Wall clock time and date at job start Tue Mar 31 2020 22:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47088 * 2 1 4 4 C 1.35314 * 126.66452 * 90.26113 * 3 2 1 5 5 C 1.42274 * 103.92108 * 180.11459 * 4 3 2 6 6 C 1.48328 * 126.94296 * 179.91281 * 5 4 3 7 7 O 1.21501 * 119.99569 * 353.79924 * 6 5 4 8 8 N 1.34772 * 120.00315 * 173.80365 * 6 5 4 9 9 C 1.46499 * 120.00164 * 3.90528 * 8 6 5 10 10 C 1.52997 * 109.47094 * 83.70296 * 9 8 6 11 11 C 1.46506 * 119.99914 * 183.90892 * 8 6 5 12 12 C 1.52996 * 109.47144 * 89.99884 * 11 8 6 13 13 N 1.46906 * 109.46753 * 179.97438 * 12 11 8 14 14 C 1.46901 * 110.99790 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47003 * 180.02562 * 14 13 12 16 16 O 1.21297 * 120.00265 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00094 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00249 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99619 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00321 * 180.02562 * 18 17 15 21 21 N 1.31402 * 120.00168 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99576 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46801 * 90.00465 * 22 20 18 24 24 H 1.48499 * 109.46816 * 209.99784 * 22 20 18 25 25 H 1.48495 * 109.47397 * 330.00251 * 22 20 18 26 26 N 1.30987 * 106.11859 * 359.64141 * 5 4 3 27 27 O 1.20900 * 111.44307 * 0.23261 * 26 5 4 28 28 H 1.09004 * 109.47306 * 299.99893 * 1 2 3 29 29 H 1.08994 * 109.47407 * 60.00343 * 1 2 3 30 30 H 1.08997 * 109.46721 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47348 * 239.99625 * 2 1 3 32 32 H 1.09003 * 109.47189 * 119.99660 * 2 1 3 33 33 H 1.08004 * 128.04280 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.46990 * 203.70748 * 9 8 6 35 35 H 1.09000 * 109.46737 * 323.70511 * 9 8 6 36 36 H 1.09001 * 109.47226 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.47239 * 300.00333 * 10 9 8 38 38 H 1.09000 * 109.47153 * 60.00470 * 10 9 8 39 39 H 1.09004 * 109.46650 * 209.99663 * 11 8 6 40 40 H 1.08998 * 109.47124 * 329.99239 * 11 8 6 41 41 H 1.09004 * 109.47167 * 299.99462 * 12 11 8 42 42 H 1.08993 * 109.47179 * 59.99669 * 12 11 8 43 43 H 1.00893 * 110.99972 * 56.04689 * 13 12 11 44 44 H 1.09008 * 109.46840 * 299.99824 * 14 13 12 45 45 H 1.08993 * 109.47477 * 59.99850 * 14 13 12 46 46 H 0.97000 * 119.99820 * 359.97438 * 17 15 14 47 47 H 0.97000 * 119.99944 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3063 2.1810 1.0854 5 6 2.7387 3.4198 0.5354 6 6 3.1659 4.6269 1.2841 7 8 3.0625 4.6594 2.4942 8 7 3.6688 5.6877 0.6220 9 6 3.7143 5.6829 -0.8423 10 6 2.3598 6.1294 -1.3960 11 6 4.1700 6.8455 1.3667 12 6 5.6575 6.6528 1.6686 13 7 6.1601 7.8141 2.4148 14 6 7.5884 7.6634 2.7235 15 6 8.0671 8.8706 3.4880 16 8 7.2944 9.7680 3.7504 17 7 9.3536 8.9527 3.8812 18 6 9.7893 10.0512 4.5762 19 1 9.1014 10.8505 4.8090 20 6 11.1158 10.1360 4.9811 21 7 11.5333 11.1887 5.6477 22 14 12.3054 8.7530 4.5789 23 1 12.9481 9.0189 3.2668 24 1 13.3476 8.6742 5.6337 25 1 11.5660 7.4667 4.5164 26 7 2.6889 3.2772 -0.7657 27 8 2.2995 2.1752 -1.0750 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.2155 1.9110 2.1272 34 1 4.4902 6.3680 -1.1839 35 1 3.9373 4.6762 -1.1955 36 1 2.3935 6.1254 -2.4855 37 1 1.5839 5.4442 -1.0544 38 1 2.1368 7.1361 -1.0428 39 1 4.0343 7.7476 0.7701 40 1 3.6189 6.9422 2.3021 41 1 5.7932 5.7506 2.2652 42 1 6.2085 6.5561 0.7332 43 1 5.6227 7.9640 3.2554 44 1 7.7370 6.7685 3.3280 45 1 8.1531 7.5730 1.7957 46 1 9.9713 8.2345 3.6723 47 1 12.4592 11.2477 5.9307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668619847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:20 Heat of formation + Delta-G solvation = 5.142458 kcal Electronic energy + Delta-G solvation = -28486.389325 eV Core-core repulsion = 24287.421195 eV Total energy + Delta-G solvation = -4198.968130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.51030 -40.25048 -38.46532 -36.77550 -35.54548 -35.40019 -34.20729 -33.83858 -31.68761 -31.38112 -30.62908 -29.27733 -26.61778 -25.10061 -24.61427 -23.85325 -23.51293 -22.70057 -21.83649 -19.50830 -19.20228 -18.31597 -18.27271 -17.81502 -17.25973 -16.55406 -16.23285 -15.64406 -15.36219 -15.16936 -15.02622 -14.83894 -14.37955 -14.19310 -13.95062 -13.92648 -13.80327 -13.43595 -13.22339 -13.16215 -12.85513 -12.48558 -12.42536 -12.38507 -12.20412 -12.07614 -11.89684 -11.67513 -11.65534 -11.27402 -11.19528 -11.06302 -10.82311 -10.58485 -10.50916 -9.96336 -9.88854 -9.55958 -9.10064 -8.57875 -8.19930 -8.14944 -6.29726 -3.81052 0.69373 1.23454 2.34084 2.54348 2.79014 3.03863 3.07998 3.15961 3.46916 3.75469 3.87901 4.11126 4.20651 4.36334 4.48524 4.53958 4.57625 4.70021 4.80224 4.86106 4.87048 4.98445 5.04984 5.10010 5.17018 5.20595 5.24414 5.34247 5.41113 5.41716 5.46503 5.57225 5.58925 5.60863 5.73324 5.80208 5.83738 5.91963 5.94667 6.18424 6.92394 7.04185 7.50623 7.55375 7.59629 7.74723 8.15941 8.61220 8.96340 9.43842 9.84091 10.83416 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.001798 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.214471 B =15571.594506 C =16127.588428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.029 4.029 4 C -0.182 4.182 5 C -0.020 4.020 6 C 0.595 3.405 7 O -0.519 6.519 8 N -0.594 5.594 9 C 0.095 3.905 10 C -0.161 4.161 11 C 0.116 3.884 12 C 0.046 3.954 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.451 3.549 16 O -0.564 6.564 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 N -0.325 5.325 27 O 0.115 5.885 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.180 0.820 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.306 -25.854 -16.788 36.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.081 4.081 3 C -0.092 4.092 4 C -0.205 4.205 5 C -0.179 4.179 6 C 0.380 3.620 7 O -0.393 6.393 8 N -0.327 5.327 9 C -0.028 4.028 10 C -0.219 4.219 11 C -0.006 4.006 12 C -0.085 4.085 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.236 3.764 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 N -0.028 5.028 27 O 0.042 5.958 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.197 0.803 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.173 0.827 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.287 -23.839 -17.391 35.809 hybrid contribution 1.106 -1.960 1.142 2.524 sum -19.181 -25.798 -16.249 36.021 Atomic orbital electron populations 1.21812 0.93243 1.02973 1.03006 1.20178 0.96821 0.86029 1.05107 1.24523 1.02078 0.97157 0.85399 1.22437 1.04842 0.91588 1.01584 1.23468 1.06337 0.97875 0.90180 1.16996 0.77718 0.81118 0.86160 1.90826 1.54748 1.80954 1.12788 1.47840 1.60236 1.17001 1.07646 1.21948 0.98698 1.04022 0.78106 1.22086 0.97071 1.01434 1.01324 1.21515 0.94005 0.86923 0.98150 1.22265 0.95017 0.92229 0.98971 1.60009 1.02658 1.38402 1.28783 1.21692 0.89943 0.96695 0.99990 1.19681 0.83012 0.88951 0.84743 1.90567 1.54312 1.40660 1.59017 1.42198 1.08938 1.20236 1.51632 1.19442 0.95860 0.97850 1.30240 0.86251 1.25033 0.96940 0.97120 0.97038 1.69618 1.17159 1.27973 1.37374 0.86670 0.81699 0.81845 0.79164 1.19597 1.20175 1.19550 1.74351 1.14100 0.98958 1.15362 1.84793 1.59791 1.17546 1.33673 0.91933 0.91955 0.91037 0.89019 0.88187 0.80284 0.89616 0.88622 0.91204 0.92793 0.92346 0.88740 0.89295 0.95100 0.90946 0.82736 0.93684 0.89460 0.79694 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.38 9.89 37.16 0.37 -0.02 16 2 C -0.04 -0.12 6.50 -27.88 -0.18 -0.30 16 3 C -0.03 -0.18 6.73 -35.35 -0.24 -0.42 16 4 C -0.18 -1.51 10.93 -39.07 -0.43 -1.94 16 5 C -0.02 -0.21 6.70 -82.53 -0.55 -0.76 16 6 C 0.59 7.54 7.65 -12.11 -0.09 7.45 16 7 O -0.52 -8.11 16.51 5.36 0.09 -8.02 16 8 N -0.59 -6.57 2.49 -174.62 -0.43 -7.01 16 9 C 0.09 0.83 5.71 -4.04 -0.02 0.81 16 10 C -0.16 -1.30 9.77 37.16 0.36 -0.93 16 11 C 0.12 1.36 5.67 -4.04 -0.02 1.34 16 12 C 0.05 0.59 6.01 -3.82 -0.02 0.57 16 13 N -0.67 -10.75 6.13 -115.06 -0.70 -11.45 16 14 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 15 C 0.45 10.50 7.82 -10.99 -0.09 10.41 16 16 O -0.56 -15.46 15.78 5.54 0.09 -15.37 16 17 N -0.59 -14.38 5.09 -10.96 -0.06 -14.44 16 18 C -0.31 -8.79 10.16 -14.93 -0.15 -8.94 16 19 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 20 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 21 N -0.88 -26.03 13.96 55.50 0.77 -25.25 16 22 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 26 N -0.32 -3.05 7.55 33.29 0.25 -2.80 16 27 O 0.12 0.91 11.18 17.26 0.19 1.10 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.18 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.09 0.66 8.02 -51.93 -0.42 0.24 16 35 H 0.10 0.86 5.37 -51.93 -0.28 0.59 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.50 7.10 -51.93 -0.37 0.13 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 40 H 0.09 1.15 7.37 -51.93 -0.38 0.77 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.35 5.98 8.43 -39.30 -0.33 5.65 16 44 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 45 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -35.27 395.78 -6.81 -42.08 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -7.06 Total: 11.10 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.19 Total: 9.16 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.17 Total: -60.96 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.37 Total: -22.29 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.27 -6.81 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668619847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.224 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds