Wall clock time and date at job start Tue Mar 31 2020 21:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99826 * 2 1 4 4 C 1.53001 * 109.46959 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47012 * 64.99647 * 4 3 2 6 6 C 1.46496 * 120.00379 * 274.61934 * 5 4 3 7 7 C 1.50704 * 109.47431 * 263.89202 * 6 5 4 8 8 H 1.07998 * 119.99882 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99851 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00554 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99843 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46790 * 60.00111 * 11 9 7 13 13 H 1.48500 * 109.47205 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47247 * 300.00245 * 11 9 7 15 15 C 1.34779 * 119.99693 * 94.62531 * 5 4 3 16 16 O 1.21589 * 120.00082 * 354.50927 * 15 5 4 17 17 C 1.47521 * 120.00100 * 174.78724 * 15 5 4 18 18 C 1.36598 * 125.77341 * 184.31216 * 17 15 5 19 19 N 1.34814 * 106.83909 * 180.02562 * 18 17 15 20 20 C 1.46498 * 126.59329 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47377 * 124.99815 * 20 19 18 22 22 C 1.53008 * 112.99851 * 48.17485 * 21 20 19 23 23 C 1.54037 * 113.81788 * 276.18980 * 21 20 19 24 24 O 1.44174 * 85.51670 * 223.19393 * 23 21 20 25 25 C 1.44168 * 93.34300 * 24.19141 * 24 23 21 26 26 N 1.40211 * 106.81133 * 359.97438 * 19 18 17 27 27 N 1.28755 * 108.36864 * 359.72983 * 26 19 18 28 28 H 1.08993 * 109.47481 * 300.00055 * 1 2 3 29 29 H 1.08997 * 109.46990 * 60.00643 * 1 2 3 30 30 H 1.09007 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47137 * 59.99831 * 3 2 1 32 32 H 1.08997 * 109.46878 * 299.99308 * 3 2 1 33 33 H 1.08998 * 109.46893 * 304.99931 * 4 3 2 34 34 H 1.08991 * 109.47075 * 184.99855 * 4 3 2 35 35 H 1.09010 * 109.46894 * 23.89084 * 6 5 4 36 36 H 1.09003 * 109.47312 * 143.88812 * 6 5 4 37 37 H 0.96993 * 120.00160 * 179.97438 * 10 9 7 38 38 H 1.08000 * 126.57504 * 359.97438 * 18 17 15 39 39 H 1.09000 * 109.47263 * 245.00276 * 20 19 18 40 40 H 1.09007 * 109.46898 * 4.99973 * 20 19 18 41 41 H 1.08991 * 109.46996 * 59.99757 * 22 21 20 42 42 H 1.09000 * 109.47197 * 180.02562 * 22 21 20 43 43 H 1.09007 * 109.46864 * 299.99907 * 22 21 20 44 44 H 1.09001 * 113.86140 * 337.34422 * 23 21 20 45 45 H 1.09002 * 113.86549 * 109.04147 * 23 21 20 46 46 H 1.09003 * 113.86517 * 221.66289 * 25 24 23 47 47 H 1.08999 * 113.98544 * 89.96694 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0094 -0.8956 -1.3729 7 6 5.4021 -1.3929 -1.0826 8 1 6.1846 -0.6919 -0.8326 9 6 5.6771 -2.7429 -1.1362 10 7 4.7243 -3.5966 -1.4410 11 14 7.4036 -3.3592 -0.7770 12 1 7.7918 -2.9684 0.6021 13 1 7.4367 -4.8387 -0.9006 14 1 8.3549 -2.7605 -1.7475 15 6 4.3525 1.3356 -2.2899 16 8 4.2314 2.5437 -2.2251 17 6 4.9052 0.7141 -3.5084 18 6 5.3979 1.3829 -4.5928 19 7 5.7987 0.4489 -5.4785 20 6 6.3953 0.6921 -6.7942 21 6 7.7354 -0.0399 -6.8898 22 6 7.6542 -1.4976 -6.4320 23 6 8.9156 0.7411 -6.2817 24 8 9.6472 0.3247 -7.4521 25 6 8.4526 0.1490 -8.2399 26 7 5.5347 -0.7999 -4.8984 27 7 5.0145 -0.6059 -3.7367 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1765 0.0902 35 1 3.3108 -1.3355 -0.6611 36 1 3.7250 -1.1821 -2.3854 37 1 4.9180 -4.5462 -1.4791 38 1 5.4547 2.4542 -4.7170 39 1 5.7245 0.3249 -7.5709 40 1 6.5554 1.7620 -6.9284 41 1 6.9385 -2.0346 -7.0544 42 1 8.6360 -1.9623 -6.5231 43 1 7.3304 -1.5343 -5.3918 44 1 8.7498 1.8169 -6.2247 45 1 9.2929 0.3163 -5.3514 46 1 8.4626 -0.7454 -8.8628 47 1 8.1438 1.0428 -8.7819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649751587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:26 Heat of formation + Delta-G solvation = 7.796827 kcal Electronic energy + Delta-G solvation = -30810.925695 eV Core-core repulsion = 26612.072667 eV Total energy + Delta-G solvation = -4198.853028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.03566 -41.63579 -40.42134 -38.63418 -36.62266 -35.91656 -34.42191 -32.95722 -32.04418 -30.70335 -28.75132 -28.53325 -27.58206 -27.17171 -26.55883 -25.08331 -24.48432 -23.13532 -22.71161 -20.67280 -19.76531 -18.66112 -18.25811 -17.63352 -17.51582 -17.34328 -16.97788 -16.80554 -16.63403 -16.54316 -16.22149 -16.12580 -15.87160 -15.33383 -15.13722 -14.63540 -14.51067 -14.16291 -14.10508 -13.61563 -13.52099 -13.32496 -13.12947 -13.04235 -12.81240 -12.74796 -12.73407 -12.67103 -12.53153 -12.06403 -12.01459 -11.90729 -11.62393 -11.60099 -11.26877 -10.95668 -10.90379 -10.61346 -10.54054 -10.31782 -10.02531 -9.32480 -8.00441 -6.06748 0.38139 1.00608 1.33944 1.37864 1.39315 1.45390 2.31103 2.49603 2.52862 2.64670 3.00236 3.06629 3.32990 3.35436 3.55490 3.76096 3.85400 4.00506 4.14638 4.19227 4.20189 4.30265 4.33272 4.40820 4.42132 4.55110 4.57542 4.58879 4.62147 4.67424 4.77668 4.82877 4.86681 4.87496 4.95263 4.98839 5.06327 5.15972 5.21696 5.38640 5.58212 5.71952 5.92242 5.99355 6.30720 6.34572 6.63770 6.97998 7.23077 7.46475 7.58249 9.07013 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.004102 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.154103 B = 6824.734565 C = 8457.265778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.055 3.945 4 C 0.114 3.886 5 N -0.583 5.583 6 C 0.262 3.738 7 C -0.506 4.506 8 H 0.036 0.964 9 C 0.033 3.967 10 N -0.915 5.915 11 Si 0.935 3.065 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.285 1.285 15 C 0.594 3.406 16 O -0.586 6.586 17 C -0.130 4.130 18 C 0.101 3.899 19 N -0.355 5.355 20 C 0.122 3.878 21 C -0.140 4.140 22 C -0.133 4.133 23 C 0.039 3.961 24 O -0.404 6.404 25 C 0.061 3.939 26 N -0.103 5.103 27 N -0.180 5.180 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.020 0.980 36 H 0.043 0.957 37 H 0.259 0.741 38 H 0.238 0.762 39 H 0.121 0.879 40 H 0.151 0.849 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.112 0.888 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 12.838 -11.658 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.022 4.022 4 C -0.009 4.009 5 N -0.311 5.311 6 C 0.141 3.859 7 C -0.545 4.545 8 H 0.054 0.946 9 C -0.167 4.167 10 N -0.555 5.555 11 Si 0.762 3.238 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.211 1.211 15 C 0.382 3.618 16 O -0.469 6.469 17 C -0.270 4.270 18 C -0.057 4.057 19 N -0.139 5.139 20 C 0.003 3.997 21 C -0.141 4.141 22 C -0.191 4.191 23 C -0.038 4.038 24 O -0.323 6.323 25 C -0.015 4.015 26 N -0.083 5.083 27 N -0.052 5.052 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.038 0.962 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.255 0.745 39 H 0.139 0.861 40 H 0.168 0.832 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.130 0.870 45 H 0.084 0.916 46 H 0.121 0.879 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.262 11.500 -11.908 16.556 hybrid contribution 0.590 0.153 0.639 0.883 sum 0.852 11.652 -11.269 16.232 Atomic orbital electron populations 1.22852 0.80113 1.03164 1.00632 1.88040 1.21099 1.28456 1.95477 1.22948 0.93439 0.84718 1.01077 1.21605 0.93209 0.99625 0.86412 1.48068 1.61420 1.09171 1.12398 1.19250 0.95502 0.73220 0.97946 1.21299 0.95639 0.91685 1.45901 0.94589 1.25305 0.99075 0.96921 0.95364 1.70015 1.33453 1.02316 1.49716 0.85990 0.82072 0.77263 0.78454 1.19657 1.20840 1.21125 1.17107 0.77095 0.85316 0.82331 1.90637 1.59662 1.13705 1.82930 1.21596 1.15468 0.90242 0.99657 1.23665 0.95450 0.98485 0.88088 1.50783 1.41904 1.05358 1.15832 1.22598 0.93669 1.04343 0.79093 1.23984 0.94270 0.97114 0.98719 1.21691 1.01408 0.93649 1.02303 1.24242 0.89281 1.00210 0.90019 1.89686 1.28952 1.88107 1.25556 1.24249 0.81026 1.04023 0.92242 1.82018 1.19716 1.02513 1.04033 1.75410 1.07652 1.15567 1.06558 0.92161 0.94013 0.89675 0.89647 0.93905 0.90357 0.87960 0.96181 0.93938 0.93195 0.74536 0.86091 0.83167 0.91152 0.92913 0.92915 0.86973 0.91552 0.87928 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.41 -15.31 9.21 -148.98 -1.37 -16.68 16 3 C 0.06 1.80 6.28 71.98 0.45 2.26 16 4 C 0.11 4.29 5.84 86.38 0.50 4.80 16 5 N -0.58 -26.44 2.46 -829.93 -2.04 -28.48 16 6 C 0.26 13.97 4.51 85.64 0.39 14.36 16 7 C -0.51 -28.75 7.91 25.60 0.20 -28.55 16 8 H 0.04 2.09 7.81 -2.91 -0.02 2.06 16 9 C 0.03 1.89 5.46 84.65 0.46 2.36 16 10 N -0.91 -55.33 13.29 21.45 0.28 -55.04 16 11 Si 0.94 46.32 29.54 68.60 2.03 48.35 16 12 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 13 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 14 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 15 C 0.59 25.78 7.61 86.69 0.66 26.44 16 16 O -0.59 -24.69 16.43 -4.00 -0.07 -24.76 16 17 C -0.13 -5.31 6.61 40.82 0.27 -5.04 16 18 C 0.10 2.88 11.27 83.85 0.95 3.83 16 19 N -0.35 -9.56 3.65 -347.10 -1.27 -10.83 16 20 C 0.12 1.78 6.10 86.38 0.53 2.31 16 21 C -0.14 -2.54 1.23 -51.48 -0.06 -2.60 16 22 C -0.13 -3.54 8.22 71.98 0.59 -2.94 16 23 C 0.04 0.77 8.36 72.27 0.60 1.37 16 24 O -0.40 -8.74 12.37 -148.98 -1.84 -10.58 16 25 C 0.06 0.80 8.36 72.27 0.60 1.40 16 26 N -0.10 -4.07 10.44 37.02 0.39 -3.68 16 27 N -0.18 -8.38 7.87 -49.99 -0.39 -8.77 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 3.02 8.11 -2.39 -0.02 3.00 16 34 H 0.10 3.49 7.36 -2.39 -0.02 3.48 16 35 H 0.02 1.17 6.84 -2.38 -0.02 1.15 16 36 H 0.04 2.48 5.65 -2.39 -0.01 2.46 16 37 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.24 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.15 0.83 7.87 -2.38 -0.02 0.81 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 1.42 8.09 -2.39 -0.02 1.40 16 43 H 0.05 1.87 5.60 -2.38 -0.01 1.86 16 44 H 0.11 1.51 7.96 -2.39 -0.02 1.49 16 45 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 46 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 47 H 0.12 0.69 8.10 -2.39 -0.02 0.67 16 Total: -1.00 -80.40 388.29 4.09 -76.32 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.97 Total: 12.15 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 7.40 Total: 22.01 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -3.03 Total: -106.81 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -3.28 Total: -52.02 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -80.40 4.09 -76.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649751587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.112 kcal (2) G-P(sol) polarization free energy of solvation -80.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds