Wall clock time and date at job start Tue Mar 31 2020 22:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47246 * 2 1 4 4 C 1.35321 * 126.66482 * 89.99496 * 3 2 1 5 5 C 1.42273 * 103.91890 * 179.97438 * 4 3 2 6 6 C 1.48334 * 126.93873 * 180.02562 * 5 4 3 7 7 O 1.21491 * 119.99828 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99991 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99830 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46938 * 325.00225 * 9 8 6 11 11 C 1.53000 * 109.46861 * 85.00099 * 9 8 6 12 12 C 1.52997 * 109.47004 * 205.00136 * 9 8 6 13 13 H 1.08993 * 109.47194 * 64.99579 * 12 9 8 14 14 C 1.53006 * 109.47127 * 304.99736 * 12 9 8 15 15 N 1.46902 * 109.47094 * 185.00358 * 12 9 8 16 16 C 1.46904 * 110.99949 * 205.00250 * 15 12 9 17 17 C 1.50702 * 109.47107 * 179.97438 * 16 15 12 18 18 O 1.21292 * 119.99798 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99799 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99562 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00283 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99450 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99511 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47319 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47263 * 119.99953 * 24 22 20 27 27 H 1.48507 * 109.46882 * 239.99776 * 24 22 20 28 28 N 1.30992 * 106.12627 * 0.25956 * 5 4 3 29 29 O 1.20904 * 111.43397 * 359.53986 * 28 5 4 30 30 H 1.09003 * 109.47107 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47190 * 300.00691 * 1 2 3 32 32 H 1.09000 * 109.46884 * 60.00285 * 1 2 3 33 33 H 1.08995 * 109.47569 * 239.99645 * 2 1 3 34 34 H 1.09000 * 109.46884 * 119.99715 * 2 1 3 35 35 H 1.07989 * 128.04156 * 359.95972 * 4 3 2 36 36 H 0.97001 * 120.00108 * 359.97438 * 8 6 5 37 37 H 1.08994 * 109.47725 * 60.00045 * 11 9 8 38 38 H 1.09002 * 109.46818 * 179.97438 * 11 9 8 39 39 H 1.08999 * 109.47412 * 299.99210 * 11 9 8 40 40 H 1.09001 * 109.46801 * 300.00272 * 14 12 9 41 41 H 1.09001 * 109.46998 * 59.99868 * 14 12 9 42 42 H 1.09000 * 109.47050 * 180.02562 * 14 12 9 43 43 H 1.00896 * 111.00544 * 81.04158 * 15 12 9 44 44 H 1.09002 * 109.46523 * 299.99312 * 16 15 12 45 45 H 1.08997 * 109.46880 * 59.99279 * 16 15 12 46 46 H 0.96997 * 120.00155 * 0.02562 * 19 17 16 47 47 H 0.97002 * 119.99553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3016 2.1826 1.0855 5 6 2.7396 3.4195 0.5354 6 6 3.1672 4.6265 1.2841 7 8 3.1646 4.6203 2.4990 8 7 3.5586 5.7301 0.6166 9 6 3.9803 6.9223 1.3562 10 1 3.3869 7.0144 2.2659 11 6 5.4604 6.7978 1.7231 12 6 3.7735 8.1627 0.4846 13 1 2.7089 8.3014 0.2968 14 6 4.5064 7.9791 -0.8459 15 7 4.3063 9.3429 1.1782 16 6 3.6429 10.5694 0.7159 17 6 4.2140 11.7561 1.4485 18 8 5.0873 11.5959 2.2748 19 7 3.7543 12.9954 1.1854 20 6 4.2734 14.0750 1.8523 21 1 5.0510 13.9323 2.5881 22 6 3.7990 15.3526 1.5815 23 7 2.8525 15.5261 0.6865 24 14 4.5068 16.8235 2.4896 25 1 5.5521 16.3633 3.4387 26 1 5.1061 17.7673 1.5121 27 1 3.4246 17.5094 3.2403 28 7 2.6843 3.2789 -0.7658 29 8 2.2998 2.1751 -1.0750 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2060 1.9143 2.1271 36 1 3.5610 5.7349 -0.3534 37 1 6.0538 6.7057 0.8135 38 1 5.7743 7.6851 2.2729 39 1 5.6077 5.9142 2.3441 40 1 5.5711 7.8403 -0.6580 41 1 4.1111 7.1033 -1.3606 42 1 4.3594 8.8629 -1.4666 43 1 5.3068 9.4081 1.0648 44 1 3.8072 10.6896 -0.3550 45 1 2.5733 10.5007 0.9140 46 1 3.0556 13.1235 0.5249 47 1 2.5217 16.4181 0.4972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570644939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:50 Heat of formation + Delta-G solvation = -41.258733 kcal Electronic energy + Delta-G solvation = -28357.766275 eV Core-core repulsion = 24156.786039 eV Total energy + Delta-G solvation = -4200.980236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.19112 -41.16884 -40.19559 -38.67069 -36.11217 -35.86302 -35.52299 -34.91665 -33.28525 -32.12313 -31.09424 -30.13306 -28.02706 -26.57118 -25.99987 -25.06620 -24.65370 -23.44488 -21.29335 -21.16635 -20.91377 -19.94092 -18.96291 -18.63229 -18.15767 -17.65601 -17.19565 -16.92388 -16.43809 -16.23840 -16.08103 -15.70451 -15.53860 -15.42199 -15.17781 -15.02689 -14.74982 -14.38129 -14.17432 -13.94989 -13.52499 -13.50679 -13.38283 -13.23745 -13.12692 -12.92814 -12.88900 -12.63096 -12.41269 -12.40804 -12.12004 -11.98649 -11.93829 -11.84548 -11.60500 -11.52619 -11.51527 -10.49047 -10.41409 -10.29205 -10.01690 -9.36260 -8.47330 -5.95856 -0.02780 0.61881 1.36198 1.41663 1.55710 1.66418 1.95811 1.98791 2.04891 2.29085 2.76194 2.96280 3.20152 3.43545 3.50568 3.70398 3.81181 3.88468 4.06707 4.14715 4.16653 4.27316 4.35696 4.37244 4.43678 4.44710 4.48127 4.59278 4.65108 4.71706 4.77367 4.89376 4.92131 4.96128 5.07862 5.13045 5.14585 5.29880 5.35331 5.41035 5.41056 5.85237 6.06483 6.20574 6.36481 6.59621 6.83847 6.97342 7.12403 7.55918 8.11229 8.70226 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031017 B = 0.001642 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.519409 B =17052.962968 C =17264.346510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.010 4.010 4 C -0.197 4.197 5 C -0.045 4.045 6 C 0.596 3.404 7 O -0.555 6.555 8 N -0.696 5.696 9 C 0.158 3.842 10 H 0.074 0.926 11 C -0.157 4.157 12 C 0.085 3.915 13 H 0.090 0.910 14 C -0.185 4.185 15 N -0.672 5.672 16 C 0.067 3.933 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.272 1.272 28 N -0.345 5.345 29 O 0.126 5.874 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.190 0.810 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.350 0.650 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 -32.292 -8.450 33.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 C -0.073 4.073 4 C -0.219 4.219 5 C -0.203 4.203 6 C 0.381 3.619 7 O -0.431 6.431 8 N -0.350 5.350 9 C 0.054 3.946 10 H 0.092 0.908 11 C -0.215 4.215 12 C -0.026 4.026 13 H 0.108 0.892 14 C -0.244 4.244 15 N -0.305 5.305 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 N -0.045 5.045 29 O 0.049 5.951 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.207 0.793 36 H 0.252 0.748 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.171 0.829 44 H 0.090 0.910 45 H 0.120 0.880 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.335 -31.373 -7.545 32.558 hybrid contribution 0.239 1.064 -0.270 1.124 sum -4.096 -30.309 -7.815 31.567 Atomic orbital electron populations 1.21831 0.92963 1.03963 1.02317 1.20438 0.96832 0.83579 1.07021 1.25182 1.00010 0.98108 0.84030 1.22665 1.05477 0.91119 1.02687 1.23464 1.07901 0.98230 0.90709 1.17125 0.76817 0.81826 0.86131 1.90801 1.55294 1.83060 1.13970 1.45962 1.65518 1.12337 1.11168 1.20812 0.96421 0.82613 0.94782 0.90813 1.22101 0.95056 1.02200 1.02128 1.21676 1.00378 0.88871 0.91663 0.89179 1.22567 1.01609 1.03159 0.97021 1.59946 1.10173 1.00504 1.59895 1.21553 0.99899 0.87661 0.97440 1.20866 0.85524 0.84851 0.86237 1.90499 1.35696 1.85909 1.38766 1.41924 1.36193 1.05226 1.37682 1.19712 1.20086 0.86003 1.20550 0.90335 1.26025 0.96552 1.01001 0.97628 1.69677 1.28287 1.24711 1.33413 0.84876 0.78138 0.77306 0.78042 1.19848 1.19513 1.19707 1.74158 1.14792 1.00321 1.15208 1.84743 1.59474 1.16744 1.34143 0.89195 0.92719 0.92650 0.87118 0.86202 0.79281 0.74849 0.90940 0.91024 0.93485 0.91285 0.90530 0.91539 0.82944 0.90987 0.87950 0.76959 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.89 71.98 0.71 0.21 16 2 C -0.04 -0.12 6.50 29.85 0.19 0.07 16 3 C -0.01 -0.12 6.73 25.01 0.17 0.05 16 4 C -0.20 -3.18 10.92 22.60 0.25 -2.93 16 5 C -0.05 -0.97 7.19 42.96 0.31 -0.66 16 6 C 0.60 15.35 7.81 86.93 0.68 16.03 16 7 O -0.55 -17.96 16.61 -3.69 -0.06 -18.02 16 8 N -0.70 -15.24 4.99 -444.94 -2.22 -17.46 16 9 C 0.16 3.90 2.63 44.99 0.12 4.01 16 10 H 0.07 2.24 7.58 -2.39 -0.02 2.22 16 11 C -0.16 -3.83 8.86 71.98 0.64 -3.19 16 12 C 0.08 1.93 2.64 44.92 0.12 2.05 16 13 H 0.09 1.98 7.80 -2.39 -0.02 1.96 16 14 C -0.18 -3.29 8.68 71.98 0.62 -2.66 16 15 N -0.67 -20.54 5.23 -495.56 -2.59 -23.14 16 16 C 0.07 2.23 5.97 85.56 0.51 2.74 16 17 C 0.44 20.76 7.82 87.66 0.69 21.44 16 18 O -0.62 -34.53 15.78 -3.07 -0.05 -34.58 16 19 N -0.57 -29.42 5.29 -306.98 -1.62 -31.04 16 20 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 23 N -0.92 -49.73 13.05 21.66 0.28 -49.44 16 24 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 28 N -0.34 -6.77 11.84 -49.51 -0.59 -7.35 16 29 O 0.13 1.96 11.18 71.88 0.80 2.76 16 30 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.19 2.57 8.06 -2.92 -0.02 2.54 16 36 H 0.41 7.41 6.34 -92.71 -0.59 6.82 16 37 H 0.07 1.48 6.56 -2.39 -0.02 1.47 16 38 H 0.07 1.96 7.13 -2.39 -0.02 1.94 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.22 6.55 -2.39 -0.02 1.20 16 41 H 0.08 1.08 6.29 -2.39 -0.02 1.06 16 42 H 0.07 1.19 7.45 -2.39 -0.02 1.18 16 43 H 0.35 11.11 7.39 -89.70 -0.66 10.45 16 44 H 0.07 2.05 7.44 -2.39 -0.02 2.04 16 45 H 0.10 3.14 8.05 -2.39 -0.02 3.12 16 46 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 47 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -74.00 394.52 1.32 -72.68 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -0.95 Total: 41.62 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 6.29 Total: 18.70 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -6.74 Total: -128.43 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: 0.69 Total: -49.84 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -74.00 1.32 -72.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570644939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.418 kcal (2) G-P(sol) polarization free energy of solvation -74.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds