Wall clock time and date at job start Tue Mar 31 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47416 * 2 1 4 4 N 1.33696 * 126.27286 * 90.02307 * 3 2 1 5 5 C 1.30620 * 108.99531 * 179.97438 * 4 3 2 6 6 O 1.33666 * 109.15440 * 0.02562 * 5 4 3 7 7 C 1.35351 * 107.68276 * 359.75380 * 6 5 4 8 8 C 1.46723 * 126.64244 * 180.26275 * 7 6 5 9 9 O 1.21680 * 120.00030 * 172.74898 * 8 7 6 10 10 N 1.34776 * 119.99825 * 352.75490 * 8 7 6 11 11 C 1.46498 * 120.00383 * 3.61573 * 10 8 7 12 12 C 1.46507 * 119.99880 * 183.61189 * 10 8 7 13 13 C 1.53003 * 109.46781 * 90.00013 * 12 10 8 14 14 N 1.46903 * 109.46788 * 180.02562 * 13 12 10 15 15 C 1.46900 * 111.00105 * 66.04536 * 14 13 12 16 16 C 1.46898 * 110.99922 * 190.00074 * 14 13 12 17 17 C 1.50701 * 109.47175 * 169.99814 * 16 14 13 18 18 O 1.21295 * 119.99893 * 0.02562 * 17 16 14 19 19 N 1.34778 * 119.99711 * 179.97438 * 17 16 14 20 20 C 1.37095 * 119.99398 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00402 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99705 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00319 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00055 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47296 * 89.99840 * 24 22 20 26 26 H 1.48495 * 109.47458 * 209.99874 * 24 22 20 27 27 H 1.48507 * 109.47116 * 330.00051 * 24 22 20 28 28 H 1.09003 * 109.47091 * 59.99883 * 1 2 3 29 29 H 1.09003 * 109.47483 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47434 * 300.00124 * 1 2 3 31 31 H 1.09004 * 109.47197 * 239.99420 * 2 1 3 32 32 H 1.09003 * 109.47091 * 120.00117 * 2 1 3 33 33 H 1.07992 * 125.42101 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47478 * 83.96119 * 11 10 8 35 35 H 1.09001 * 109.46856 * 203.96557 * 11 10 8 36 36 H 1.09006 * 109.46599 * 323.96436 * 11 10 8 37 37 H 1.08996 * 109.47328 * 210.00256 * 12 10 8 38 38 H 1.09002 * 109.47125 * 330.00119 * 12 10 8 39 39 H 1.09004 * 109.46829 * 299.99925 * 13 12 10 40 40 H 1.08989 * 109.47278 * 60.00500 * 13 12 10 41 41 H 1.08994 * 109.47112 * 60.00110 * 15 14 13 42 42 H 1.09003 * 109.47272 * 179.97438 * 15 14 13 43 43 H 1.09000 * 109.47216 * 299.99915 * 15 14 13 44 44 H 1.08996 * 109.46726 * 289.99842 * 16 14 13 45 45 H 1.09001 * 109.46978 * 49.99987 * 16 14 13 46 46 H 0.96992 * 120.00305 * 359.97438 * 19 17 16 47 47 H 0.97000 * 120.00181 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2965 2.1663 1.0779 5 6 2.7126 3.3421 0.6899 6 8 2.7265 3.3836 -0.6460 7 6 2.3057 2.1796 -1.0992 8 6 2.1681 1.7712 -2.5016 9 8 1.9044 0.6153 -2.7756 10 7 2.3339 2.6762 -3.4864 11 6 2.7292 4.0488 -3.1610 12 6 2.1189 2.2873 -4.8825 13 6 0.6552 2.5258 -5.2587 14 7 0.4395 2.1353 -6.6583 15 6 0.6140 0.6873 -6.8338 16 6 -0.8841 2.5666 -7.1272 17 6 -0.9765 2.3725 -8.6188 18 8 -0.0327 1.9190 -9.2310 19 7 -2.1082 2.7020 -9.2724 20 6 -2.1924 2.5249 -10.6293 21 1 -1.3518 2.1218 -11.1744 22 6 -3.3593 2.8640 -11.3031 23 7 -3.4399 2.6948 -12.6038 24 14 -4.8136 3.5605 -10.3600 25 1 -4.7075 5.0409 -10.3091 26 1 -6.0755 3.1780 -11.0429 27 1 -4.8139 3.0165 -8.9782 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9998 4.1517 1.3444 34 1 3.8125 4.0991 -3.0530 35 1 2.4123 4.7175 -3.9614 36 1 2.2564 4.3511 -2.2265 37 1 2.7622 2.8841 -5.5291 38 1 2.3586 1.2312 -5.0065 39 1 0.0120 1.9289 -4.6120 40 1 0.4156 3.5818 -5.1347 41 1 -0.1036 0.1564 -6.2083 42 1 0.4482 0.4253 -7.8788 43 1 1.6265 0.4056 -6.5444 44 1 -1.6549 1.9735 -6.6352 45 1 -1.0286 3.6203 -6.8883 46 1 -2.8633 3.0636 -8.7827 47 1 -4.2544 2.9319 -13.0742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667623394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:36 Heat of formation + Delta-G solvation = -22.402427 kcal Electronic energy + Delta-G solvation = -29281.760361 eV Core-core repulsion = 25081.597796 eV Total energy + Delta-G solvation = -4200.162566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.92197 -40.13357 -38.76296 -37.06520 -36.29933 -35.35178 -33.90183 -33.35549 -31.67883 -30.85324 -29.53914 -27.86475 -27.15790 -25.79454 -24.69016 -24.05471 -23.44084 -21.83849 -21.06570 -20.11978 -19.34409 -18.25778 -17.91468 -17.47904 -17.08243 -16.70248 -16.14032 -15.56486 -15.32058 -15.29937 -14.94974 -14.71120 -14.49893 -14.19764 -13.89010 -13.82119 -13.50302 -13.44065 -13.09177 -13.04834 -12.92110 -12.60179 -12.43743 -12.19251 -11.94426 -11.80868 -11.54619 -11.47239 -11.41387 -11.32877 -11.19288 -11.02839 -10.88094 -10.59743 -10.41582 -9.97573 -9.53654 -9.47293 -9.08221 -8.55537 -8.17844 -7.98538 -6.30763 -3.82043 0.39306 1.97610 1.98542 2.57769 2.71248 3.02564 3.06615 3.14973 3.56199 3.74071 3.97476 4.10252 4.12904 4.26741 4.68636 4.78155 4.81790 4.90096 4.93862 4.98690 5.07038 5.09326 5.14551 5.22003 5.25171 5.38320 5.48546 5.51252 5.63007 5.64698 5.67271 5.72571 5.77379 5.83692 5.85064 5.92993 5.97397 5.98428 6.11571 6.53700 6.80775 7.12020 7.13145 7.26808 7.58849 7.61315 8.15037 8.60706 8.95727 9.42903 9.83965 10.82346 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002064 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.632028 B =13561.973669 C =13765.120747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 C 0.085 3.915 4 N -0.491 5.491 5 C 0.194 3.806 6 O -0.186 6.186 7 C -0.111 4.111 8 C 0.605 3.395 9 O -0.507 6.507 10 N -0.604 5.604 11 C 0.072 3.928 12 C 0.118 3.882 13 C 0.041 3.959 14 N -0.516 5.516 15 C 0.019 3.981 16 C 0.044 3.956 17 C 0.454 3.546 18 O -0.558 6.558 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.255 0.745 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.017 0.983 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.401 3.388 29.055 31.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 C -0.039 4.039 4 N -0.220 5.220 5 C -0.031 4.031 6 O -0.073 6.073 7 C -0.165 4.165 8 C 0.392 3.608 9 O -0.384 6.384 10 N -0.336 5.336 11 C -0.070 4.070 12 C -0.004 4.004 13 C -0.088 4.088 14 N -0.240 5.240 15 C -0.129 4.129 16 C -0.087 4.087 17 C 0.239 3.761 18 O -0.440 6.440 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.036 0.964 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.096 2.607 28.547 30.739 hybrid contribution -1.784 0.852 0.666 2.086 sum 9.312 3.459 29.214 30.856 Atomic orbital electron populations 1.21644 0.93699 1.02510 1.01941 1.20221 0.96703 0.87728 1.04693 1.22090 0.97358 0.98180 0.86308 1.70366 1.16841 1.03291 1.31488 1.28404 0.97091 0.97585 0.79996 1.84709 1.65057 1.33532 1.23981 1.22908 1.12334 0.85103 0.96203 1.16465 0.77716 0.85241 0.81417 1.90877 1.48772 1.17287 1.81507 1.47736 1.67455 1.11403 1.07006 1.22059 1.00751 0.81735 1.02484 1.21603 0.96812 1.03151 0.78845 1.22439 0.96146 1.00912 0.89344 1.61512 1.29043 1.16337 1.17094 1.22610 1.00234 0.85876 1.04147 1.21892 0.89966 1.01257 0.95626 1.19611 0.83993 0.84422 0.88044 1.90528 1.37270 1.47878 1.68300 1.42212 1.13430 1.58701 1.08779 1.19424 1.02519 1.40642 0.80633 0.86241 1.25039 0.97775 0.97830 0.95570 1.69621 1.28322 1.47352 1.06873 0.86676 0.83018 0.79953 0.79758 1.19629 1.20203 1.19547 0.92532 0.91467 0.92675 0.87899 0.89939 0.72907 0.92007 0.89881 0.90257 0.88765 0.88953 0.94663 0.90833 0.96422 0.88464 0.91790 0.93309 0.89344 0.79747 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.06 -0.53 6.01 -27.89 -0.17 -0.69 16 3 C 0.08 0.87 6.41 -82.47 -0.53 0.34 16 4 N -0.49 -4.54 11.26 -10.89 -0.12 -4.66 16 5 C 0.19 1.14 13.21 52.25 0.69 1.83 16 6 O -0.19 -1.40 7.50 4.40 0.03 -1.36 16 7 C -0.11 -1.12 6.79 -36.84 -0.25 -1.37 16 8 C 0.60 6.98 7.64 -12.83 -0.10 6.88 16 9 O -0.51 -7.08 14.33 5.21 0.07 -7.00 16 10 N -0.60 -5.99 2.87 -183.11 -0.53 -6.52 16 11 C 0.07 0.49 9.65 59.85 0.58 1.07 16 12 C 0.12 1.31 5.33 -4.04 -0.02 1.29 16 13 C 0.04 0.51 5.28 -3.82 -0.02 0.49 16 14 N -0.52 -8.21 4.50 -244.37 -1.10 -9.31 16 15 C 0.02 0.31 8.96 60.06 0.54 0.85 16 16 C 0.04 0.74 5.45 -4.98 -0.03 0.72 16 17 C 0.45 10.25 7.47 -10.98 -0.08 10.17 16 18 O -0.56 -14.73 13.91 5.54 0.08 -14.65 16 19 N -0.59 -14.06 5.09 -10.96 -0.06 -14.12 16 20 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 24 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.10 1.08 6.33 -51.93 -0.33 0.75 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.26 0.09 8.06 -52.49 -0.42 -0.33 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 36 H 0.08 0.51 5.42 -51.93 -0.28 0.22 16 37 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 38 H 0.09 1.15 5.78 -51.93 -0.30 0.85 16 39 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 40 H 0.07 0.82 7.93 -51.94 -0.41 0.40 16 41 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.10 1.90 5.82 -51.93 -0.30 1.60 16 43 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 45 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 46 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 47 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -35.26 386.05 -5.81 -41.07 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.80 Total: 8.05 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 0.73 Total: 13.01 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -1.03 Total: -59.57 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.18 Total: -23.02 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.26 -5.81 -41.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667623394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.667 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds