Wall clock time and date at job start Tue Mar 31 2020 20:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 126.82830 * 2 1 4 4 N 1.36451 * 108.85654 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.85387 * 179.97438 * 4 3 2 6 6 C 1.34657 * 110.29593 * 0.02562 * 4 3 2 7 7 C 1.50698 * 125.80249 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47285 * 265.00083 * 7 6 4 9 9 N 1.34780 * 120.00188 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00172 * 359.97438 * 8 7 6 11 11 C 1.36772 * 108.40053 * 359.97438 * 6 4 3 12 12 C 1.47252 * 126.94811 * 180.02562 * 11 6 4 13 13 O 1.21625 * 120.00420 * 270.00568 * 12 11 6 14 14 N 1.34786 * 119.99768 * 89.99563 * 12 11 6 15 15 C 1.46492 * 120.00166 * 0.02562 * 14 12 11 16 16 C 1.46502 * 119.99919 * 180.02562 * 14 12 11 17 17 C 1.52992 * 109.47110 * 90.00286 * 16 14 12 18 18 H 1.08999 * 109.47590 * 305.00042 * 17 16 14 19 19 O 1.42902 * 109.46957 * 65.00000 * 17 16 14 20 20 C 1.53005 * 109.47256 * 184.99918 * 17 16 14 21 21 N 1.46498 * 109.46968 * 180.02562 * 20 17 16 22 22 C 1.36939 * 119.99674 * 179.97438 * 21 20 17 23 23 H 1.08004 * 120.00125 * 0.02562 * 22 21 20 24 24 C 1.38814 * 119.99774 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00438 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99797 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47394 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46947 * 120.00105 * 26 24 22 29 29 H 1.48500 * 109.47186 * 240.00058 * 26 24 22 30 30 H 1.08995 * 109.47279 * 89.97756 * 1 2 3 31 31 H 1.09004 * 109.46727 * 209.97397 * 1 2 3 32 32 H 1.09001 * 109.47360 * 329.97526 * 1 2 3 33 33 H 1.08004 * 125.57593 * 359.75562 * 3 2 1 34 34 H 1.09002 * 109.47307 * 25.00149 * 7 6 4 35 35 H 1.09004 * 109.47420 * 145.00079 * 7 6 4 36 36 H 0.97006 * 119.99889 * 359.97438 * 9 8 7 37 37 H 0.96997 * 120.00085 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47794 * 89.99359 * 15 14 12 39 39 H 1.08993 * 109.47242 * 209.99569 * 15 14 12 40 40 H 1.09003 * 109.46904 * 329.99677 * 15 14 12 41 41 H 1.08999 * 109.47175 * 210.00342 * 16 14 12 42 42 H 1.09005 * 109.47035 * 330.00388 * 16 14 12 43 43 H 0.96691 * 113.99976 * 60.00431 * 19 17 16 44 44 H 1.08996 * 109.47183 * 300.00080 * 20 17 16 45 45 H 1.08999 * 109.47047 * 60.00133 * 20 17 16 46 46 H 0.96997 * 120.00229 * 0.02562 * 21 20 17 47 47 H 0.96998 * 120.00483 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6111 0.6554 -0.0006 5 1 4.3840 1.2416 -0.0011 6 6 3.6657 -0.6900 -0.0015 7 6 4.9226 -1.5213 -0.0029 8 6 5.2724 -1.9007 -1.4187 9 7 6.3654 -2.6498 -1.6653 10 8 4.5699 -1.5328 -2.3364 11 6 2.3865 -1.1740 -0.0010 12 6 1.9751 -2.5879 -0.0012 13 8 1.8047 -3.1717 -1.0545 14 7 1.7875 -3.2353 1.1661 15 6 1.9923 -2.5322 2.4348 16 6 1.3787 -4.6421 1.1660 17 6 2.6216 -5.5343 1.1654 18 1 3.2602 -5.2672 0.3235 19 8 3.3409 -5.3497 2.3863 20 6 2.1979 -6.9991 1.0396 21 7 3.3880 -7.8534 1.0397 22 6 3.2552 -9.2125 0.9368 23 1 2.2731 -9.6545 0.8551 24 6 4.3828 -10.0220 0.9374 25 7 5.5796 -9.4835 1.0374 26 14 4.2017 -11.8759 0.7963 27 1 2.7622 -12.2265 0.6965 28 1 4.9119 -12.3516 -0.4181 29 1 4.7872 -12.5233 1.9976 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3634 0.8898 0.5142 33 1 1.9866 2.1060 -0.0037 34 1 5.7398 -0.9452 0.4313 35 1 4.7618 -2.4243 0.5860 36 1 6.9271 -2.9445 -0.9313 37 1 6.5907 -2.8937 -2.5767 38 1 1.0563 -2.0709 2.7500 39 1 2.3216 -3.2413 3.1942 40 1 2.7515 -1.7609 2.3043 41 1 0.7842 -4.8478 2.0561 42 1 0.7836 -4.8475 0.2761 43 1 2.8328 -5.5689 3.1792 44 1 1.5593 -7.2662 1.8815 45 1 1.6491 -7.1399 0.1084 46 1 4.2699 -7.4565 1.1133 47 1 6.3675 -10.0491 1.0382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571590032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:34 Heat of formation + Delta-G solvation = -102.093581 kcal Electronic energy + Delta-G solvation = -30404.186855 eV Core-core repulsion = 26200.568621 eV Total energy + Delta-G solvation = -4203.618233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38047 -40.56500 -40.20433 -38.71155 -36.33240 -35.73759 -34.74455 -33.73102 -33.25284 -32.64700 -30.99697 -29.27080 -27.82679 -27.01999 -26.63165 -24.86535 -23.05395 -22.55294 -21.91641 -20.33399 -19.58406 -19.24163 -18.86261 -18.09626 -17.79107 -17.63599 -17.36380 -16.99568 -16.48395 -16.43174 -16.09323 -15.95017 -15.34896 -15.26404 -14.94811 -14.60163 -14.51654 -14.28180 -14.11613 -13.96695 -13.76899 -13.65093 -13.49996 -13.41076 -13.17857 -13.02991 -12.95833 -12.79958 -12.59870 -12.17316 -12.15791 -12.01104 -11.83225 -11.25806 -11.18846 -10.99879 -10.91188 -10.69592 -9.53330 -9.41904 -9.01750 -9.01316 -7.94909 -5.24440 1.08624 1.46451 1.48020 1.57603 1.57901 1.59325 1.67452 2.07597 2.43913 2.55838 2.72611 3.36199 3.48100 3.54383 3.71529 3.85444 4.00783 4.09826 4.14402 4.19670 4.27397 4.37392 4.39388 4.48891 4.55424 4.57027 4.67554 4.72694 4.82744 4.90053 4.91779 5.02611 5.03390 5.16043 5.22098 5.31840 5.47033 5.57916 5.82923 5.86686 6.05093 6.26090 6.38956 6.43001 6.73868 6.90541 7.24080 7.29113 7.32913 8.07824 8.32436 9.28573 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.002975 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.876829 B = 9410.323999 C =10495.635246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.165 4.165 3 C 0.012 3.988 4 N -0.531 5.531 5 H 0.432 0.568 6 C 0.078 3.922 7 C -0.078 4.078 8 C 0.508 3.492 9 N -0.841 5.841 10 O -0.581 6.581 11 C -0.223 4.223 12 C 0.584 3.416 13 O -0.589 6.589 14 N -0.596 5.596 15 C 0.086 3.914 16 C 0.094 3.906 17 C 0.111 3.889 18 H 0.060 0.940 19 O -0.556 6.556 20 C 0.123 3.877 21 N -0.739 5.739 22 C -0.248 4.248 23 H 0.075 0.925 24 C -0.075 4.075 25 N -0.967 5.967 26 Si 0.975 3.025 27 H -0.266 1.266 28 H -0.295 1.295 29 H -0.289 1.289 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.208 0.792 34 H 0.152 0.848 35 H 0.112 0.888 36 H 0.418 0.582 37 H 0.405 0.595 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.385 0.615 44 H 0.043 0.957 45 H 0.017 0.983 46 H 0.376 0.624 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 27.129 6.374 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.171 4.171 3 C -0.117 4.117 4 N -0.126 5.126 5 H 0.271 0.729 6 C -0.039 4.039 7 C -0.119 4.119 8 C 0.293 3.707 9 N -0.405 5.405 10 O -0.460 6.460 11 C -0.234 4.234 12 C 0.373 3.627 13 O -0.469 6.469 14 N -0.327 5.327 15 C -0.056 4.056 16 C -0.030 4.030 17 C 0.050 3.950 18 H 0.078 0.922 19 O -0.362 6.362 20 C -0.004 4.004 21 N -0.382 5.382 22 C -0.379 4.379 23 H 0.093 0.907 24 C -0.268 4.268 25 N -0.617 5.617 26 Si 0.804 3.196 27 H -0.191 1.191 28 H -0.222 1.222 29 H -0.216 1.216 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.225 0.775 34 H 0.169 0.831 35 H 0.130 0.870 36 H 0.249 0.751 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.234 0.766 44 H 0.061 0.939 45 H 0.035 0.965 46 H 0.208 0.792 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.872 27.289 4.998 28.012 hybrid contribution 0.708 -1.586 -0.321 1.767 sum -3.163 25.703 4.677 26.316 Atomic orbital electron populations 1.20095 0.89102 1.02725 1.01306 1.20668 0.95924 0.90398 1.10140 1.21984 0.81596 0.99947 1.08219 1.41249 1.09090 1.04873 1.57429 0.72879 1.19214 0.93591 0.84453 1.06670 1.20301 0.96087 1.01510 0.93966 1.20933 0.80229 0.77765 0.91788 1.43760 1.28087 1.54815 1.13833 1.90787 1.51162 1.56044 1.48015 1.19937 0.94144 0.91653 1.17636 1.18119 0.75523 0.86223 0.82868 1.90788 1.53046 1.69669 1.33436 1.47779 1.67194 1.10825 1.06928 1.21921 1.02248 0.97726 0.83716 1.22064 0.95972 0.80259 1.04727 1.22070 0.93245 0.92483 0.87213 0.92209 1.86552 1.44386 1.89778 1.15530 1.21418 0.90041 0.90323 0.98656 1.42412 1.04277 1.02843 1.88620 1.19687 0.93031 0.84207 1.41015 0.90681 1.25597 0.95027 1.02597 1.03559 1.69841 0.97462 1.35383 1.59060 0.85053 0.77713 0.80108 0.76741 1.19072 1.22213 1.21602 0.93082 0.93402 0.88795 0.77490 0.83051 0.86979 0.75101 0.76445 0.91348 0.89261 0.90785 0.86290 0.90967 0.76627 0.93929 0.96490 0.79226 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.35 71.24 0.74 -0.68 16 2 C -0.16 -3.64 6.36 -18.51 -0.12 -3.76 16 3 C 0.01 0.18 11.82 83.12 0.98 1.16 16 4 N -0.53 -7.83 5.90 -182.72 -1.08 -8.91 16 5 H 0.43 3.13 8.96 -92.71 -0.83 2.30 16 6 C 0.08 1.72 5.33 41.78 0.22 1.95 16 7 C -0.08 -1.50 6.01 29.10 0.17 -1.33 16 8 C 0.51 13.53 8.09 87.65 0.71 14.24 16 9 N -0.84 -16.71 8.87 -173.53 -1.54 -18.25 16 10 O -0.58 -21.89 16.87 -3.04 -0.05 -21.94 16 11 C -0.22 -6.17 4.29 -19.04 -0.08 -6.25 16 12 C 0.58 19.69 7.16 86.61 0.62 20.31 16 13 O -0.59 -26.52 16.69 -4.11 -0.07 -26.59 16 14 N -0.60 -15.81 2.84 -850.88 -2.41 -18.22 16 15 C 0.09 1.51 10.08 127.77 1.29 2.80 16 16 C 0.09 2.60 5.06 86.38 0.44 3.04 16 17 C 0.11 3.81 3.30 30.59 0.10 3.91 16 18 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 19 O -0.56 -17.21 11.91 -148.98 -1.77 -18.98 16 20 C 0.12 5.06 5.92 86.38 0.51 5.57 16 21 N -0.74 -39.12 5.49 -343.45 -1.89 -41.00 16 22 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 23 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 24 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 25 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 26 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 29 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 2.36 8.05 -2.39 -0.02 2.34 16 36 H 0.42 5.62 8.83 -92.70 -0.82 4.80 16 37 H 0.40 7.97 8.93 -92.71 -0.83 7.14 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.34 7.11 -2.39 -0.02 1.32 16 40 H 0.07 1.27 6.62 -2.39 -0.02 1.25 16 41 H 0.12 2.37 8.07 -2.39 -0.02 2.35 16 42 H 0.07 2.34 7.42 -2.38 -0.02 2.32 16 43 H 0.38 8.88 9.04 -74.06 -0.67 8.21 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 46 H 0.38 21.49 7.54 -92.71 -0.70 20.79 16 47 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -94.11 401.67 -2.40 -96.51 By element: Atomic # 1 Polarization: 47.63 SS G_CDS: -2.79 Total: 44.84 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 6.89 Total: 23.57 kcal Atomic # 7 Polarization: -139.78 SS G_CDS: -6.64 Total: -146.42 kcal Atomic # 8 Polarization: -65.61 SS G_CDS: -1.89 Total: -67.51 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -94.11 -2.40 -96.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571590032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.581 kcal (2) G-P(sol) polarization free energy of solvation -94.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds