Wall clock time and date at job start Tue Mar 31 2020 21:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31879 * 119.92915 * 2 1 4 4 N 1.28276 * 122.62181 * 180.02562 * 3 2 1 5 5 C 1.32491 * 122.22227 * 359.97438 * 4 3 2 6 6 O 1.35444 * 120.25420 * 180.02562 * 5 4 3 7 7 C 1.40454 * 119.49173 * 0.02562 * 5 4 3 8 8 C 1.47816 * 121.18086 * 179.97438 * 7 5 4 9 9 O 1.21557 * 119.99897 * 89.99920 * 8 7 5 10 10 N 1.34777 * 120.00174 * 270.00561 * 8 7 5 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47035 * 179.97438 * 11 10 8 13 13 O 1.42903 * 109.47256 * 64.99491 * 12 11 10 14 14 C 1.42894 * 114.00108 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47393 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47202 * 180.02562 * 15 14 13 17 17 N 1.46492 * 109.46973 * 180.02562 * 16 15 14 18 18 C 1.36945 * 120.00126 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99714 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99943 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99984 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99780 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47189 * 90.00053 * 22 20 18 24 24 H 1.48498 * 109.46954 * 210.00482 * 22 20 18 25 25 H 1.48503 * 109.46844 * 330.00080 * 22 20 18 26 26 C 1.38481 * 119.93098 * 180.26086 * 2 1 3 27 27 C 1.50701 * 121.06352 * 0.02562 * 26 2 1 28 28 H 1.09005 * 109.47079 * 90.00375 * 1 2 3 29 29 H 1.09004 * 109.47210 * 209.99769 * 1 2 3 30 30 H 1.08994 * 109.47422 * 329.99873 * 1 2 3 31 31 H 0.96695 * 114.00304 * 269.98163 * 6 5 4 32 32 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 34 34 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 35 35 H 1.08997 * 109.47011 * 184.99706 * 12 11 10 36 36 H 1.09005 * 109.46847 * 304.99833 * 12 11 10 37 37 H 1.08998 * 109.47256 * 300.00496 * 14 13 12 38 38 H 1.09009 * 109.46884 * 60.00274 * 14 13 12 39 39 H 1.08997 * 109.46784 * 300.00191 * 15 14 13 40 40 H 1.09002 * 109.46589 * 60.00229 * 15 14 13 41 41 H 1.09008 * 109.47116 * 300.00189 * 16 15 14 42 42 H 1.08992 * 109.47209 * 59.99883 * 16 15 14 43 43 H 0.96998 * 120.00172 * 359.97438 * 17 16 15 44 44 H 0.97005 * 119.99761 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.46810 * 270.22774 * 27 26 2 46 46 H 1.09002 * 109.47008 * 30.22251 * 27 26 2 47 47 H 1.08993 * 109.47241 * 150.22012 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2032 -0.0005 5 6 4.2047 0.1168 -0.0005 6 8 5.5547 0.2268 -0.0005 7 6 3.5980 -1.1500 -0.0006 8 6 4.4079 -2.3865 -0.0012 9 8 4.7413 -2.8951 1.0513 10 7 4.7768 -2.9499 -1.1686 11 6 5.5800 -4.1751 -1.1691 12 6 5.8584 -4.6018 -2.6119 13 8 6.6717 -3.6162 -3.2516 14 6 6.9922 -3.9201 -4.6106 15 6 7.8617 -2.8033 -5.1916 16 6 8.2043 -3.1284 -6.6469 17 7 9.0373 -2.0593 -7.2029 18 6 9.4704 -2.1331 -8.5000 19 1 9.1974 -2.9793 -9.1131 20 6 10.2593 -1.1198 -9.0270 21 7 10.5915 -0.0884 -8.2800 22 14 10.8494 -1.2202 -10.7965 23 1 9.8550 -0.5704 -11.6876 24 1 12.1558 -0.5255 -10.9228 25 1 11.0066 -2.6446 -11.1858 26 6 2.1980 -1.2001 -0.0055 27 6 1.4673 -2.5181 -0.0120 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 5.9467 0.2585 -0.8838 32 1 4.5105 -2.5442 -2.0085 33 1 6.5238 -3.9911 -0.6558 34 1 5.0352 -4.9670 -0.6551 35 1 6.3791 -5.5594 -2.6135 36 1 4.9156 -4.7000 -3.1500 37 1 7.5366 -4.8635 -4.6533 38 1 6.0730 -4.0045 -5.1905 39 1 7.3176 -1.8598 -5.1489 40 1 8.7807 -2.7194 -4.6116 41 1 8.7482 -4.0721 -6.6900 42 1 7.2851 -3.2120 -7.2266 43 1 9.2821 -1.2991 -6.6524 44 1 11.1431 0.6195 -8.6482 45 1 1.2871 -2.8387 1.0140 46 1 0.5147 -2.4028 -0.5292 47 1 2.0713 -3.2659 -0.5258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571353513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:38 Heat of formation + Delta-G solvation = -94.437002 kcal Electronic energy + Delta-G solvation = -28370.898717 eV Core-core repulsion = 24167.612498 eV Total energy + Delta-G solvation = -4203.286219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.67819 -40.72936 -39.18205 -38.94443 -37.06703 -36.08759 -35.93333 -34.16711 -33.79405 -31.78716 -30.43024 -29.57669 -28.96894 -26.84088 -25.75735 -24.29163 -23.85455 -23.45787 -22.32277 -21.94659 -20.14053 -19.46641 -19.15917 -18.69551 -17.91587 -17.67573 -17.23553 -16.80206 -16.61467 -16.00284 -15.94812 -15.78033 -15.48179 -15.27842 -15.16180 -14.90107 -14.53090 -14.49480 -14.14508 -13.94355 -13.89066 -13.61453 -13.35529 -13.32074 -13.16015 -12.91896 -12.81036 -12.64624 -12.41825 -12.31511 -12.09355 -12.05411 -11.94214 -11.75876 -11.70654 -11.09877 -10.95475 -10.63036 -10.56855 -10.53563 -10.33264 -9.03704 -7.97391 -5.27447 -0.73283 -0.45379 1.13672 1.46992 1.49240 1.57765 1.79772 2.02126 2.23008 2.49025 2.64396 2.93458 3.22881 3.28711 3.36530 3.55907 3.76970 3.82685 4.02512 4.08356 4.08751 4.19084 4.30521 4.35948 4.41535 4.52162 4.54756 4.60993 4.64030 4.72747 4.73323 4.75780 4.76247 4.80286 4.85637 4.94298 5.00301 5.16955 5.30362 5.32163 5.33382 5.47820 6.17491 6.22096 6.24042 6.26568 6.85510 7.30599 7.42241 8.06513 8.28507 9.26373 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.001930 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.776605 B =14505.526845 C =15537.282725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.061 3.939 3 N -0.233 5.233 4 N -0.289 5.289 5 C 0.279 3.721 6 O -0.482 6.482 7 C -0.163 4.163 8 C 0.582 3.418 9 O -0.558 6.558 10 N -0.698 5.698 11 C 0.122 3.878 12 C 0.048 3.952 13 O -0.407 6.407 14 C 0.079 3.921 15 C -0.114 4.114 16 C 0.154 3.846 17 N -0.751 5.751 18 C -0.248 4.248 19 H 0.080 0.920 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.267 1.267 26 C -0.018 4.018 27 C -0.124 4.124 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.425 0.575 32 H 0.415 0.585 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.025 0.975 42 H 0.028 0.972 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.101 0.899 46 H 0.122 0.878 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.378 -10.902 17.612 32.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.085 4.085 3 N -0.077 5.077 4 N -0.140 5.140 5 C 0.092 3.908 6 O -0.291 6.291 7 C -0.178 4.178 8 C 0.366 3.634 9 O -0.437 6.437 10 N -0.349 5.349 11 C -0.001 4.001 12 C -0.028 4.028 13 O -0.328 6.328 14 C 0.002 3.998 15 C -0.152 4.152 16 C 0.028 3.972 17 N -0.394 5.394 18 C -0.380 4.380 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.192 1.192 26 C -0.030 4.030 27 C -0.180 4.180 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.288 0.712 32 H 0.252 0.748 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.046 0.954 43 H 0.204 0.796 44 H 0.060 0.940 45 H 0.120 0.880 46 H 0.141 0.859 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.021 -9.614 18.850 32.769 hybrid contribution 1.316 -0.545 -1.532 2.092 sum -23.705 -10.159 17.318 31.065 Atomic orbital electron populations 1.20961 0.83410 1.05920 1.05650 1.23476 1.01355 0.88391 0.95278 1.72781 0.99818 1.26288 1.08840 1.72999 1.00428 1.27350 1.13181 1.20978 0.86453 0.88611 0.94729 1.84711 1.12996 1.95239 1.36110 1.21351 0.95784 0.94433 1.06269 1.17648 0.78922 0.82571 0.84297 1.90832 1.56383 1.63822 1.32620 1.45871 1.53259 1.27894 1.07918 1.21596 0.95574 0.86437 0.96502 1.22897 0.95859 0.92457 0.91578 1.87874 1.71484 1.47378 1.26018 1.22299 0.98558 0.97204 0.81718 1.21481 0.99772 0.99174 0.94799 1.20683 0.93348 0.90987 0.92209 1.42617 1.61019 1.24132 1.11585 1.19677 1.24436 1.04283 0.89591 0.90257 1.25662 1.01779 0.97032 1.02683 1.69830 1.43050 1.11715 1.37596 0.85081 0.76945 0.77838 0.79535 1.21217 1.22267 1.19150 1.21545 0.90634 0.99521 0.91317 1.21169 1.01919 0.89667 1.05287 0.87434 0.86988 0.89545 0.71203 0.74845 0.91881 0.87760 0.89591 0.90201 0.91963 0.91416 0.92094 0.92553 0.95701 0.95402 0.79562 0.93951 0.88034 0.85918 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 9.42 71.24 0.67 0.13 16 2 C 0.06 0.92 6.86 42.61 0.29 1.21 16 3 N -0.23 -5.38 11.40 -47.73 -0.54 -5.92 16 4 N -0.29 -7.77 11.52 -169.57 -1.95 -9.72 16 5 C 0.28 6.75 7.88 85.13 0.67 7.42 16 6 O -0.48 -11.38 13.09 -87.41 -1.14 -12.52 16 7 C -0.16 -3.23 5.69 -19.75 -0.11 -3.34 16 8 C 0.58 11.86 5.62 86.78 0.49 12.35 16 9 O -0.56 -15.79 17.11 -3.89 -0.07 -15.85 16 10 N -0.70 -10.12 5.50 -465.98 -2.56 -12.68 16 11 C 0.12 1.62 6.06 86.38 0.52 2.14 16 12 C 0.05 0.55 6.07 71.98 0.44 0.99 16 13 O -0.41 -8.00 10.29 -148.98 -1.53 -9.54 16 14 C 0.08 1.65 5.94 71.98 0.43 2.08 16 15 C -0.11 -3.46 5.70 30.59 0.17 -3.29 16 16 C 0.15 5.84 6.26 86.38 0.54 6.38 16 17 N -0.75 -38.33 5.60 -343.47 -1.92 -40.25 16 18 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 21 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16 22 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 C -0.02 -0.26 5.96 -19.36 -0.12 -0.37 16 27 C -0.12 -0.69 8.92 71.24 0.64 -0.06 16 28 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 29 H 0.11 -0.02 6.80 -2.38 -0.02 -0.04 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.43 6.37 9.06 -74.06 -0.67 5.70 16 32 H 0.41 4.76 8.46 -92.71 -0.78 3.98 16 33 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.37 20.41 7.67 -92.71 -0.71 19.70 16 44 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 45 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.12 -0.09 6.83 -2.39 -0.02 -0.11 16 47 H 0.08 0.47 7.24 -2.39 -0.02 0.45 16 Total: -1.00 -83.20 402.35 -2.62 -85.82 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -1.14 Total: 24.02 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 5.94 Total: 8.50 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -6.70 Total: -128.35 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -2.74 Total: -37.91 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -83.20 -2.62 -85.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571353513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.621 kcal (2) G-P(sol) polarization free energy of solvation -83.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds