Wall clock time and date at job start Tue Mar 31 2020 21:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30253 * 125.62145 * 2 1 4 4 C 1.34477 * 108.70258 * 179.73545 * 3 2 1 5 5 C 1.34326 * 107.66595 * 0.38789 * 4 3 2 6 6 C 1.50700 * 126.44321 * 179.87461 * 5 4 3 7 7 C 1.50702 * 109.46869 * 89.71455 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 12 12 C 1.53002 * 109.47088 * 89.99979 * 11 9 7 13 13 H 1.09006 * 109.46599 * 65.00373 * 12 11 9 14 14 C 1.52996 * 109.47171 * 184.99994 * 12 11 9 15 15 N 1.46894 * 109.47294 * 305.00279 * 12 11 9 16 16 C 1.46904 * 111.00248 * 154.99395 * 15 12 11 17 17 C 1.50692 * 109.47404 * 180.02562 * 16 15 12 18 18 O 1.21294 * 120.00323 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99928 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00161 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99930 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00536 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00425 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99526 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47107 * 90.00316 * 24 22 20 26 26 H 1.48504 * 109.46754 * 209.99954 * 24 22 20 27 27 H 1.48490 * 109.47432 * 330.00036 * 24 22 20 28 28 O 1.33968 * 125.61866 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46947 * 270.02888 * 1 2 3 30 30 H 1.09001 * 109.47006 * 30.02955 * 1 2 3 31 31 H 1.08994 * 109.47366 * 150.02783 * 1 2 3 32 32 H 1.08004 * 126.16685 * 180.26827 * 4 3 2 33 33 H 1.09004 * 109.47210 * 329.71748 * 6 5 4 34 34 H 1.08994 * 109.47551 * 209.71400 * 6 5 4 35 35 H 1.08998 * 109.46921 * 89.99095 * 10 9 7 36 36 H 1.08994 * 109.46996 * 209.99677 * 10 9 7 37 37 H 1.09001 * 109.46578 * 329.99540 * 10 9 7 38 38 H 1.09001 * 109.47567 * 210.00057 * 11 9 7 39 39 H 1.09005 * 109.47076 * 330.00563 * 11 9 7 40 40 H 1.09004 * 109.47261 * 180.02562 * 14 12 11 41 41 H 1.08996 * 109.47538 * 300.00102 * 14 12 11 42 42 H 1.09006 * 109.47050 * 60.00655 * 14 12 11 43 43 H 1.00905 * 111.00102 * 31.04426 * 15 12 11 44 44 H 1.08998 * 109.47023 * 300.00744 * 16 15 12 45 45 H 1.09002 * 109.46617 * 60.00243 * 16 15 12 46 46 H 0.96993 * 120.00302 * 359.97438 * 19 17 16 47 47 H 0.96999 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6675 0.0059 5 6 3.5698 -0.6757 0.0009 6 6 4.7937 -1.5550 0.0019 7 6 5.2007 -1.8476 1.4231 8 8 4.5598 -1.3879 2.3444 9 7 6.2734 -2.6253 1.6703 10 6 7.0474 -3.1810 0.5575 11 6 6.6655 -2.9147 3.0519 12 6 5.9561 -4.1839 3.5281 13 1 6.3052 -5.0359 2.9447 14 6 6.2670 -4.4173 5.0079 15 7 4.5060 -4.0302 3.3508 16 6 3.8503 -5.3380 3.2173 17 6 2.3674 -5.1404 3.0369 18 8 1.9023 -4.0203 3.0206 19 7 1.5578 -6.2084 2.8936 20 6 0.2084 -6.0287 2.7300 21 1 -0.2057 -5.0313 2.7155 22 6 -0.6262 -7.1296 2.5818 23 7 -1.9194 -6.9573 2.4244 24 14 0.0902 -8.8547 2.6062 25 1 0.1039 -9.3653 4.0006 26 1 -0.7415 -9.7479 1.7601 27 1 1.4773 -8.8222 2.0772 28 8 2.2873 -1.0890 0.0005 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 4.4157 1.3162 0.0115 33 1 5.6084 -1.0443 -0.5115 34 1 4.5699 -2.4899 -0.5117 35 1 7.8419 -2.4864 0.2849 36 1 7.4845 -4.1330 0.8587 37 1 6.3915 -3.3371 -0.2990 38 1 7.7445 -3.0617 3.1002 39 1 6.3836 -2.0789 3.6923 40 1 5.7620 -5.3217 5.3471 41 1 7.3430 -4.5313 5.1395 42 1 5.9179 -3.5652 5.5913 43 1 4.2991 -3.4396 2.5593 44 1 4.2551 -5.8606 2.3506 45 1 4.0320 -5.9288 4.1152 46 1 1.9296 -7.1041 2.9063 47 1 -2.5020 -7.7259 2.3206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571390684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:55 Heat of formation + Delta-G solvation = -63.770848 kcal Electronic energy + Delta-G solvation = -30472.903759 eV Core-core repulsion = 26270.947324 eV Total energy + Delta-G solvation = -4201.956435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.36185 -41.31768 -40.25944 -37.94571 -36.23292 -35.84158 -35.80025 -34.19528 -33.77722 -32.37784 -31.32280 -28.47527 -28.16416 -27.55992 -26.12699 -25.46458 -23.43142 -22.33132 -21.52907 -21.35109 -20.49241 -20.16128 -18.45711 -18.11889 -17.95003 -17.50861 -17.43152 -16.98465 -16.70724 -16.44092 -16.00827 -15.57182 -15.44395 -15.14045 -14.83012 -14.66086 -14.41419 -14.32484 -14.19211 -13.98800 -13.90160 -13.60218 -13.52351 -13.36144 -13.28244 -13.09216 -12.97282 -12.93975 -12.59837 -12.44691 -12.39200 -12.32760 -11.99024 -11.96758 -11.64572 -11.54499 -11.02119 -10.46335 -10.27125 -9.68849 -9.67666 -9.27152 -8.42942 -6.04122 0.36067 1.26920 1.33559 1.42221 1.51481 1.56403 1.70695 1.91796 2.08327 2.21038 2.72154 3.10736 3.12365 3.37989 3.47388 3.68523 3.90266 3.96472 4.08122 4.09430 4.23254 4.24907 4.29634 4.33035 4.45969 4.48219 4.50723 4.52286 4.58337 4.63300 4.74317 4.88688 4.94096 4.95516 4.98801 5.04340 5.07344 5.33919 5.36972 5.51356 5.55786 5.89562 6.12178 6.25908 6.45702 6.58246 6.67684 6.85932 7.11700 7.36396 7.94706 8.75001 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008236 B = 0.004312 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.689497 B = 6492.308901 C = 9110.585069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.178 3.822 3 N -0.509 5.509 4 C -0.036 4.036 5 C -0.047 4.047 6 C -0.048 4.048 7 C 0.496 3.504 8 O -0.559 6.559 9 N -0.617 5.617 10 C 0.063 3.937 11 C 0.114 3.886 12 C 0.064 3.936 13 H 0.067 0.933 14 C -0.135 4.135 15 N -0.690 5.690 16 C 0.061 3.939 17 C 0.442 3.558 18 O -0.611 6.611 19 N -0.589 5.589 20 C -0.329 4.329 21 H 0.050 0.950 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.272 1.272 27 H -0.232 1.232 28 O -0.219 6.219 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.094 0.906 32 H 0.211 0.789 33 H 0.176 0.824 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.343 0.657 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.389 0.611 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.500 3.275 -7.813 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.028 4.028 3 N -0.240 5.240 4 C -0.174 4.174 5 C -0.100 4.100 6 C -0.088 4.088 7 C 0.284 3.716 8 O -0.436 6.436 9 N -0.351 5.351 10 C -0.078 4.078 11 C -0.009 4.009 12 C -0.046 4.046 13 H 0.085 0.915 14 C -0.194 4.194 15 N -0.328 5.328 16 C -0.071 4.071 17 C 0.230 3.770 18 O -0.495 6.495 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.068 0.932 22 C -0.212 4.212 23 N -0.574 5.574 24 Si 0.786 3.214 25 H -0.182 1.182 26 H -0.196 1.196 27 H -0.155 1.155 28 O -0.106 6.106 29 H 0.108 0.892 30 H 0.144 0.856 31 H 0.113 0.887 32 H 0.228 0.772 33 H 0.193 0.807 34 H 0.144 0.856 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.148 0.852 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.166 0.834 44 H 0.090 0.910 45 H 0.129 0.871 46 H 0.225 0.775 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.284 4.825 -6.727 25.657 hybrid contribution -0.310 -1.642 -0.533 1.754 sum 23.975 3.183 -7.260 25.251 Atomic orbital electron populations 1.20454 0.79610 1.06386 1.05199 1.26995 0.97812 0.78307 0.99650 1.70397 1.02975 1.30515 1.20070 1.23444 0.95431 0.93116 1.05448 1.23201 0.83579 0.95719 1.07483 1.20331 0.92067 1.01379 0.94983 1.20960 0.80420 0.78681 0.91496 1.90872 1.53047 1.52152 1.47531 1.47998 1.28863 1.49648 1.08580 1.22255 0.96670 1.00662 0.88203 1.21812 1.00781 0.96669 0.81597 1.22148 0.86121 0.98095 0.98266 0.91510 1.21749 1.02252 1.01420 0.93929 1.60184 1.09966 1.12089 1.50570 1.21692 0.89168 0.93204 1.03065 1.21062 0.90067 0.84438 0.81414 1.90599 1.77907 1.25817 1.55148 1.42005 1.06481 1.07792 1.66876 1.18977 0.82402 0.95062 1.49412 0.93164 1.26119 0.95284 1.03907 0.95911 1.69808 1.04844 1.33437 1.49295 0.85351 0.79951 0.76315 0.79787 1.18181 1.19640 1.15506 1.84451 1.17880 1.38804 1.69491 0.89241 0.85583 0.88713 0.77223 0.80700 0.85588 0.89349 0.89010 0.89873 0.85208 0.91931 0.92908 0.89082 0.93999 0.83408 0.91022 0.87096 0.77522 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.51 71.24 0.75 -0.90 16 2 C 0.18 6.37 8.34 88.34 0.74 7.11 16 3 N -0.51 -17.72 11.29 -303.83 -3.43 -21.16 16 4 C -0.04 -1.08 11.80 83.39 0.98 -0.09 16 5 C -0.05 -1.45 5.88 24.79 0.15 -1.31 16 6 C -0.05 -0.98 4.81 29.10 0.14 -0.84 16 7 C 0.50 13.19 6.04 87.66 0.53 13.72 16 8 O -0.56 -22.27 14.20 -3.04 -0.04 -22.32 16 9 N -0.62 -10.86 2.66 -846.74 -2.25 -13.12 16 10 C 0.06 0.41 10.25 127.77 1.31 1.72 16 11 C 0.11 2.09 5.20 86.38 0.45 2.54 16 12 C 0.06 1.39 2.95 44.92 0.13 1.53 16 13 H 0.07 1.13 7.80 -2.38 -0.02 1.11 16 14 C -0.14 -2.66 9.41 71.98 0.68 -1.98 16 15 N -0.69 -24.05 5.82 -495.59 -2.88 -26.93 16 16 C 0.06 2.12 5.97 85.55 0.51 2.63 16 17 C 0.44 22.02 7.82 87.65 0.69 22.71 16 18 O -0.61 -37.88 15.78 -3.07 -0.05 -37.93 16 19 N -0.59 -29.50 5.09 -306.99 -1.56 -31.06 16 20 C -0.33 -20.14 10.16 84.04 0.85 -19.29 16 21 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 23 N -0.93 -57.35 13.96 21.66 0.30 -57.05 16 24 Si 0.97 39.53 27.74 68.60 1.90 41.43 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 27 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 28 O -0.22 -8.58 10.78 -3.71 -0.04 -8.62 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 32 H 0.21 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.18 1.56 8.11 -2.38 -0.02 1.55 16 34 H 0.13 2.18 7.40 -2.39 -0.02 2.16 16 35 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.09 0.34 8.07 -2.39 -0.02 0.32 16 37 H 0.08 0.42 6.43 -2.39 -0.02 0.40 16 38 H 0.13 1.17 8.07 -2.39 -0.02 1.15 16 39 H 0.06 1.58 7.42 -2.38 -0.02 1.56 16 40 H 0.05 1.09 7.45 -2.39 -0.02 1.07 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.34 13.43 4.17 -89.69 -0.37 13.06 16 44 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 45 H 0.11 3.28 7.44 -2.39 -0.02 3.26 16 46 H 0.39 16.02 5.76 -92.71 -0.53 15.49 16 47 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -100.66 391.46 0.35 -100.31 By element: Atomic # 1 Polarization: 49.17 SS G_CDS: 0.04 Total: 49.21 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: 8.37 Total: 27.23 kcal Atomic # 7 Polarization: -139.48 SS G_CDS: -9.83 Total: -149.31 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -0.13 Total: -68.86 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.43 kcal Total: -100.66 0.35 -100.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571390684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.538 kcal (2) G-P(sol) polarization free energy of solvation -100.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds