Wall clock time and date at job start Tue Mar 31 2020 22:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47058 * 2 1 4 4 C 1.35315 * 126.66744 * 90.00897 * 3 2 1 5 5 C 1.42274 * 103.92180 * 180.24413 * 4 3 2 6 6 C 1.48326 * 126.93640 * 179.75467 * 5 4 3 7 7 O 1.21495 * 120.00375 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00011 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47110 * 34.99761 * 9 8 6 11 11 C 1.52996 * 109.47274 * 274.99948 * 9 8 6 12 12 C 1.52998 * 109.47384 * 154.99270 * 9 8 6 13 13 H 1.09000 * 109.47447 * 295.00464 * 12 9 8 14 14 C 1.53005 * 109.46699 * 55.00020 * 12 9 8 15 15 N 1.46892 * 109.47277 * 174.99701 * 12 9 8 16 16 C 1.46900 * 110.99813 * 155.00411 * 15 12 9 17 17 C 1.50707 * 109.47217 * 180.02562 * 16 15 12 18 18 O 1.21293 * 119.99607 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00014 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99881 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99768 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00041 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47164 * 89.99816 * 24 22 20 26 26 H 1.48498 * 109.47273 * 209.99842 * 24 22 20 27 27 H 1.48497 * 109.46933 * 329.99911 * 24 22 20 28 28 N 1.30987 * 106.12343 * 359.62919 * 5 4 3 29 29 O 1.20907 * 111.43916 * 0.39539 * 28 5 4 30 30 H 1.08995 * 109.47509 * 59.99361 * 1 2 3 31 31 H 1.08996 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46910 * 299.99560 * 1 2 3 33 33 H 1.09008 * 109.46636 * 240.00068 * 2 1 3 34 34 H 1.08995 * 109.47509 * 120.00638 * 2 1 3 35 35 H 1.08002 * 128.03456 * 359.97329 * 4 3 2 36 36 H 0.96994 * 120.00301 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.47554 * 59.99752 * 11 9 8 38 38 H 1.08999 * 109.47560 * 179.97438 * 11 9 8 39 39 H 1.09001 * 109.46900 * 299.99943 * 11 9 8 40 40 H 1.08997 * 109.47339 * 300.00216 * 14 12 9 41 41 H 1.09009 * 109.46902 * 59.99939 * 14 12 9 42 42 H 1.09000 * 109.47333 * 179.97438 * 14 12 9 43 43 H 1.00894 * 111.00637 * 278.96120 * 15 12 9 44 44 H 1.09003 * 109.47025 * 299.99922 * 16 15 12 45 45 H 1.08993 * 109.47633 * 60.00415 * 16 15 12 46 46 H 0.96997 * 120.00147 * 359.97438 * 19 17 16 47 47 H 0.96998 * 120.00166 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7335 3.4216 0.5353 6 6 3.1533 4.6313 1.2841 7 8 3.1492 4.6256 2.4990 8 7 3.5383 5.7371 0.6166 9 6 3.9524 6.9321 1.3562 10 1 4.4716 6.6339 2.2670 11 6 2.7182 7.7597 1.7203 12 6 4.8904 7.7709 0.4859 13 1 5.8088 7.2140 0.3002 14 6 4.2060 8.0844 -0.8461 15 7 5.2103 9.0257 1.1793 16 6 6.4952 9.5688 0.7190 17 6 6.7893 10.8527 1.4513 18 8 6.0057 11.2736 2.2760 19 7 7.9234 11.5326 1.1907 20 6 8.1907 12.7008 1.8566 21 1 7.4926 13.0760 2.5902 22 6 9.3597 13.4021 1.5875 23 7 10.2093 12.9452 0.6951 24 14 9.7242 14.9935 2.4953 25 1 10.4839 14.6932 3.7353 26 1 10.5305 15.8864 1.6248 27 1 8.4478 15.6660 2.8473 28 7 2.6880 3.2775 -0.7658 29 8 2.2986 2.1755 -1.0751 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.2066 1.9140 2.1271 36 1 3.5412 5.7418 -0.3533 37 1 2.0499 7.1621 2.3404 38 1 3.0262 8.6485 2.2709 39 1 2.1990 8.0578 0.8095 40 1 3.9685 7.1533 -1.3606 41 1 3.2875 8.6413 -0.6604 42 1 4.8740 8.6824 -1.4660 43 1 4.4700 9.7015 1.0640 44 1 7.2873 8.8471 0.9192 45 1 6.4443 9.7646 -0.3520 46 1 8.5506 11.1954 0.5320 47 1 11.0252 13.4350 0.5070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570644937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:46 Heat of formation + Delta-G solvation = -41.180565 kcal Electronic energy + Delta-G solvation = -28352.146082 eV Core-core repulsion = 24151.169235 eV Total energy + Delta-G solvation = -4200.976847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.19073 -41.16866 -40.19351 -38.67022 -36.11084 -35.86296 -35.52253 -34.91703 -33.28360 -32.12304 -31.09358 -30.13334 -28.02531 -26.57189 -25.99805 -25.06563 -24.65319 -23.44555 -21.29240 -21.16443 -20.91350 -19.93861 -18.95392 -18.64545 -18.15743 -17.65044 -17.19083 -16.92367 -16.43551 -16.24515 -16.06593 -15.70815 -15.56503 -15.41933 -15.17331 -15.01146 -14.74946 -14.37492 -14.18105 -13.95243 -13.51982 -13.49789 -13.38253 -13.23730 -13.12654 -12.92863 -12.88803 -12.62974 -12.41946 -12.41199 -12.12443 -11.98647 -11.93220 -11.85256 -11.60365 -11.52544 -11.50842 -10.49076 -10.41339 -10.29141 -10.01615 -9.36199 -8.46951 -5.95602 -0.02795 0.61894 1.37805 1.41691 1.54165 1.66434 1.95881 1.98679 2.05159 2.29217 2.76200 2.96367 3.20497 3.43535 3.50670 3.70437 3.81192 3.88461 4.06693 4.14754 4.16639 4.27423 4.35682 4.37216 4.43809 4.44722 4.48147 4.59383 4.65023 4.71667 4.77371 4.89367 4.92057 4.96078 5.07997 5.13000 5.14552 5.29860 5.35238 5.40905 5.40933 5.85328 6.06530 6.20588 6.36530 6.59846 6.83847 6.97322 7.12491 7.56069 8.11411 8.70356 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036273 B = 0.001625 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.732445 B =17228.457598 C =17458.168198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.010 4.010 4 C -0.197 4.197 5 C -0.045 4.045 6 C 0.596 3.404 7 O -0.555 6.555 8 N -0.696 5.696 9 C 0.158 3.842 10 H 0.074 0.926 11 C -0.157 4.157 12 C 0.085 3.915 13 H 0.090 0.910 14 C -0.185 4.185 15 N -0.672 5.672 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 N -0.345 5.345 29 O 0.126 5.874 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.190 0.810 36 H 0.413 0.587 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.350 0.650 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 -27.948 -8.461 33.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.073 4.073 4 C -0.220 4.220 5 C -0.203 4.203 6 C 0.381 3.619 7 O -0.431 6.431 8 N -0.350 5.350 9 C 0.054 3.946 10 H 0.092 0.908 11 C -0.215 4.215 12 C -0.026 4.026 13 H 0.108 0.892 14 C -0.244 4.244 15 N -0.305 5.305 16 C -0.065 4.065 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.097 0.903 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.198 1.198 28 N -0.045 5.045 29 O 0.049 5.951 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.207 0.793 36 H 0.251 0.749 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.170 0.830 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.806 -26.985 -7.561 32.678 hybrid contribution 0.427 0.994 -0.259 1.113 sum -16.379 -25.991 -7.820 31.701 Atomic orbital electron populations 1.21827 0.92903 1.03966 1.02333 1.20441 0.96886 0.83579 1.07003 1.25180 1.00060 0.98054 0.84030 1.22667 1.05587 0.91010 1.02688 1.23460 1.07953 0.98177 0.90708 1.17123 0.76990 0.81655 0.86132 1.90802 1.54851 1.83507 1.13967 1.45961 1.65806 1.12047 1.11168 1.20812 0.95494 0.83524 0.94800 0.90800 1.22101 0.97054 1.00207 1.02122 1.21675 0.98324 0.90929 0.91655 0.89161 1.22568 1.01801 1.02976 0.97015 1.59942 1.04085 1.06543 1.59940 1.21552 0.93855 0.93689 0.97454 1.20868 0.82693 0.87697 0.86246 1.90498 1.49855 1.71678 1.38856 1.41916 1.19511 1.21739 1.37824 1.19674 1.05671 1.00353 1.20758 0.90337 1.26017 0.94963 1.02569 0.97594 1.69668 1.11647 1.41284 1.33455 0.84939 0.78237 0.77221 0.78008 1.19780 1.19471 1.19766 1.74155 1.14722 1.00390 1.15209 1.84745 1.59321 1.16904 1.34138 0.92612 0.89211 0.92689 0.87154 0.86231 0.79278 0.74852 0.93505 0.91017 0.90949 0.90531 0.91299 0.91537 0.82950 0.87945 0.90993 0.76958 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.89 71.98 0.71 0.25 16 2 C -0.04 -0.12 6.50 29.85 0.19 0.07 16 3 C -0.01 -0.12 6.73 25.01 0.17 0.05 16 4 C -0.20 -3.18 10.92 22.60 0.25 -2.93 16 5 C -0.05 -0.97 7.19 42.96 0.31 -0.66 16 6 C 0.60 15.35 7.81 86.93 0.68 16.03 16 7 O -0.55 -17.96 16.61 -3.70 -0.06 -18.02 16 8 N -0.70 -15.24 4.99 -444.95 -2.22 -17.46 16 9 C 0.16 3.90 2.63 44.99 0.12 4.01 16 10 H 0.07 2.24 7.58 -2.39 -0.02 2.22 16 11 C -0.16 -3.83 8.86 71.98 0.64 -3.19 16 12 C 0.08 1.93 2.64 44.92 0.12 2.05 16 13 H 0.09 1.98 7.80 -2.39 -0.02 1.96 16 14 C -0.18 -3.29 8.68 71.98 0.62 -2.66 16 15 N -0.67 -20.54 5.23 -495.58 -2.59 -23.13 16 16 C 0.07 2.23 5.97 85.56 0.51 2.74 16 17 C 0.44 20.74 7.82 87.66 0.69 21.43 16 18 O -0.62 -34.53 15.78 -3.07 -0.05 -34.58 16 19 N -0.57 -29.40 5.29 -306.98 -1.62 -31.02 16 20 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 23 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 24 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 28 N -0.34 -6.77 11.84 -49.51 -0.59 -7.35 16 29 O 0.13 1.96 11.18 71.83 0.80 2.76 16 30 H 0.05 0.25 8.14 -2.39 -0.02 0.24 16 31 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.05 0.26 8.14 -2.39 -0.02 0.25 16 33 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 34 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.41 7.41 6.34 -92.71 -0.59 6.82 16 37 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.07 1.96 7.13 -2.39 -0.02 1.95 16 39 H 0.07 1.49 6.56 -2.39 -0.02 1.47 16 40 H 0.08 1.08 6.29 -2.39 -0.02 1.06 16 41 H 0.07 1.22 6.55 -2.38 -0.02 1.20 16 42 H 0.07 1.19 7.45 -2.39 -0.02 1.18 16 43 H 0.35 11.11 7.39 -89.70 -0.66 10.45 16 44 H 0.10 3.14 8.06 -2.39 -0.02 3.12 16 45 H 0.07 2.05 7.43 -2.39 -0.02 2.03 16 46 H 0.40 19.27 7.90 -92.71 -0.73 18.53 16 47 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -73.89 394.52 1.32 -72.57 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: -0.95 Total: 41.70 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 6.29 Total: 18.70 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -6.74 Total: -128.37 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: 0.69 Total: -49.84 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -73.89 1.32 -72.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570644937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.388 kcal (2) G-P(sol) polarization free energy of solvation -73.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds