Wall clock time and date at job start Tue Mar 31 2020 22:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47270 * 2 1 4 4 O 1.33501 * 126.82523 * 269.99594 * 3 2 1 5 5 N 1.20658 * 113.15104 * 179.97438 * 4 3 2 6 6 C 1.30009 * 112.30524 * 359.73824 * 5 4 3 7 7 C 1.37352 * 126.83212 * 89.99835 * 3 2 1 8 8 C 1.47396 * 128.56658 * 359.96622 * 7 3 2 9 9 O 1.21612 * 119.99991 * 359.97438 * 8 7 3 10 10 N 1.34778 * 120.00317 * 179.97438 * 8 7 3 11 11 C 1.46496 * 119.99890 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47729 * 35.00176 * 11 10 8 13 13 C 1.52999 * 109.47217 * 274.99894 * 11 10 8 14 14 C 1.53006 * 109.47070 * 155.00248 * 11 10 8 15 15 H 1.08998 * 109.46505 * 294.99577 * 14 11 10 16 16 C 1.52997 * 109.47127 * 54.99706 * 14 11 10 17 17 N 1.46894 * 109.47224 * 175.00252 * 14 11 10 18 18 C 1.46899 * 111.00313 * 154.99921 * 17 14 11 19 19 C 1.50699 * 109.47386 * 179.97438 * 18 17 14 20 20 O 1.21291 * 119.99890 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00215 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00291 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99982 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00170 * 179.97438 * 22 21 19 25 25 N 1.31415 * 120.00092 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00086 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46933 * 60.00219 * 26 24 22 28 28 H 1.48497 * 109.47101 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47193 * 300.00385 * 26 24 22 30 30 H 1.09001 * 109.47287 * 60.00210 * 1 2 3 31 31 H 1.08995 * 109.47470 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47088 * 300.00602 * 1 2 3 33 33 H 1.09002 * 109.47030 * 239.99936 * 2 1 3 34 34 H 1.09001 * 109.47287 * 119.99790 * 2 1 3 35 35 H 1.08006 * 127.33442 * 180.27362 * 6 5 4 36 36 H 0.97001 * 119.99750 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47273 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.47609 * 300.00295 * 13 11 10 39 39 H 1.09002 * 109.46911 * 60.00276 * 13 11 10 40 40 H 1.09002 * 109.47153 * 180.02562 * 16 14 11 41 41 H 1.09001 * 109.46832 * 60.00321 * 16 14 11 42 42 H 1.09004 * 109.47261 * 300.00303 * 16 14 11 43 43 H 1.00906 * 111.00118 * 278.95263 * 17 14 11 44 44 H 1.09003 * 109.46741 * 300.00007 * 18 17 14 45 45 H 1.09003 * 109.47153 * 59.99606 * 18 17 14 46 46 H 0.97001 * 119.99616 * 359.97438 * 21 19 18 47 47 H 0.96996 * 120.00008 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2991 2.1752 -1.0686 5 7 2.6895 3.2807 -0.7834 6 6 2.7489 3.4666 0.5020 7 6 2.3068 2.1971 1.0994 8 6 2.1822 1.8470 2.5257 9 8 1.7903 0.7420 2.8486 10 7 2.5027 2.7515 3.4721 11 6 2.3783 2.4037 4.8898 12 1 2.6306 1.3525 5.0295 13 6 0.9402 2.6486 5.3508 14 6 3.3326 3.2710 5.7133 15 1 4.3621 3.0319 5.4470 16 6 3.0599 4.7479 5.4213 17 7 3.1230 3.0077 7.1432 18 6 4.3312 3.3190 7.9185 19 6 4.0785 3.0376 9.3773 20 8 2.9979 2.6194 9.7359 21 7 5.0528 3.2517 10.2836 22 6 4.8227 2.9963 11.6107 23 1 3.8605 2.6239 11.9301 24 6 5.8273 3.2165 12.5450 25 7 6.9982 3.6691 12.1565 26 14 5.5135 2.8691 14.3534 27 1 5.1679 1.4356 14.5294 28 1 6.7352 3.1830 15.1370 29 1 4.3881 3.7118 14.8314 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.0591 4.3617 1.0207 36 1 2.8157 3.6328 3.2146 37 1 0.8477 2.3902 6.4057 38 1 0.6878 3.6997 5.2111 39 1 0.2604 2.0307 4.7641 40 1 3.7400 5.3658 6.0077 41 1 2.0303 4.9868 5.6877 42 1 3.2155 4.9432 4.3603 43 1 2.3272 3.5204 7.4925 44 1 5.1577 2.7014 7.5669 45 1 4.5841 4.3715 7.7903 46 1 5.9168 3.5865 9.9968 47 1 7.6994 3.8232 12.8087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674734539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:02 Heat of formation + Delta-G solvation = -41.891471 kcal Electronic energy + Delta-G solvation = -28807.695970 eV Core-core repulsion = 24606.688296 eV Total energy + Delta-G solvation = -4201.007674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.96324 -41.00505 -40.15049 -38.57701 -36.08821 -35.71027 -35.35880 -34.66726 -33.26436 -32.16162 -31.14125 -30.01688 -27.98315 -26.45803 -25.96127 -24.98462 -24.76830 -22.69684 -21.48098 -21.14542 -20.70374 -19.92131 -19.18501 -18.76142 -17.86048 -17.40165 -17.09651 -16.87111 -16.40145 -16.15856 -16.03274 -15.77928 -15.55189 -15.43424 -15.09509 -14.80181 -14.69073 -14.45666 -14.09911 -13.85896 -13.55457 -13.48897 -13.31958 -13.15783 -13.05042 -12.89141 -12.82298 -12.55156 -12.48282 -12.42127 -12.12294 -11.89590 -11.86143 -11.80892 -11.48989 -11.48449 -11.17738 -10.57855 -10.34864 -10.10059 -10.00238 -9.29590 -8.45667 -5.94092 -0.00259 0.76197 1.40388 1.42425 1.53014 1.67372 2.07264 2.09674 2.13755 2.30870 2.99001 3.21800 3.23006 3.27233 3.54427 3.56385 3.78355 3.90457 3.99836 4.16924 4.24053 4.25634 4.31176 4.37224 4.47242 4.48192 4.56249 4.64133 4.72256 4.75119 4.81741 4.87402 4.97266 4.98299 5.03563 5.11146 5.23567 5.29057 5.41846 5.43311 5.47944 5.90045 6.10889 6.42308 6.46252 6.61544 7.09930 7.13952 7.15007 7.58061 8.13499 8.71355 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.001791 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.805438 B =15632.451580 C =16045.606256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C 0.059 3.941 4 O 0.083 5.917 5 N -0.377 5.377 6 C 0.038 3.962 7 C -0.282 4.282 8 C 0.598 3.402 9 O -0.563 6.563 10 N -0.700 5.700 11 C 0.163 3.837 12 H 0.069 0.931 13 C -0.156 4.156 14 C 0.083 3.917 15 H 0.091 0.909 16 C -0.186 4.186 17 N -0.675 5.675 18 C 0.068 3.932 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.235 0.765 36 H 0.412 0.588 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.349 0.651 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 1.388 -27.018 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.006 4.006 4 O 0.027 5.973 5 N -0.085 5.085 6 C -0.145 4.145 7 C -0.290 4.290 8 C 0.385 3.615 9 O -0.443 6.443 10 N -0.354 5.354 11 C 0.058 3.942 12 H 0.088 0.912 13 C -0.215 4.215 14 C -0.027 4.027 15 H 0.109 0.891 16 C -0.244 4.244 17 N -0.308 5.308 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.251 0.749 36 H 0.251 0.749 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.169 0.831 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.365 0.452 -27.560 28.531 hybrid contribution 0.506 1.121 1.698 2.097 sum -6.859 1.573 -25.862 26.802 Atomic orbital electron populations 1.21685 0.92296 1.03943 1.01965 1.20502 0.97591 0.84587 1.06225 1.25323 0.93638 0.96612 0.85028 1.84584 1.61544 1.17688 1.33460 1.73661 1.17527 0.98852 1.18454 1.26899 0.99049 0.99497 0.89006 1.22060 1.15774 0.96424 0.94694 1.16944 0.76783 0.84058 0.83674 1.90803 1.47920 1.22899 1.82676 1.45764 1.67186 1.17023 1.05393 1.20673 0.95637 0.99389 0.78496 0.91242 1.22094 0.95490 1.02219 1.01671 1.21716 0.99543 0.94393 0.87081 0.89089 1.22579 1.02935 0.95403 1.03507 1.59946 1.05277 1.63949 1.01603 1.21541 0.94529 1.01174 0.89220 1.20928 0.84765 0.82894 0.88974 1.90498 1.26763 1.51652 1.82027 1.41924 1.14218 1.58455 1.06488 1.19618 1.00039 1.43040 0.83607 0.90357 1.26023 0.94514 0.96444 1.04342 1.69661 1.04025 1.45360 1.37030 0.85005 0.77845 0.78748 0.76843 1.19882 1.19536 1.19649 0.91450 0.89473 0.93815 0.86658 0.88035 0.74903 0.74903 0.91711 0.90886 0.93609 0.91940 0.91502 0.89567 0.83073 0.87947 0.91001 0.76951 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.89 71.98 0.71 -0.96 16 2 C -0.05 -0.65 6.05 29.85 0.18 -0.47 16 3 C 0.06 0.95 6.80 25.48 0.17 1.12 16 4 O 0.08 1.42 11.06 76.92 0.85 2.27 16 5 N -0.38 -6.54 12.01 -54.19 -0.65 -7.19 16 6 C 0.04 0.50 11.95 87.29 1.04 1.54 16 7 C -0.28 -4.75 6.47 -18.75 -0.12 -4.87 16 8 C 0.60 12.20 7.78 86.65 0.67 12.88 16 9 O -0.56 -15.46 14.90 -4.07 -0.06 -15.52 16 10 N -0.70 -11.12 4.99 -445.82 -2.22 -13.34 16 11 C 0.16 3.40 2.63 44.99 0.12 3.52 16 12 H 0.07 1.90 7.58 -2.39 -0.02 1.89 16 13 C -0.16 -3.38 8.86 71.98 0.64 -2.75 16 14 C 0.08 1.62 2.64 44.92 0.12 1.73 16 15 H 0.09 1.67 7.80 -2.39 -0.02 1.65 16 16 C -0.19 -2.53 8.68 71.98 0.62 -1.90 16 17 N -0.67 -19.23 5.23 -495.58 -2.59 -21.82 16 18 C 0.07 2.14 5.97 85.56 0.51 2.65 16 19 C 0.44 20.20 7.82 87.66 0.69 20.88 16 20 O -0.62 -33.90 15.78 -3.06 -0.05 -33.94 16 21 N -0.57 -28.89 5.29 -306.99 -1.62 -30.51 16 22 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 26 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 1.65 6.78 -2.39 -0.02 1.63 16 35 H 0.23 1.00 7.88 -2.91 -0.02 0.98 16 36 H 0.41 3.81 5.94 -92.71 -0.55 3.26 16 37 H 0.06 1.66 7.13 -2.39 -0.02 1.64 16 38 H 0.07 1.27 6.57 -2.39 -0.02 1.25 16 39 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 0.92 7.45 -2.39 -0.02 0.90 16 41 H 0.07 0.94 6.55 -2.39 -0.02 0.93 16 42 H 0.09 0.65 6.29 -2.38 -0.02 0.63 16 43 H 0.35 10.46 7.39 -89.69 -0.66 9.80 16 44 H 0.10 2.96 8.06 -2.39 -0.02 2.94 16 45 H 0.07 1.92 7.44 -2.39 -0.02 1.90 16 46 H 0.40 18.88 7.90 -92.71 -0.73 18.14 16 47 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -73.46 390.82 1.70 -71.76 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: -0.91 Total: 37.27 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 6.64 Total: 15.16 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.81 Total: -121.77 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: 0.74 Total: -47.19 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.46 1.70 -71.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674734539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.870 kcal (2) G-P(sol) polarization free energy of solvation -73.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds