Wall clock time and date at job start Tue Mar 31 2020 22:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.33491 * 126.83208 * 270.03130 * 3 2 1 5 5 N 1.20651 * 113.15840 * 179.97438 * 4 3 2 6 6 C 1.30016 * 112.30305 * 359.97438 * 5 4 3 7 7 C 1.37358 * 126.82454 * 89.70679 * 3 2 1 8 8 C 1.47395 * 128.56703 * 0.03115 * 7 3 2 9 9 O 1.21611 * 120.00071 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00006 * 179.97438 * 8 7 3 11 11 C 1.46503 * 120.00121 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47052 * 325.00277 * 11 10 8 13 13 C 1.53003 * 109.46985 * 85.00305 * 11 10 8 14 14 C 1.53001 * 109.47159 * 205.00411 * 11 10 8 15 15 H 1.08999 * 109.47145 * 65.00210 * 14 11 10 16 16 C 1.53000 * 109.47060 * 305.00165 * 14 11 10 17 17 N 1.46898 * 109.46747 * 185.00269 * 14 11 10 18 18 C 1.46910 * 110.99850 * 204.99694 * 17 14 11 19 19 C 1.50697 * 109.47279 * 179.97438 * 18 17 14 20 20 O 1.21297 * 119.99888 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00326 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00223 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99929 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99903 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00044 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00093 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47003 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46881 * 120.00132 * 26 24 22 29 29 H 1.48493 * 109.47454 * 240.00316 * 26 24 22 30 30 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 35 35 H 1.07999 * 127.33526 * 180.02562 * 6 5 4 36 36 H 0.97005 * 120.00101 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46787 * 59.99960 * 13 11 10 38 38 H 1.08995 * 109.47345 * 180.02562 * 13 11 10 39 39 H 1.08998 * 109.47012 * 300.00574 * 13 11 10 40 40 H 1.09008 * 109.47189 * 299.99869 * 16 14 11 41 41 H 1.08995 * 109.47286 * 59.99927 * 16 14 11 42 42 H 1.09005 * 109.47042 * 180.02562 * 16 14 11 43 43 H 1.00904 * 111.00065 * 81.04887 * 17 14 11 44 44 H 1.09001 * 109.47104 * 300.00226 * 18 17 14 45 45 H 1.09001 * 109.46487 * 60.00089 * 18 17 14 46 46 H 0.97004 * 119.99647 * 0.02562 * 21 19 18 47 47 H 0.97005 * 119.99722 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2986 2.1755 -1.0685 5 7 2.6890 3.2809 -0.7832 6 6 2.7538 3.4649 0.5022 7 6 2.3015 2.1989 1.0995 8 6 2.1713 1.8507 2.5258 9 8 1.7790 0.7457 2.8486 10 7 2.4870 2.7568 3.4723 11 6 2.3570 2.4108 4.8899 12 1 1.4983 1.7534 5.0262 13 6 3.6260 1.6963 5.3589 14 6 2.1575 3.6869 5.7101 15 1 1.2086 4.1491 5.4379 16 6 3.3009 4.6621 5.4224 17 7 2.1471 3.3529 7.1405 18 6 1.4004 4.3571 7.9102 19 6 1.4109 3.9813 9.3695 20 8 1.9844 2.9761 9.7328 21 7 0.7839 4.7626 10.2711 22 6 0.7930 4.4205 11.5987 23 1 1.3030 3.5251 11.9221 24 6 0.1471 5.2263 12.5282 25 7 -0.4730 6.3160 12.1348 26 14 0.1601 4.7605 14.3372 27 1 0.9213 3.4983 14.5179 28 1 0.8048 5.8436 15.1225 29 1 -1.2348 4.5698 14.8093 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.0689 4.3582 1.0209 36 1 2.7995 3.6383 3.2148 37 1 4.4846 2.3538 5.2225 38 1 3.5292 1.4385 6.4135 39 1 3.7682 0.7872 4.7745 40 1 4.2498 4.1998 5.6945 41 1 3.3087 4.9098 4.3610 42 1 3.1590 5.5710 6.0070 43 1 3.0863 3.2508 7.4949 44 1 1.8674 5.3337 7.7827 45 1 0.3713 4.3970 7.5530 46 1 0.3256 5.5667 9.9806 47 1 -0.9242 6.8784 12.7837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674734540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:06 Heat of formation + Delta-G solvation = -17.455021 kcal Electronic energy + Delta-G solvation = -28814.852677 eV Core-core repulsion = 24614.904647 eV Total energy + Delta-G solvation = -4199.948030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.31893 -40.12516 -38.52155 -37.41332 -35.13131 -34.57041 -34.06460 -33.75304 -31.40089 -31.10171 -30.40713 -29.14913 -26.45919 -25.69082 -24.53495 -24.39406 -23.66817 -21.98390 -20.72025 -19.85348 -19.34633 -18.43735 -18.09855 -17.92736 -16.92692 -16.20553 -15.99924 -15.63441 -15.29523 -15.08471 -14.88595 -14.59337 -14.55313 -14.15901 -13.91508 -13.89945 -13.79575 -13.32680 -13.06505 -12.97943 -12.41178 -12.29498 -12.27135 -12.21316 -11.93548 -11.93327 -11.57282 -11.45208 -11.32372 -11.08823 -11.02248 -10.91278 -10.81811 -10.35586 -10.29707 -10.24020 -9.86895 -9.53889 -9.29820 -8.50921 -8.12107 -7.98158 -6.43741 -3.84478 0.68791 1.38407 2.36258 2.87495 2.92284 3.15163 3.26019 3.33311 3.78799 3.87457 3.88259 4.08179 4.20084 4.30967 4.53698 4.66465 4.72328 4.76913 4.80189 4.94148 5.03801 5.14503 5.22965 5.23864 5.30027 5.31960 5.39184 5.45986 5.56063 5.62160 5.64506 5.72065 5.80565 5.82061 5.90743 5.95152 6.03584 6.22787 6.29678 6.37195 7.09750 7.21522 7.53800 7.57582 7.74407 7.91706 8.04471 8.58912 9.16100 9.52099 10.03234 10.74013 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.001801 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.830501 B =15543.235711 C =15808.171237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C 0.054 3.946 4 O 0.092 5.908 5 N -0.354 5.354 6 C 0.021 3.979 7 C -0.264 4.264 8 C 0.598 3.402 9 O -0.528 6.528 10 N -0.716 5.716 11 C 0.155 3.845 12 H 0.099 0.901 13 C -0.163 4.163 14 C 0.077 3.923 15 H 0.083 0.917 16 C -0.190 4.190 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.200 0.800 36 H 0.396 0.604 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -4.485 -25.741 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.010 4.010 4 O 0.032 5.968 5 N -0.059 5.059 6 C -0.162 4.162 7 C -0.272 4.272 8 C 0.384 3.616 9 O -0.405 6.405 10 N -0.369 5.369 11 C 0.051 3.949 12 H 0.117 0.883 13 C -0.222 4.222 14 C -0.034 4.034 15 H 0.101 0.899 16 C -0.249 4.249 17 N -0.290 5.290 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.216 0.784 36 H 0.232 0.768 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.174 0.826 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.014 -5.503 -26.238 27.274 hybrid contribution 0.429 1.679 1.368 2.208 sum 5.442 -3.824 -24.870 25.744 Atomic orbital electron populations 1.21717 0.92673 1.03256 1.02685 1.20427 0.97369 0.85337 1.05692 1.24977 0.94759 0.96147 0.85095 1.84586 1.61256 1.17538 1.33408 1.73667 1.16190 0.98545 1.17517 1.26375 1.00914 0.99228 0.89653 1.22138 1.14204 0.95310 0.95507 1.16743 0.77301 0.84587 0.82933 1.90814 1.46338 1.21268 1.82079 1.46002 1.67712 1.16561 1.06577 1.20942 1.00198 0.96415 0.77355 0.88263 1.22182 0.96568 1.00277 1.03139 1.21724 0.98662 0.93283 0.89724 0.89870 1.22629 1.00128 1.00637 1.01472 1.60020 1.22034 1.47305 0.99677 1.21710 0.99437 0.93166 0.93828 1.19786 0.84856 0.86151 0.86637 1.90531 1.48234 1.27448 1.80433 1.41868 1.47488 1.23708 1.06966 1.19754 1.31980 1.09283 0.81775 0.87831 1.25269 0.96550 0.95540 1.00656 1.69619 1.35116 1.14011 1.35570 0.85797 0.77998 0.78650 0.81889 1.19192 1.20793 1.20732 0.91653 0.92356 0.90790 0.89146 0.86630 0.78360 0.76784 0.92839 0.89835 0.92478 0.91529 0.92633 0.91848 0.82599 0.93733 0.89536 0.77482 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.05 -0.34 6.05 -27.88 -0.17 -0.50 16 3 C 0.05 0.47 6.80 -34.63 -0.24 0.23 16 4 O 0.09 0.84 11.06 18.66 0.21 1.04 16 5 N -0.35 -3.38 12.01 31.81 0.38 -3.00 16 6 C 0.02 0.16 11.95 -14.72 -0.18 -0.01 16 7 C -0.26 -2.40 6.47 -102.89 -0.67 -3.06 16 8 C 0.60 6.33 7.78 -12.53 -0.10 6.24 16 9 O -0.53 -7.11 14.91 5.27 0.08 -7.03 16 10 N -0.72 -6.33 4.99 -54.89 -0.27 -6.61 16 11 C 0.16 1.68 2.63 -67.93 -0.18 1.50 16 12 H 0.10 1.33 7.58 -51.93 -0.39 0.94 16 13 C -0.16 -1.80 8.86 37.16 0.33 -1.47 16 14 C 0.08 0.83 2.64 -67.71 -0.18 0.65 16 15 H 0.08 0.88 7.80 -51.93 -0.40 0.47 16 16 C -0.19 -1.61 8.68 37.16 0.32 -1.29 16 17 N -0.66 -9.66 5.23 -107.99 -0.56 -10.22 16 18 C 0.05 0.85 5.97 -4.97 -0.03 0.82 16 19 C 0.44 10.10 7.82 -10.99 -0.09 10.01 16 20 O -0.58 -15.45 15.78 5.54 0.09 -15.37 16 21 N -0.56 -14.02 5.29 -10.97 -0.06 -14.08 16 22 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 26 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.12 0.91 6.79 -51.93 -0.35 0.56 16 35 H 0.20 0.83 7.88 -52.49 -0.41 0.42 16 36 H 0.40 2.50 5.94 -40.82 -0.24 2.26 16 37 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16 38 H 0.08 1.05 7.13 -51.93 -0.37 0.67 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.57 6.55 -51.92 -0.34 0.23 16 41 H 0.05 0.34 6.29 -51.93 -0.33 0.01 16 42 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 43 H 0.35 5.37 7.39 -39.29 -0.29 5.08 16 44 H 0.04 0.65 7.44 -51.93 -0.39 0.27 16 45 H 0.09 1.33 8.06 -51.93 -0.42 0.92 16 46 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -32.97 390.84 -6.20 -39.17 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -6.61 Total: 13.26 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.04 Total: 4.64 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.21 Total: -57.50 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.37 Total: -21.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.97 -6.20 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674734540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.716 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds