Wall clock time and date at job start Tue Mar 31 2020 20:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 126.83643 * 2 1 4 4 N 1.36441 * 108.85698 * 180.25082 * 3 2 1 5 5 H 0.97002 * 124.85132 * 179.77309 * 4 3 2 6 6 C 1.34657 * 110.30248 * 359.75343 * 4 3 2 7 7 C 1.50695 * 125.80145 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47063 * 260.64177 * 7 6 4 9 9 N 1.34773 * 120.00283 * 185.21514 * 8 7 6 10 10 O 1.21281 * 119.99919 * 5.21907 * 8 7 6 11 11 C 1.36773 * 108.39246 * 359.97438 * 6 4 3 12 12 C 1.47260 * 126.93880 * 179.97438 * 11 6 4 13 13 O 1.21631 * 119.99836 * 274.77293 * 12 11 6 14 14 N 1.34772 * 120.00456 * 94.77282 * 12 11 6 15 15 C 1.46497 * 119.99879 * 355.27579 * 14 12 11 16 16 C 1.46499 * 120.00124 * 175.27484 * 14 12 11 17 17 C 1.53001 * 109.47279 * 90.00303 * 16 14 12 18 18 H 1.08997 * 109.47103 * 59.99807 * 17 16 14 19 19 O 1.42903 * 109.46701 * 299.99915 * 17 16 14 20 20 C 1.52998 * 109.47195 * 180.02562 * 17 16 14 21 21 N 1.46500 * 109.46824 * 184.99924 * 20 17 16 22 22 C 1.36939 * 119.99710 * 179.72346 * 21 20 17 23 23 H 1.08001 * 120.00324 * 0.27430 * 22 21 20 24 24 C 1.38816 * 120.00109 * 180.27145 * 22 21 20 25 25 N 1.31622 * 119.99759 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00068 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47083 * 60.00343 * 26 24 22 28 28 H 1.48507 * 109.47112 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47537 * 300.00300 * 26 24 22 30 30 H 1.08998 * 109.47239 * 270.14435 * 1 2 3 31 31 H 1.08996 * 109.47341 * 30.15095 * 1 2 3 32 32 H 1.09008 * 109.46648 * 150.14534 * 1 2 3 33 33 H 1.08007 * 125.56883 * 0.04454 * 3 2 1 34 34 H 1.08995 * 109.47339 * 20.64523 * 7 6 4 35 35 H 1.09003 * 109.46773 * 140.64685 * 7 6 4 36 36 H 0.97000 * 119.99970 * 0.02562 * 9 8 7 37 37 H 0.96996 * 120.00406 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47326 * 275.29449 * 15 14 12 39 39 H 1.09002 * 109.47517 * 35.29572 * 15 14 12 40 40 H 1.08999 * 109.47193 * 155.29278 * 15 14 12 41 41 H 1.09004 * 109.47480 * 329.99855 * 16 14 12 42 42 H 1.09007 * 109.46938 * 210.00145 * 16 14 12 43 43 H 0.96704 * 113.99890 * 299.99742 * 19 17 16 44 44 H 1.09000 * 109.47333 * 64.99585 * 20 17 16 45 45 H 1.09001 * 109.46875 * 304.99246 * 20 17 16 46 46 H 0.96998 * 120.00543 * 359.97438 * 21 20 17 47 47 H 0.96998 * 120.00026 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6110 0.6552 -0.0057 5 1 4.3840 1.2413 -0.0100 6 6 3.6656 -0.6903 -0.0039 7 6 4.9226 -1.5215 -0.0093 8 6 5.2067 -1.9934 -1.4121 9 7 6.2269 -2.8431 -1.6436 10 8 4.5173 -1.6085 -2.3327 11 6 2.3864 -1.1741 0.0035 12 6 1.9750 -2.5880 0.0073 13 8 1.8835 -3.1976 -1.0413 14 7 1.6998 -3.2068 1.1725 15 6 1.9090 -2.5054 2.4415 16 6 1.1913 -4.5807 1.1701 17 6 2.3662 -5.5594 1.2229 18 1 2.9423 -5.3868 2.1320 19 8 3.2041 -5.3596 0.0827 20 6 1.8352 -6.9943 1.2198 21 7 2.9510 -7.9282 1.3905 22 6 2.7159 -9.2768 1.4245 23 1 1.7085 -9.6522 1.3210 24 6 3.7724 -10.1616 1.5918 25 7 5.0001 -9.7041 1.7183 26 14 3.4517 -12.0011 1.6389 27 1 2.8258 -12.4274 0.3614 28 1 4.7359 -12.7229 1.8266 29 1 2.5383 -12.3157 2.7667 30 1 -0.3633 0.0026 1.0276 31 1 -0.3634 0.8886 -0.5161 32 1 -0.3633 -0.8914 -0.5116 33 1 1.9868 2.1059 0.0007 34 1 5.7580 -0.9194 0.3477 35 1 4.7907 -2.3838 0.6443 36 1 6.7781 -3.1512 -0.9073 37 1 6.4100 -3.1465 -2.5465 38 1 2.9501 -2.6099 2.7471 39 1 1.6714 -1.4490 2.3164 40 1 1.2613 -2.9354 3.2055 41 1 0.6151 -4.7534 0.2611 42 1 0.5521 -4.7331 2.0399 43 1 2.7563 -5.4967 -0.7633 44 1 1.3353 -7.1947 0.2721 45 1 1.1267 -7.1213 2.0383 46 1 3.8558 -7.5912 1.4830 47 1 5.7383 -10.3222 1.8357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571590033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:38 Heat of formation + Delta-G solvation = -99.214599 kcal Electronic energy + Delta-G solvation = -30545.107322 eV Core-core repulsion = 26341.613931 eV Total energy + Delta-G solvation = -4203.493391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32709 -40.48720 -40.12669 -38.48756 -36.27044 -35.79373 -34.66006 -33.70639 -33.20102 -32.58134 -30.89407 -29.21147 -27.89185 -26.98242 -26.59858 -24.80962 -23.05611 -22.40740 -21.81584 -20.31074 -19.54411 -19.21730 -18.81654 -18.03463 -17.80760 -17.58170 -17.30097 -16.83231 -16.54859 -16.26175 -15.99646 -15.90894 -15.28800 -15.17257 -14.94220 -14.58289 -14.46395 -14.20413 -14.00059 -13.98658 -13.72572 -13.67399 -13.51147 -13.34858 -13.15755 -12.98755 -12.93998 -12.74162 -12.57106 -12.20360 -12.14901 -12.01586 -11.80722 -11.12066 -11.10503 -10.95702 -10.80653 -10.60844 -9.49357 -9.36888 -9.00209 -8.99168 -7.94111 -5.23455 1.13299 1.46548 1.50285 1.56202 1.67393 1.68535 1.73546 2.13735 2.47430 2.56899 2.80474 3.36982 3.52223 3.59517 3.78159 3.91534 4.05959 4.14338 4.18384 4.26988 4.29611 4.39379 4.42727 4.51885 4.56241 4.58297 4.69201 4.72329 4.79499 4.92492 4.93131 4.98774 5.07525 5.18158 5.26832 5.33926 5.46985 5.61596 5.89750 5.90177 6.08547 6.26824 6.46146 6.50710 6.76324 6.78746 7.33482 7.35736 7.37459 8.09301 8.33456 9.29032 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.002923 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.669540 B = 9576.814314 C =10679.870071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.167 4.167 3 C 0.010 3.990 4 N -0.533 5.533 5 H 0.431 0.569 6 C 0.078 3.922 7 C -0.076 4.076 8 C 0.513 3.487 9 N -0.840 5.840 10 O -0.580 6.580 11 C -0.222 4.222 12 C 0.593 3.407 13 O -0.575 6.575 14 N -0.601 5.601 15 C 0.080 3.920 16 C 0.094 3.906 17 C 0.100 3.900 18 H 0.094 0.906 19 O -0.561 6.561 20 C 0.124 3.876 21 N -0.738 5.738 22 C -0.250 4.250 23 H 0.075 0.925 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.976 3.024 27 H -0.281 1.281 28 H -0.294 1.294 29 H -0.275 1.275 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.206 0.794 34 H 0.147 0.853 35 H 0.113 0.887 36 H 0.416 0.584 37 H 0.403 0.597 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.372 0.628 44 H 0.016 0.984 45 H 0.041 0.959 46 H 0.375 0.625 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 27.850 3.124 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.173 4.173 3 C -0.120 4.120 4 N -0.129 5.129 5 H 0.270 0.730 6 C -0.039 4.039 7 C -0.117 4.117 8 C 0.298 3.702 9 N -0.404 5.404 10 O -0.459 6.459 11 C -0.233 4.233 12 C 0.382 3.618 13 O -0.454 6.454 14 N -0.333 5.333 15 C -0.062 4.062 16 C -0.030 4.030 17 C 0.039 3.961 18 H 0.112 0.888 19 O -0.366 6.366 20 C -0.003 4.003 21 N -0.381 5.381 22 C -0.382 4.382 23 H 0.093 0.907 24 C -0.268 4.268 25 N -0.618 5.618 26 Si 0.804 3.196 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.200 1.200 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.223 0.777 34 H 0.165 0.835 35 H 0.131 0.869 36 H 0.246 0.754 37 H 0.234 0.766 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.219 0.781 44 H 0.034 0.966 45 H 0.058 0.942 46 H 0.207 0.793 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.618 27.972 2.609 28.215 hybrid contribution 0.611 -1.613 -0.687 1.857 sum -2.007 26.359 1.922 26.505 Atomic orbital electron populations 1.20092 0.89103 1.01726 1.02276 1.20671 0.95891 0.90484 1.10296 1.21962 0.81673 0.99926 1.08418 1.41262 1.09043 1.04954 1.57596 0.72978 1.19249 0.93777 0.84335 1.06501 1.20257 0.96094 1.00967 0.94361 1.20815 0.79464 0.78479 0.91441 1.43714 1.33642 1.48681 1.14353 1.90772 1.49130 1.58739 1.47294 1.19983 0.93972 0.91902 1.17417 1.17880 0.75241 0.85963 0.82758 1.90736 1.53383 1.67828 1.33441 1.47721 1.65032 1.13514 1.06991 1.21935 1.02168 0.98098 0.83977 1.22102 0.95608 0.80886 1.04404 1.22380 0.92175 0.92057 0.89458 0.88802 1.86459 1.41152 1.92693 1.16285 1.21434 0.90962 0.89714 0.98234 1.42414 1.05580 1.02229 1.87899 1.19623 0.93543 0.84199 1.40801 0.90727 1.25598 0.95175 1.02531 1.03458 1.69832 0.98937 1.34797 1.58239 0.85189 0.76396 0.79886 0.78131 1.20700 1.21986 1.20048 0.90398 0.90071 0.94845 0.77681 0.83527 0.86921 0.75351 0.76606 0.92528 0.90081 0.88968 0.91197 0.86604 0.78098 0.96614 0.94156 0.79291 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.35 71.24 0.74 -0.62 16 2 C -0.17 -3.57 6.05 -18.52 -0.11 -3.68 16 3 C 0.01 0.14 11.82 83.12 0.98 1.12 16 4 N -0.53 -7.75 5.90 -182.73 -1.08 -8.83 16 5 H 0.43 3.08 8.96 -92.71 -0.83 2.25 16 6 C 0.08 1.71 5.67 41.78 0.24 1.94 16 7 C -0.08 -1.45 5.99 29.10 0.17 -1.27 16 8 C 0.51 13.57 8.09 87.66 0.71 14.28 16 9 N -0.84 -16.96 8.87 -173.54 -1.54 -18.50 16 10 O -0.58 -21.51 16.88 -3.03 -0.05 -21.56 16 11 C -0.22 -5.95 4.32 -19.04 -0.08 -6.03 16 12 C 0.59 19.02 6.80 86.62 0.59 19.61 16 13 O -0.57 -23.94 15.21 8.78 0.13 -23.81 16 14 N -0.60 -15.57 2.83 -850.85 -2.41 -17.98 16 15 C 0.08 1.41 10.26 127.77 1.31 2.73 16 16 C 0.09 2.57 5.18 86.38 0.45 3.01 16 17 C 0.10 3.40 3.27 30.59 0.10 3.50 16 18 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 19 O -0.56 -22.06 11.99 -136.07 -1.63 -23.69 16 20 C 0.12 5.06 5.90 86.38 0.51 5.57 16 21 N -0.74 -38.99 5.55 -343.45 -1.91 -40.90 16 22 C -0.25 -14.38 9.99 84.03 0.84 -13.54 16 23 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 24 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 25 N -0.97 -60.42 13.06 21.65 0.28 -60.13 16 26 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 27 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.21 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.42 5.88 8.83 -92.71 -0.82 5.07 16 37 H 0.40 8.10 8.93 -92.71 -0.83 7.27 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.31 6.75 -2.39 -0.02 1.29 16 40 H 0.09 1.22 7.83 -2.39 -0.02 1.20 16 41 H 0.07 2.15 7.49 -2.39 -0.02 2.13 16 42 H 0.12 2.41 7.86 -2.38 -0.02 2.39 16 43 H 0.37 15.03 8.31 -74.05 -0.62 14.42 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.38 21.38 7.67 -92.71 -0.71 20.67 16 47 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -90.23 400.46 -2.01 -92.24 By element: Atomic # 1 Polarization: 54.29 SS G_CDS: -2.75 Total: 51.54 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 6.91 Total: 22.66 kcal Atomic # 7 Polarization: -139.69 SS G_CDS: -6.65 Total: -146.33 kcal Atomic # 8 Polarization: -67.51 SS G_CDS: -1.55 Total: -69.06 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -90.23 -2.01 -92.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571590033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.977 kcal (2) G-P(sol) polarization free energy of solvation -90.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds