Wall clock time and date at job start Tue Mar 31 2020 21:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30259 * 125.61740 * 2 1 4 4 C 1.34469 * 108.69931 * 179.73476 * 3 2 1 5 5 C 1.34335 * 107.67270 * 0.39860 * 4 3 2 6 6 C 1.50703 * 126.44560 * 179.87305 * 5 4 3 7 7 C 1.50702 * 109.46525 * 89.71352 * 6 5 4 8 8 O 1.21276 * 120.00417 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99335 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00470 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99754 * 179.97438 * 9 7 6 12 12 C 1.52999 * 109.47519 * 263.60174 * 11 9 7 13 13 H 1.09003 * 109.46740 * 296.70206 * 12 11 9 14 14 C 1.53000 * 109.47100 * 176.70374 * 12 11 9 15 15 N 1.46894 * 109.47082 * 56.69732 * 12 11 9 16 16 C 1.46898 * 111.00108 * 199.09660 * 15 12 11 17 17 C 1.50701 * 109.47319 * 180.02562 * 16 15 12 18 18 O 1.21290 * 119.99820 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00103 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99949 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00303 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00120 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99871 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00070 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47424 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47074 * 120.00266 * 24 22 20 27 27 H 1.48496 * 109.47520 * 239.99940 * 24 22 20 28 28 O 1.33961 * 125.62298 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.46919 * 270.01966 * 1 2 3 30 30 H 1.08998 * 109.47255 * 30.02012 * 1 2 3 31 31 H 1.08996 * 109.46581 * 150.02002 * 1 2 3 32 32 H 1.08003 * 126.16825 * 180.26936 * 4 3 2 33 33 H 1.08999 * 109.46940 * 329.71488 * 6 5 4 34 34 H 1.09001 * 109.46557 * 209.70981 * 6 5 4 35 35 H 1.09005 * 109.46810 * 266.01378 * 10 9 7 36 36 H 1.09003 * 109.47084 * 26.00888 * 10 9 7 37 37 H 1.08996 * 109.47535 * 146.01164 * 10 9 7 38 38 H 1.09001 * 109.47199 * 143.59772 * 11 9 7 39 39 H 1.09003 * 109.47498 * 23.60203 * 11 9 7 40 40 H 1.09003 * 109.47187 * 299.99558 * 14 12 11 41 41 H 1.08997 * 109.47737 * 59.99677 * 14 12 11 42 42 H 1.09001 * 109.46703 * 180.02562 * 14 12 11 43 43 H 1.00896 * 111.00253 * 323.05553 * 15 12 11 44 44 H 1.09000 * 109.47236 * 300.00372 * 16 15 12 45 45 H 1.09006 * 109.47212 * 60.00015 * 16 15 12 46 46 H 0.97006 * 119.99908 * 0.02562 * 19 17 16 47 47 H 0.96996 * 120.00465 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0589 0.0000 4 6 3.5521 0.6676 0.0059 5 6 3.5699 -0.6756 0.0007 6 6 4.7939 -1.5548 0.0016 7 6 5.2008 -1.8476 1.4228 8 8 4.5604 -1.3873 2.3441 9 7 6.2766 -2.6211 1.6699 10 6 7.0505 -3.1766 0.5570 11 6 6.6726 -2.9053 3.0514 12 6 7.7704 -1.9289 3.4785 13 1 8.6546 -2.0833 2.8600 14 6 8.1261 -2.1719 4.9466 15 7 7.2913 -0.5503 3.3123 16 6 8.4143 0.3957 3.2688 17 6 7.8851 1.7964 3.0985 18 8 6.6898 1.9878 3.0216 19 7 8.7398 2.8364 3.0329 20 6 8.2582 4.1107 2.8785 21 1 7.1940 4.2811 2.8091 22 6 9.1394 5.1829 2.8103 23 7 10.4344 4.9754 2.8932 24 14 8.4833 6.9190 2.5993 25 1 7.0002 6.8831 2.5320 26 1 8.9060 7.7517 3.7540 27 1 9.0221 7.5028 1.3447 28 8 2.2873 -1.0889 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3632 -0.8902 -0.5135 32 1 4.4157 1.3163 0.0115 33 1 5.6085 -1.0440 -0.5117 34 1 4.5700 -2.4897 -0.5122 35 1 6.6881 -4.1786 0.3269 36 1 6.9360 -2.5387 -0.3194 37 1 8.1032 -3.2260 0.8354 38 1 7.0480 -3.9264 3.1190 39 1 5.8097 -2.7913 3.7075 40 1 7.2419 -2.0175 5.5650 41 1 8.4816 -3.1949 5.0699 42 1 8.9079 -1.4760 5.2509 43 1 6.7143 -0.4647 2.4891 44 1 8.9795 0.3317 4.1986 45 1 9.0654 0.1484 2.4302 46 1 9.6957 2.6833 3.0948 47 1 11.0496 5.7238 2.8452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571390683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:52 Heat of formation + Delta-G solvation = -38.269371 kcal Electronic energy + Delta-G solvation = -30026.957023 eV Core-core repulsion = 25826.106415 eV Total energy + Delta-G solvation = -4200.850608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.24207 -40.21855 -38.23751 -36.78850 -35.00183 -34.64532 -33.82850 -33.19524 -31.34926 -30.99912 -30.35330 -27.71270 -26.69844 -26.35667 -25.12309 -23.89283 -22.33842 -21.19801 -20.44331 -19.49290 -19.11854 -17.84650 -17.49830 -17.01703 -16.61971 -16.43977 -16.14186 -15.62511 -15.26020 -14.83567 -14.49113 -14.37702 -14.14517 -13.81041 -13.66021 -13.52771 -13.36315 -13.14615 -12.99010 -12.85921 -12.66990 -12.60164 -12.41330 -12.25656 -11.99031 -11.82157 -11.63821 -11.52120 -11.36062 -11.12322 -11.07486 -10.83705 -10.41685 -10.29167 -10.16685 -9.93943 -9.45939 -8.85867 -8.59909 -8.34134 -7.95712 -7.88749 -6.36546 -3.76720 1.44933 2.48229 2.56186 2.77644 2.96845 3.20603 3.30921 3.39622 3.97452 4.07451 4.13844 4.31264 4.41375 4.62382 4.71954 4.81655 4.84047 4.97514 5.04960 5.10559 5.20848 5.23726 5.27840 5.28685 5.30667 5.34444 5.41227 5.44877 5.50494 5.73645 5.77282 5.82808 5.90566 6.01980 6.03625 6.05278 6.20663 6.33630 6.42667 6.48121 7.11802 7.35082 7.61129 7.78070 7.83097 8.07035 8.13150 8.68026 9.24437 9.60606 10.13120 10.81503 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.003718 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.103820 B = 7529.416678 C =10252.986594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.185 3.815 3 N -0.479 5.479 4 C -0.005 4.005 5 C -0.041 4.041 6 C -0.050 4.050 7 C 0.506 3.494 8 O -0.495 6.495 9 N -0.624 5.624 10 C 0.074 3.926 11 C 0.115 3.885 12 C 0.067 3.933 13 H 0.038 0.962 14 C -0.139 4.139 15 N -0.656 5.656 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.927 3.073 25 H -0.267 1.267 26 H -0.282 1.282 27 H -0.282 1.282 28 O -0.201 6.201 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.186 0.814 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.038 0.962 46 H 0.391 0.609 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 -20.777 -7.685 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.022 4.022 3 N -0.209 5.209 4 C -0.144 4.144 5 C -0.094 4.094 6 C -0.090 4.090 7 C 0.292 3.708 8 O -0.367 6.367 9 N -0.360 5.360 10 C -0.070 4.070 11 C -0.008 4.008 12 C -0.044 4.044 13 H 0.056 0.944 14 C -0.198 4.198 15 N -0.292 5.292 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.457 6.457 19 N -0.204 5.204 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.546 5.546 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 O -0.089 6.089 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.203 0.797 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.171 0.829 44 H 0.103 0.897 45 H 0.055 0.945 46 H 0.224 0.776 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.643 -19.594 -6.586 22.405 hybrid contribution 1.440 -0.012 -0.908 1.703 sum -7.203 -19.606 -7.495 22.191 Atomic orbital electron populations 1.20218 0.81486 1.04752 1.04677 1.26244 0.96358 0.78748 1.00800 1.70463 1.02195 1.30146 1.18059 1.23130 0.95206 0.92826 1.03241 1.22324 0.82954 0.94768 1.09329 1.20039 0.92503 1.00347 0.96126 1.20430 0.80534 0.78678 0.91115 1.90860 1.51861 1.48342 1.45643 1.47857 1.29141 1.51624 1.07405 1.21864 0.96672 0.98963 0.89456 1.21718 0.99308 0.97736 0.82029 1.21902 0.95672 0.89715 0.97147 0.94443 1.21752 1.02329 1.00461 0.95245 1.60088 1.19536 1.01748 1.47800 1.21733 0.92919 0.92722 1.00945 1.19848 0.87393 0.85793 0.84441 1.90572 1.15319 1.85090 1.54759 1.41869 1.08562 1.05837 1.64111 1.19763 0.94645 0.81848 1.46261 0.87894 1.25238 0.95004 1.00213 0.97543 1.69621 1.01419 1.32610 1.50950 0.85823 0.79291 0.81712 0.77703 1.19156 1.20774 1.20808 1.84289 1.16463 1.37825 1.70281 0.88970 0.88178 0.89644 0.79685 0.85639 0.87148 0.92243 0.90728 0.90873 0.90128 0.88471 0.91578 0.92755 0.92220 0.82924 0.89674 0.94451 0.77599 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.46 10.51 36.01 0.38 -0.08 16 2 C 0.18 2.63 8.34 -12.94 -0.11 2.52 16 3 N -0.48 -8.26 11.29 -11.10 -0.13 -8.38 16 4 C -0.01 -0.09 11.80 -17.77 -0.21 -0.30 16 5 C -0.04 -0.60 5.88 -35.68 -0.21 -0.81 16 6 C -0.05 -0.53 4.75 -29.03 -0.14 -0.67 16 7 C 0.51 6.91 6.11 -10.98 -0.07 6.85 16 8 O -0.49 -9.38 14.83 5.56 0.08 -9.30 16 9 N -0.62 -6.58 2.52 -181.57 -0.46 -7.04 16 10 C 0.07 0.45 10.33 59.84 0.62 1.07 16 11 C 0.11 1.26 5.21 -4.04 -0.02 1.24 16 12 C 0.07 0.85 2.92 -67.72 -0.20 0.65 16 13 H 0.04 0.43 7.86 -51.93 -0.41 0.03 16 14 C -0.14 -1.62 9.35 37.16 0.35 -1.27 16 15 N -0.66 -11.71 5.91 -107.99 -0.64 -12.35 16 16 C 0.05 0.93 5.97 -4.98 -0.03 0.90 16 17 C 0.44 10.93 7.82 -10.98 -0.09 10.84 16 18 O -0.57 -16.59 15.78 5.55 0.09 -16.50 16 19 N -0.57 -14.84 5.29 -10.96 -0.06 -14.89 16 20 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 21 H 0.10 3.14 7.16 -52.49 -0.38 2.77 16 22 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -25.09 13.05 55.50 0.72 -24.36 16 24 Si 0.93 21.71 29.55 -169.99 -5.02 16.69 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 O -0.20 -2.95 10.77 5.38 0.06 -2.89 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.19 3.09 8.06 -52.48 -0.42 2.67 16 33 H 0.13 1.04 7.41 -51.93 -0.38 0.66 16 34 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.37 6.30 -51.93 -0.33 0.04 16 37 H 0.07 0.41 8.06 -51.93 -0.42 -0.01 16 38 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.10 1.31 7.24 -51.93 -0.38 0.94 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.73 7.11 -51.93 -0.37 0.36 16 43 H 0.35 6.69 5.16 -39.29 -0.20 6.48 16 44 H 0.09 1.49 7.07 -51.93 -0.37 1.12 16 45 H 0.04 0.63 8.07 -51.93 -0.42 0.21 16 46 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 47 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -39.05 395.26 -6.27 -45.31 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -6.91 Total: 14.98 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 0.04 Total: 12.78 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -0.56 Total: -67.03 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: 0.23 Total: -28.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.05 -6.27 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571390683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.043 kcal (2) G-P(sol) polarization free energy of solvation -39.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds