Wall clock time and date at job start Tue Mar 31 2020 21:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35318 * 128.03976 * 2 1 4 4 O 1.34013 * 106.67050 * 180.25962 * 3 2 1 5 5 N 1.20905 * 111.83953 * 359.72964 * 4 3 2 6 6 C 1.30979 * 111.44647 * 359.97438 * 5 4 3 7 7 C 1.48329 * 126.94034 * 179.97438 * 6 5 4 8 8 O 1.21503 * 120.00051 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99999 * 359.75033 * 7 6 5 10 10 C 1.46504 * 119.99858 * 180.27206 * 9 7 6 11 11 C 1.53004 * 109.46932 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46561 * 65.00421 * 11 10 9 13 13 N 1.46897 * 109.47090 * 305.00332 * 11 10 9 14 14 C 1.46900 * 110.99554 * 154.99992 * 13 11 10 15 15 C 1.50700 * 109.47050 * 179.97438 * 14 13 11 16 16 O 1.21298 * 119.99682 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00362 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00384 * 180.02562 * 17 15 14 19 19 H 1.08006 * 119.99658 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00420 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99551 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47075 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47312 * 119.99658 * 22 20 18 25 25 H 1.48502 * 109.46860 * 239.99812 * 22 20 18 26 26 C 1.53002 * 109.47059 * 185.00121 * 11 10 9 27 27 C 1.53004 * 109.47142 * 300.00162 * 26 11 10 28 28 C 1.53001 * 109.47119 * 60.00065 * 26 11 10 29 29 H 1.08998 * 109.47310 * 270.17413 * 1 2 3 30 30 H 1.08999 * 109.47501 * 30.17119 * 1 2 3 31 31 H 1.08997 * 109.47625 * 150.17268 * 1 2 3 32 32 H 1.08001 * 126.66415 * 359.97438 * 3 2 1 33 33 H 0.96991 * 119.99719 * 0.28109 * 9 7 6 34 34 H 1.08998 * 109.47306 * 300.00567 * 10 9 7 35 35 H 1.08997 * 109.46860 * 60.00391 * 10 9 7 36 36 H 1.00894 * 110.99879 * 278.95144 * 13 11 10 37 37 H 1.09001 * 109.47243 * 299.99520 * 14 13 11 38 38 H 1.08994 * 109.47412 * 60.00217 * 14 13 11 39 39 H 0.96996 * 120.00120 * 359.97438 * 17 15 14 40 40 H 0.97007 * 119.99542 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.46896 * 180.02562 * 26 11 10 42 42 H 1.09002 * 109.47058 * 300.00270 * 27 26 11 43 43 H 1.09001 * 109.46760 * 60.00063 * 27 26 11 44 44 H 1.08994 * 109.47049 * 179.97438 * 27 26 11 45 45 H 1.09000 * 109.47071 * 59.99867 * 28 26 11 46 46 H 1.08988 * 109.46889 * 179.97438 * 28 26 11 47 47 H 1.09001 * 109.46957 * 300.00106 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5774 -0.0058 5 7 3.5988 -0.6316 -0.0039 6 6 2.3837 -1.1205 0.0038 7 6 1.9992 -2.5531 0.0078 8 8 0.8255 -2.8671 0.0146 9 7 2.9518 -3.5065 -0.0018 10 6 2.5720 -4.9214 -0.0039 11 6 3.8329 -5.7879 -0.0146 12 1 4.3841 -5.6387 0.9138 13 7 4.6792 -5.4068 -1.1532 14 6 6.0868 -5.7407 -0.8978 15 6 6.9223 -5.3367 -2.0851 16 8 6.3969 -4.8209 -3.0491 17 7 8.2533 -5.5485 -2.0760 18 6 9.0135 -5.1805 -3.1559 19 1 8.5456 -4.7212 -4.0142 20 6 10.3856 -5.3993 -3.1467 21 7 10.9547 -5.9585 -2.1025 22 14 11.4214 -4.8972 -4.6179 23 1 10.5475 -4.2928 -5.6554 24 1 12.4411 -3.9060 -4.1903 25 1 12.0989 -6.0942 -5.1779 26 6 3.4386 -7.2607 -0.1425 27 6 2.5571 -7.6576 1.0434 28 6 2.6648 -7.4701 -1.4457 29 1 -0.3634 0.0031 1.0276 30 1 -0.3634 0.8884 -0.5165 31 1 -0.3634 -0.8915 -0.5111 32 1 2.0559 2.1075 -0.0004 33 1 3.8887 -3.2558 -0.0071 34 1 1.9874 -5.1421 0.8893 35 1 1.9756 -5.1361 -0.8906 36 1 4.3543 -5.8380 -2.0055 37 1 6.4318 -5.2073 -0.0120 38 1 6.1820 -6.8143 -0.7355 39 1 8.6735 -5.9606 -1.3050 40 1 11.9127 -6.1109 -2.0960 41 1 4.3369 -7.8780 -0.1497 42 1 3.1084 -7.5083 1.9718 43 1 1.6588 -7.0402 1.0510 44 1 2.2759 -8.7066 0.9520 45 1 3.2928 -7.1874 -2.2906 46 1 2.3843 -8.5193 -1.5370 47 1 1.7665 -6.8528 -1.4381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667508509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:51 Heat of formation + Delta-G solvation = -44.101516 kcal Electronic energy + Delta-G solvation = -29412.770092 eV Core-core repulsion = 25211.666583 eV Total energy + Delta-G solvation = -4201.103509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.13185 -40.97087 -40.22653 -39.07920 -36.03110 -35.69380 -35.42540 -34.32827 -33.33161 -33.23621 -29.97539 -29.05969 -28.38728 -27.70158 -26.16951 -25.11860 -23.96165 -22.66176 -21.65063 -21.14190 -20.53822 -19.94303 -19.19596 -18.83922 -18.02185 -17.61372 -17.32092 -16.71536 -16.62077 -16.40732 -15.92124 -15.74777 -15.41169 -15.33425 -15.17592 -14.74130 -14.34571 -14.24150 -14.19061 -14.03877 -13.79193 -13.58822 -13.47925 -13.31085 -13.15876 -12.93841 -12.82269 -12.60066 -12.41865 -12.34942 -12.13655 -12.10299 -11.77547 -11.53143 -11.48346 -11.37073 -11.34799 -10.38847 -10.36783 -10.12968 -10.02380 -9.35291 -8.48189 -5.96565 0.10133 0.73156 1.35049 1.40423 1.54447 1.87792 2.04291 2.05811 2.27555 2.32465 2.84034 2.94829 3.19291 3.46495 3.60780 3.69713 3.83727 3.94880 4.00693 4.10774 4.21286 4.28942 4.31097 4.43485 4.46537 4.56597 4.65087 4.69355 4.79509 4.79652 4.82557 4.84291 4.96026 4.97350 5.03418 5.17071 5.24256 5.34235 5.36561 5.39981 5.46155 5.85576 6.06447 6.31691 6.33147 6.58873 6.91956 7.10169 7.11797 7.55268 8.10866 8.69413 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009157 B = 0.002973 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.921729 B = 9417.061337 C =11904.747838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.173 4.173 3 C -0.041 4.041 4 O 0.126 5.874 5 N -0.355 5.355 6 C -0.060 4.060 7 C 0.591 3.409 8 O -0.554 6.554 9 N -0.694 5.694 10 C 0.132 3.868 11 C 0.083 3.917 12 H 0.098 0.902 13 N -0.677 5.677 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.624 6.624 17 N -0.572 5.572 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.117 4.117 27 C -0.143 4.143 28 C -0.155 4.155 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.277 0.723 33 H 0.412 0.588 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.347 0.653 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.070 0.930 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.155 6.385 10.778 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.179 4.179 3 C -0.121 4.121 4 O 0.049 5.951 5 N -0.054 5.054 6 C -0.217 4.217 7 C 0.375 3.625 8 O -0.432 6.432 9 N -0.344 5.344 10 C 0.008 3.992 11 C -0.027 4.027 12 H 0.116 0.884 13 N -0.310 5.310 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.138 4.138 27 C -0.201 4.201 28 C -0.212 4.212 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.292 0.708 33 H 0.248 0.752 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.169 0.831 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.847 6.421 10.365 22.447 hybrid contribution 0.749 -0.844 -0.632 1.293 sum -18.098 5.577 9.732 21.292 Atomic orbital electron populations 1.20212 0.85317 1.04056 1.03621 1.21737 1.00147 0.89784 1.06215 1.26736 0.80515 1.02860 1.01971 1.84763 1.31074 1.14423 1.64857 1.74264 1.22088 0.92707 1.16328 1.23638 0.90517 0.97425 1.10160 1.17099 0.85413 0.83183 0.76798 1.90721 1.18097 1.82296 1.52057 1.45797 1.10108 1.06530 1.71960 1.21632 0.96674 0.78217 1.02633 1.21937 0.92964 0.93145 0.94698 0.88440 1.60208 1.00545 1.64519 1.05762 1.21568 0.88703 1.00401 0.96012 1.20889 0.82890 0.83522 0.90166 1.90506 1.72713 1.49357 1.38447 1.41918 1.06118 1.54766 1.18175 1.19668 0.90122 1.38964 0.97419 0.90550 1.26012 0.97575 0.96626 1.00983 1.69675 1.12566 1.43341 1.30484 0.84900 0.77760 0.78283 0.77577 1.19941 1.19561 1.19509 1.21683 0.99904 0.95317 0.96856 1.21838 0.99477 1.02009 0.96796 1.21945 1.00204 1.02654 0.96397 0.89914 0.87973 0.92059 0.70788 0.75208 0.89335 0.91651 0.83128 0.87688 0.91273 0.76971 0.91299 0.90659 0.91728 0.92030 0.91682 0.93991 0.91149 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.01 71.24 0.71 -0.46 16 2 C -0.17 -3.48 6.34 -19.54 -0.12 -3.61 16 3 C -0.04 -0.56 12.24 67.15 0.82 0.26 16 4 O 0.13 2.76 11.18 71.91 0.80 3.56 16 5 N -0.35 -10.07 11.84 -49.52 -0.59 -10.66 16 6 C -0.06 -1.66 7.19 42.96 0.31 -1.35 16 7 C 0.59 17.85 7.85 86.93 0.68 18.53 16 8 O -0.55 -18.16 15.34 -3.73 -0.06 -18.21 16 9 N -0.69 -19.43 5.39 -465.49 -2.51 -21.94 16 10 C 0.13 3.11 4.65 86.38 0.40 3.51 16 11 C 0.08 1.83 2.02 44.92 0.09 1.92 16 12 H 0.10 1.96 7.80 -2.39 -0.02 1.94 16 13 N -0.68 -20.50 5.31 -495.58 -2.63 -23.14 16 14 C 0.07 2.16 5.97 85.56 0.51 2.67 16 15 C 0.44 20.75 7.82 87.66 0.69 21.43 16 16 O -0.62 -34.84 15.78 -3.08 -0.05 -34.89 16 17 N -0.57 -29.38 5.29 -306.98 -1.62 -31.01 16 18 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 19 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 22 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 26 C -0.12 -2.18 2.82 -10.79 -0.03 -2.21 16 27 C -0.14 -2.09 8.84 71.98 0.64 -1.45 16 28 C -0.15 -3.07 8.58 71.98 0.62 -2.45 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.29 6.89 -2.39 -0.02 1.27 16 32 H 0.28 0.36 8.06 -2.91 -0.02 0.33 16 33 H 0.41 12.27 7.90 -92.72 -0.73 11.54 16 34 H 0.09 1.85 6.71 -2.39 -0.02 1.84 16 35 H 0.07 1.68 6.18 -2.39 -0.01 1.66 16 36 H 0.35 11.48 5.98 -89.70 -0.54 10.94 16 37 H 0.11 3.11 8.06 -2.39 -0.02 3.09 16 38 H 0.07 1.99 7.44 -2.39 -0.02 1.97 16 39 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 40 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 41 H 0.08 1.46 7.45 -2.39 -0.02 1.44 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.89 6.54 -2.39 -0.02 0.87 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.04 0.99 6.26 -2.39 -0.01 0.98 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.06 1.23 6.32 -2.39 -0.02 1.22 16 Total: -1.00 -75.49 389.20 1.29 -74.20 By element: Atomic # 1 Polarization: 48.70 SS G_CDS: -0.96 Total: 47.75 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.59 Total: 18.41 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -7.07 Total: -136.18 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: 0.70 Total: -49.53 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -75.49 1.29 -74.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667508509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.097 kcal (2) G-P(sol) polarization free energy of solvation -75.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds