.16852 0.77632 0.80990 0.86419 1.90828 1.53155 1.82770 1.12383 1.46103 1.66510 1.12739 1.10847 1.21008 0.95552 0.83119 0.95459 0.88167 1.22188 0.97239 1.01089 1.01681 1.21709 0.97892 0.92703 0.91031 0.89821 1.22630 1.01946 1.01908 0.98445 1.60009 1.04835 1.05607 1.58568 1.21710 0.92558 0.96840 0.97041 1.19783 0.84103 0.86486 0.87030 1.90528 1.48826 1.70217 1.37088 1.41854 1.18643 1.21918 1.37578 1.19711 1.05024 0.98481 1.19709 0.87894 1.25258 0.95681 0.99856 0.97108 1.69611 1.11427 1.40236 1.33043 0.85855 0.78582 0.80939 0.78898 1.20379 1.20954 1.19423 1.74170 1.14197 0.99480 1.15605 1.84773 1.59878 1.17210 1.33502 0.91946 0.91024 0.91920 0.89002 0.88138 0.80168 0.76002 0.92474 0.89639 0.92726 0.92483 0.91537 0.91774 0.82585 0.89532 0.93700 0.77474 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.89 37.16 0.37 -0.04 16 2 C -0.04 -0.12 6.50 -27.88 -0.18 -0.31 16 3 C -0.03 -0.20 6.73 -35.35 -0.24 -0.44 16 4 C -0.18 -1.54 10.92 -39.07 -0.43 -1.96 16 5 C -0.02 -0.25 7.19 -82.53 -0.59 -0.84 16 6 C 0.60 7.62 7.81 -12.11 -0.09 7.52 16 7 O -0.52 -8.10 16.61 5.37 0.09 -8.01 16 8 N -0.71 -7.92 4.99 -54.60 -0.27 -8.20 16 9 C 0.15 1.88 2.63 -67.93 -0.18 1.71 16 10 H 0.10 1.47 7.58 -51.93 -0.39 1.07 16 11 C -0.16 -1.99 8.86 37.16 0.33 -1.66 16 12 C 0.08 0.94 2.64 -67.72 -0.18 0.76 16 13 H 0.08 1.00 7.80 -51.93 -0.40 0.59 16 14 C -0.19 -1.91 8.68 37.16 0.32 -1.59 16 15 N -0.66 -10.23 5.23 -107.99 -0.56 -10.80 16 16 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 17 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 18 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 19 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 28 N -0.33 -3.45 11.84 33.29 0.39 -3.05 16 29 O 0.12 1.04 11.18 17.23 0.19 1.24 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 34 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.40 3.90 6.34 -40.82 -0.26 3.64 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.14 7.13 -51.93 -0.37 0.77 16 39 H 0.05 0.59 6.56 -51.93 -0.34 0.24 16 40 H 0.06 0.48 6.29 -51.93 -0.33 0.16 16 41 H 0.07 0.66 6.55 -51.92 -0.34 0.32 16 42 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 43 H 0.35 5.65 7.39 -39.30 -0.29 5.36 16 44 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 45 H 0.05 0.69 7.43 -51.93 -0.39 0.31 16 46 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -33.37 394.52 -6.42 -39.79 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -6.71 Total: 14.56 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.23 Total: 6.23 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.22 Total: -60.21 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.37 Total: -22.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.37 -6.42 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570644937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.641 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds