Wall clock time and date at job start Tue Mar 31 2020 20:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34485 * 126.83531 * 2 1 4 4 N 1.36449 * 108.85526 * 180.02562 * 3 2 1 5 5 H 0.97000 * 124.84812 * 179.97438 * 4 3 2 6 6 C 1.34655 * 110.30166 * 359.75328 * 4 3 2 7 7 C 1.50700 * 125.80757 * 180.29341 * 6 4 3 8 8 C 1.50693 * 109.46985 * 265.13481 * 7 6 4 9 9 N 1.34781 * 119.99959 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00284 * 359.97438 * 8 7 6 11 11 C 1.36778 * 108.39247 * 0.40678 * 6 4 3 12 12 C 1.47265 * 126.93774 * 179.87189 * 11 6 4 13 13 O 1.21623 * 120.00120 * 269.70579 * 12 11 6 14 14 N 1.34784 * 119.99864 * 89.70942 * 12 11 6 15 15 C 1.46493 * 119.99864 * 359.72450 * 14 12 11 16 16 C 1.53000 * 109.47637 * 90.00039 * 15 14 12 17 17 O 1.42902 * 109.47155 * 64.99443 * 16 15 14 18 18 C 1.46494 * 119.99635 * 179.97438 * 14 12 11 19 19 C 1.53002 * 109.47325 * 90.00335 * 18 14 12 20 20 N 1.46499 * 109.46936 * 179.97438 * 19 18 14 21 21 C 1.36938 * 119.99478 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00412 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99950 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99878 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00151 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46810 * 90.00053 * 25 23 21 27 27 H 1.48495 * 109.47286 * 210.00318 * 25 23 21 28 28 H 1.48501 * 109.47405 * 330.00508 * 25 23 21 29 29 H 1.08995 * 109.47003 * 269.97292 * 1 2 3 30 30 H 1.09000 * 109.46921 * 29.97534 * 1 2 3 31 31 H 1.09003 * 109.47172 * 149.97266 * 1 2 3 32 32 H 1.07998 * 125.57396 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46627 * 25.13383 * 7 6 4 34 34 H 1.09000 * 109.47251 * 145.13117 * 7 6 4 35 35 H 0.96998 * 119.99870 * 359.97438 * 9 8 7 36 36 H 0.97004 * 120.00291 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47192 * 209.99937 * 15 14 12 38 38 H 1.08996 * 109.47342 * 329.99648 * 15 14 12 39 39 H 1.08993 * 109.47617 * 184.99838 * 16 15 14 40 40 H 1.09001 * 109.46636 * 304.99828 * 16 15 14 41 41 H 0.96697 * 114.00170 * 180.02562 * 17 16 15 42 42 H 1.09003 * 109.47006 * 210.00121 * 18 14 12 43 43 H 1.09004 * 109.47665 * 329.99813 * 18 14 12 44 44 H 1.08998 * 109.46465 * 299.99693 * 19 18 14 45 45 H 1.08993 * 109.47021 * 59.99589 * 19 18 14 46 46 H 0.96994 * 120.00305 * 0.02562 * 20 19 18 47 47 H 0.96996 * 119.99938 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3841 1.2413 -0.0011 6 6 3.6657 -0.6903 0.0045 7 6 4.9225 -1.5217 0.0118 8 6 5.2798 -1.9044 -1.4012 9 7 6.3746 -2.6534 -1.6402 10 8 4.5823 -1.5385 -2.3235 11 6 2.3863 -1.1741 -0.0007 12 6 1.9749 -2.5881 -0.0006 13 8 1.8047 -3.1720 -1.0538 14 7 1.7869 -3.2351 1.1668 15 6 1.9978 -2.5334 2.4353 16 6 0.6879 -1.8804 2.8809 17 8 -0.2774 -2.8949 3.1658 18 6 1.3771 -4.6416 1.1669 19 6 2.6194 -5.5348 1.1663 20 7 2.2095 -6.9413 1.1670 21 6 3.1565 -7.9303 1.1662 22 1 4.2055 -7.6736 1.1654 23 6 2.7682 -9.2631 1.1674 24 7 1.4898 -9.5760 1.1688 25 14 4.0600 -10.6124 1.1655 26 1 4.4049 -10.9693 2.5651 27 1 3.5254 -11.8086 0.4669 28 1 5.2769 -10.1316 0.4632 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5143 32 1 1.9869 2.1059 0.0004 33 1 5.7373 -0.9446 0.4490 34 1 4.7584 -2.4233 0.6020 35 1 6.9327 -2.9457 -0.9027 36 1 6.6044 -2.9001 -2.5498 37 1 2.3256 -3.2444 3.1937 38 1 2.7601 -1.7656 2.3036 39 1 0.8648 -1.2853 3.7767 40 1 0.3139 -1.2364 2.0849 41 1 -1.1344 -2.5524 3.4545 42 1 0.7826 -4.8467 2.0571 43 1 0.7817 -4.8467 0.2772 44 1 3.2139 -5.3296 0.2761 45 1 3.2147 -5.3297 2.0560 46 1 1.2673 -7.1719 1.1673 47 1 1.2184 -10.5073 1.1701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672681582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:47 Heat of formation + Delta-G solvation = -61.277848 kcal Electronic energy + Delta-G solvation = -30741.696276 eV Core-core repulsion = 26539.847945 eV Total energy + Delta-G solvation = -4201.848330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55913 -39.28439 -39.12524 -36.97476 -35.35940 -34.14300 -33.77582 -32.98674 -31.93080 -31.18620 -29.29990 -28.68532 -27.02960 -26.08880 -23.93646 -23.11812 -22.05057 -21.28732 -20.63324 -19.54025 -18.42780 -17.99928 -17.52472 -17.13614 -17.04477 -16.71987 -16.22788 -15.96182 -15.17189 -14.85067 -14.61140 -14.42541 -14.28188 -13.72551 -13.67911 -13.54551 -13.39676 -13.31910 -13.06798 -12.91787 -12.80941 -12.58043 -12.50088 -12.28439 -12.17256 -11.45418 -11.31178 -11.07371 -10.85148 -10.80412 -10.50145 -10.11130 -10.05775 -9.97948 -9.76248 -9.68679 -9.50376 -8.77985 -8.56924 -8.29061 -8.20767 -6.82362 -5.66979 -2.95474 1.93702 2.48764 2.55351 2.90980 3.01809 3.43122 3.48854 3.52514 3.53655 3.55872 4.25616 4.33128 4.63156 4.68721 4.81719 4.86992 4.96289 5.12142 5.13928 5.16745 5.28519 5.29766 5.41661 5.50945 5.64534 5.65135 5.79249 5.83208 5.92416 6.00683 6.11303 6.12060 6.22030 6.38597 6.67241 6.68118 6.77042 6.85625 6.92086 7.11415 7.17621 7.35093 7.61468 7.76790 7.80425 8.17578 8.51270 8.60837 9.62135 10.20874 10.56128 11.56111 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.003652 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.646443 B = 7664.420102 C = 9433.899486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.135 4.135 3 C -0.007 4.007 4 N -0.546 5.546 5 H 0.413 0.587 6 C 0.077 3.923 7 C -0.082 4.082 8 C 0.515 3.485 9 N -0.856 5.856 10 O -0.519 6.519 11 C -0.182 4.182 12 C 0.583 3.417 13 O -0.520 6.520 14 N -0.595 5.595 15 C 0.115 3.885 16 C 0.052 3.948 17 O -0.563 6.563 18 C 0.112 3.888 19 C 0.144 3.856 20 N -0.729 5.729 21 C -0.235 4.235 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.168 0.832 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.401 0.599 36 H 0.403 0.597 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.374 0.626 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.018 0.982 45 H 0.015 0.985 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 27.533 4.323 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.142 4.142 3 C -0.136 4.136 4 N -0.140 5.140 5 H 0.249 0.751 6 C -0.038 4.038 7 C -0.123 4.123 8 C 0.298 3.702 9 N -0.421 5.421 10 O -0.393 6.393 11 C -0.192 4.192 12 C 0.369 3.631 13 O -0.395 6.395 14 N -0.328 5.328 15 C -0.009 4.009 16 C -0.027 4.027 17 O -0.367 6.367 18 C -0.011 4.011 19 C 0.016 3.984 20 N -0.374 5.374 21 C -0.367 4.367 22 H 0.086 0.914 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.185 0.815 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.229 0.771 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.220 0.780 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.363 27.157 3.084 27.853 hybrid contribution 0.776 -0.437 0.230 0.920 sum 6.139 26.720 3.314 27.616 Atomic orbital electron populations 1.20211 0.89834 1.02609 1.01338 1.20359 0.95023 0.90400 1.08425 1.21406 0.82174 0.98868 1.11160 1.41208 1.08153 1.05652 1.59009 0.75089 1.19111 0.93930 0.83156 1.07632 1.20241 0.94872 1.01079 0.96076 1.20348 0.80436 0.78283 0.91099 1.43798 1.28879 1.56428 1.12950 1.90827 1.49379 1.53385 1.45695 1.20026 0.92239 0.92785 1.14177 1.17587 0.77075 0.84953 0.83468 1.90847 1.49788 1.67851 1.31009 1.47783 1.68033 1.11988 1.04962 1.21551 0.95562 0.97400 0.86422 1.22845 0.90450 0.90516 0.98848 1.86592 1.25223 1.34865 1.90056 1.21684 0.97670 0.78039 1.03670 1.20903 0.94472 0.85554 0.97505 1.42209 1.06729 0.98965 1.89461 1.19191 0.88792 0.86192 1.42475 0.91350 1.24738 0.96040 0.97082 1.03207 1.69667 1.13516 1.17091 1.57848 0.86183 0.80584 0.81989 0.77391 1.21793 1.21773 1.20866 0.91838 0.91772 0.91615 0.81484 0.87758 0.86415 0.77081 0.76574 0.89534 0.89385 0.93412 0.92508 0.77953 0.89516 0.90212 0.96402 0.96740 0.78201 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.64 36.01 0.35 -0.50 16 2 C -0.14 -1.58 5.91 -102.54 -0.61 -2.19 16 3 C -0.01 -0.06 11.82 -16.82 -0.20 -0.26 16 4 N -0.55 -4.57 5.90 -9.11 -0.05 -4.62 16 5 H 0.41 2.03 8.96 -40.82 -0.37 1.66 16 6 C 0.08 0.88 5.31 -81.88 -0.43 0.45 16 7 C -0.08 -0.78 6.01 -29.04 -0.17 -0.96 16 8 C 0.52 6.54 8.09 -10.99 -0.09 6.45 16 9 N -0.86 -7.73 8.87 31.22 0.28 -7.45 16 10 O -0.52 -9.31 16.87 5.56 0.09 -9.22 16 11 C -0.18 -2.59 4.31 -103.35 -0.44 -3.03 16 12 C 0.58 10.41 7.16 -12.59 -0.09 10.32 16 13 O -0.52 -12.06 16.69 5.26 0.09 -11.97 16 14 N -0.59 -9.57 2.44 -175.02 -0.43 -9.99 16 15 C 0.11 1.37 5.63 -4.05 -0.02 1.35 16 16 C 0.05 0.53 7.39 37.16 0.27 0.81 16 17 O -0.56 -6.67 12.50 -35.23 -0.44 -7.11 16 18 C 0.11 2.18 5.34 -4.04 -0.02 2.16 16 19 C 0.14 3.24 6.58 -4.04 -0.03 3.21 16 20 N -0.73 -19.93 5.60 -59.91 -0.34 -20.27 16 21 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -29.31 13.06 55.49 0.72 -28.59 16 25 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 H 0.06 0.54 6.28 -51.93 -0.33 0.21 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.12 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.40 2.30 8.83 -40.82 -0.36 1.93 16 36 H 0.40 3.52 8.93 -40.82 -0.36 3.16 16 37 H 0.09 1.06 8.07 -51.93 -0.42 0.64 16 38 H 0.09 0.88 6.61 -51.93 -0.34 0.53 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.58 4.75 -51.93 -0.25 0.33 16 41 H 0.37 2.74 9.12 45.56 0.42 3.15 16 42 H 0.09 1.67 7.13 -51.93 -0.37 1.30 16 43 H 0.08 1.75 7.42 -51.93 -0.39 1.37 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.38 11.02 7.67 -40.82 -0.31 10.71 16 47 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -43.06 396.36 -6.86 -49.92 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -6.00 Total: 15.08 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -1.73 Total: 10.20 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: 0.19 Total: -70.92 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.26 Total: -28.30 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -43.06 -6.86 -49.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672681582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.354 kcal (2) G-P(sol) polarization free energy of solvation -43.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds