Wall clock time and date at job start Tue Mar 31 2020 21:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35318 * 128.03976 * 2 1 4 4 O 1.34013 * 106.67050 * 180.25962 * 3 2 1 5 5 N 1.20905 * 111.83953 * 359.72964 * 4 3 2 6 6 C 1.30979 * 111.44647 * 359.97438 * 5 4 3 7 7 C 1.48329 * 126.94034 * 179.97438 * 6 5 4 8 8 O 1.21503 * 120.00051 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99999 * 359.75033 * 7 6 5 10 10 C 1.46504 * 119.99858 * 180.27206 * 9 7 6 11 11 C 1.53004 * 109.46932 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46561 * 65.00421 * 11 10 9 13 13 N 1.46897 * 109.47090 * 305.00332 * 11 10 9 14 14 C 1.46900 * 110.99554 * 154.99992 * 13 11 10 15 15 C 1.50700 * 109.47050 * 179.97438 * 14 13 11 16 16 O 1.21298 * 119.99682 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00362 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00384 * 180.02562 * 17 15 14 19 19 H 1.08006 * 119.99658 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00420 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99551 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47075 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47312 * 119.99658 * 22 20 18 25 25 H 1.48502 * 109.46860 * 239.99812 * 22 20 18 26 26 C 1.53002 * 109.47059 * 185.00121 * 11 10 9 27 27 C 1.53004 * 109.47142 * 300.00162 * 26 11 10 28 28 C 1.53001 * 109.47119 * 60.00065 * 26 11 10 29 29 H 1.08998 * 109.47310 * 270.17413 * 1 2 3 30 30 H 1.08999 * 109.47501 * 30.17119 * 1 2 3 31 31 H 1.08997 * 109.47625 * 150.17268 * 1 2 3 32 32 H 1.08001 * 126.66415 * 359.97438 * 3 2 1 33 33 H 0.96991 * 119.99719 * 0.28109 * 9 7 6 34 34 H 1.08998 * 109.47306 * 300.00567 * 10 9 7 35 35 H 1.08997 * 109.46860 * 60.00391 * 10 9 7 36 36 H 1.00894 * 110.99879 * 278.95144 * 13 11 10 37 37 H 1.09001 * 109.47243 * 299.99520 * 14 13 11 38 38 H 1.08994 * 109.47412 * 60.00217 * 14 13 11 39 39 H 0.96996 * 120.00120 * 359.97438 * 17 15 14 40 40 H 0.97007 * 119.99542 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.46896 * 180.02562 * 26 11 10 42 42 H 1.09002 * 109.47058 * 300.00270 * 27 26 11 43 43 H 1.09001 * 109.46760 * 60.00063 * 27 26 11 44 44 H 1.08994 * 109.47049 * 179.97438 * 27 26 11 45 45 H 1.09000 * 109.47071 * 59.99867 * 28 26 11 46 46 H 1.08988 * 109.46889 * 179.97438 * 28 26 11 47 47 H 1.09001 * 109.46957 * 300.00106 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5774 -0.0058 5 7 3.5988 -0.6316 -0.0039 6 6 2.3837 -1.1205 0.0038 7 6 1.9992 -2.5531 0.0078 8 8 0.8255 -2.8671 0.0146 9 7 2.9518 -3.5065 -0.0018 10 6 2.5720 -4.9214 -0.0039 11 6 3.8329 -5.7879 -0.0146 12 1 4.3841 -5.6387 0.9138 13 7 4.6792 -5.4068 -1.1532 14 6 6.0868 -5.7407 -0.8978 15 6 6.9223 -5.3367 -2.0851 16 8 6.3969 -4.8209 -3.0491 17 7 8.2533 -5.5485 -2.0760 18 6 9.0135 -5.1805 -3.1559 19 1 8.5456 -4.7212 -4.0142 20 6 10.3856 -5.3993 -3.1467 21 7 10.9547 -5.9585 -2.1025 22 14 11.4214 -4.8972 -4.6179 23 1 10.5475 -4.2928 -5.6554 24 1 12.4411 -3.9060 -4.1903 25 1 12.0989 -6.0942 -5.1779 26 6 3.4386 -7.2607 -0.1425 27 6 2.5571 -7.6576 1.0434 28 6 2.6648 -7.4701 -1.4457 29 1 -0.3634 0.0031 1.0276 30 1 -0.3634 0.8884 -0.5165 31 1 -0.3634 -0.8915 -0.5111 32 1 2.0559 2.1075 -0.0004 33 1 3.8887 -3.2558 -0.0071 34 1 1.9874 -5.1421 0.8893 35 1 1.9756 -5.1361 -0.8906 36 1 4.3543 -5.8380 -2.0055 37 1 6.4318 -5.2073 -0.0120 38 1 6.1820 -6.8143 -0.7355 39 1 8.6735 -5.9606 -1.3050 40 1 11.9127 -6.1109 -2.0960 41 1 4.3369 -7.8780 -0.1497 42 1 3.1084 -7.5083 1.9718 43 1 1.6588 -7.0402 1.0510 44 1 2.2759 -8.7066 0.9520 45 1 3.2928 -7.1874 -2.2906 46 1 2.3843 -8.5193 -1.5370 47 1 1.7665 -6.8528 -1.4381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667508509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:52 Heat of formation + Delta-G solvation = -18.189024 kcal Electronic energy + Delta-G solvation = -29411.646442 eV Core-core repulsion = 25211.666583 eV Total energy + Delta-G solvation = -4199.979859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.22753 -39.86463 -38.71558 -37.67785 -34.87098 -34.37044 -34.04903 -33.07854 -32.43838 -31.21428 -28.90294 -28.25934 -27.49077 -26.29131 -24.78078 -23.75458 -23.00367 -21.82511 -20.65310 -19.63254 -19.32378 -18.26902 -17.91365 -17.90060 -16.76097 -16.58913 -15.87749 -15.48883 -15.31073 -14.83588 -14.53148 -14.47254 -14.43631 -13.93763 -13.85434 -13.54483 -13.48239 -13.40547 -13.25633 -13.18230 -12.55928 -12.36135 -12.29430 -12.04590 -11.91944 -11.64254 -11.51777 -11.50410 -11.21319 -11.03639 -10.91524 -10.62081 -10.42953 -10.34807 -10.26029 -10.23083 -9.63753 -9.52798 -9.05349 -8.50279 -8.10601 -7.96968 -6.42728 -3.83356 1.04051 1.49352 2.84504 3.02719 3.13178 3.15840 3.26554 3.33921 3.84673 3.89208 4.04481 4.27503 4.42898 4.60546 4.64527 4.72265 4.87210 4.88432 5.09912 5.12068 5.18928 5.24947 5.25596 5.40433 5.41850 5.43420 5.51494 5.59047 5.60704 5.71459 5.73244 5.79343 5.85626 5.92303 5.94990 6.01775 6.12050 6.18424 6.25361 6.38933 7.11808 7.42295 7.54731 7.58890 7.88851 8.05497 8.08727 8.60035 9.17223 9.53221 10.04496 10.75065 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009157 B = 0.002973 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.921729 B = 9417.061337 C =11904.747838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.153 4.153 3 C -0.071 4.071 4 O 0.127 5.873 5 N -0.321 5.321 6 C -0.030 4.030 7 C 0.597 3.403 8 O -0.533 6.533 9 N -0.693 5.693 10 C 0.130 3.870 11 C 0.076 3.924 12 H 0.085 0.915 13 N -0.664 5.664 14 C 0.049 3.951 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C -0.123 4.123 27 C -0.148 4.148 28 C -0.156 4.156 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.222 0.778 33 H 0.416 0.584 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.354 0.646 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.753 5.667 9.706 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C -0.152 4.152 4 O 0.050 5.950 5 N -0.020 5.020 6 C -0.190 4.190 7 C 0.380 3.620 8 O -0.410 6.410 9 N -0.345 5.345 10 C 0.006 3.994 11 C -0.036 4.036 12 H 0.103 0.897 13 N -0.298 5.298 14 C -0.084 4.084 15 C 0.226 3.774 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.144 4.144 27 C -0.206 4.206 28 C -0.213 4.213 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.239 0.761 33 H 0.253 0.747 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.177 0.823 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.450 5.738 9.255 21.424 hybrid contribution 0.693 -0.687 -0.307 1.023 sum -17.757 5.051 8.948 20.516 Atomic orbital electron populations 1.20197 0.86659 1.03833 1.03029 1.21356 0.99054 0.90155 1.05263 1.25789 0.82553 1.01293 1.05529 1.84815 1.29379 1.15281 1.65482 1.74268 1.21512 0.91521 1.14695 1.23476 0.89526 0.97213 1.08756 1.16837 0.85556 0.82408 0.77157 1.90748 1.17506 1.81782 1.50935 1.45704 1.10498 1.05891 1.72378 1.21556 0.96464 0.78951 1.02404 1.21907 0.93714 0.92155 0.95785 0.89653 1.60242 1.00989 1.63814 1.04759 1.21724 0.88866 0.98920 0.98844 1.19787 0.83168 0.85410 0.89075 1.90537 1.72003 1.47880 1.36214 1.41860 1.05385 1.54191 1.18548 1.19748 0.89026 1.37123 0.96863 0.87897 1.25260 0.97143 0.97156 0.98391 1.69622 1.11944 1.43394 1.29356 0.85808 0.79490 0.78178 0.80928 1.19209 1.20708 1.20783 1.21745 0.99628 0.96801 0.96222 1.21872 0.99780 1.01443 0.97461 1.21959 1.00540 1.01921 0.96914 0.90695 0.91111 0.89469 0.76143 0.74681 0.90790 0.90738 0.82306 0.89615 0.93673 0.77498 0.91931 0.90510 0.92548 0.92186 0.92583 0.92088 0.92341 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.15 -1.63 6.34 -104.12 -0.66 -2.29 16 3 C -0.07 -0.58 12.24 29.69 0.36 -0.22 16 4 O 0.13 1.46 11.18 17.25 0.19 1.65 16 5 N -0.32 -4.52 11.84 33.29 0.39 -4.12 16 6 C -0.03 -0.41 7.19 -82.53 -0.59 -1.01 16 7 C 0.60 8.78 7.85 -12.11 -0.10 8.68 16 8 O -0.53 -8.53 15.34 5.36 0.08 -8.44 16 9 N -0.69 -9.53 5.39 -61.09 -0.33 -9.86 16 10 C 0.13 1.55 4.65 -4.04 -0.02 1.54 16 11 C 0.08 0.87 2.02 -67.71 -0.14 0.73 16 12 H 0.09 0.94 7.80 -51.93 -0.40 0.54 16 13 N -0.66 -10.09 5.31 -107.99 -0.57 -10.66 16 14 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 15 C 0.44 10.24 7.82 -10.99 -0.09 10.15 16 16 O -0.58 -15.71 15.78 5.54 0.09 -15.62 16 17 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.12 -1.24 2.82 -90.62 -0.26 -1.49 16 27 C -0.15 -1.24 8.84 37.16 0.33 -0.91 16 28 C -0.16 -1.59 8.58 37.16 0.32 -1.27 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.91 6.89 -51.93 -0.36 0.56 16 32 H 0.22 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.42 6.05 7.90 -40.82 -0.32 5.73 16 34 H 0.07 0.81 6.71 -51.93 -0.35 0.46 16 35 H 0.07 0.94 6.18 -51.93 -0.32 0.62 16 36 H 0.35 5.74 5.98 -39.29 -0.23 5.51 16 37 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 38 H 0.05 0.69 7.44 -51.93 -0.39 0.30 16 39 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 0.82 7.45 -51.93 -0.39 0.43 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.71 6.26 -51.93 -0.32 0.39 16 46 H 0.06 0.54 8.14 -51.94 -0.42 0.11 16 47 H 0.06 0.62 6.32 -51.93 -0.33 0.29 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -33.45 389.20 -5.93 -39.38 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -6.54 Total: 17.33 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.75 Total: 6.42 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.16 Total: -62.69 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.36 Total: -22.41 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.45 -5.93 -39.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667508509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.191 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds