Wall clock time and date at job start Tue Mar 31 2020 22:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.33491 * 126.83208 * 270.03130 * 3 2 1 5 5 N 1.20651 * 113.15840 * 179.97438 * 4 3 2 6 6 C 1.30016 * 112.30305 * 359.97438 * 5 4 3 7 7 C 1.37358 * 126.82454 * 89.70679 * 3 2 1 8 8 C 1.47395 * 128.56703 * 0.03115 * 7 3 2 9 9 O 1.21611 * 120.00071 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00006 * 179.97438 * 8 7 3 11 11 C 1.46503 * 120.00121 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47052 * 325.00277 * 11 10 8 13 13 C 1.53003 * 109.46985 * 85.00305 * 11 10 8 14 14 C 1.53001 * 109.47159 * 205.00411 * 11 10 8 15 15 H 1.08999 * 109.47145 * 65.00210 * 14 11 10 16 16 C 1.53000 * 109.47060 * 305.00165 * 14 11 10 17 17 N 1.46898 * 109.46747 * 185.00269 * 14 11 10 18 18 C 1.46910 * 110.99850 * 204.99694 * 17 14 11 19 19 C 1.50697 * 109.47279 * 179.97438 * 18 17 14 20 20 O 1.21297 * 119.99888 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00326 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00223 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99929 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99903 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00044 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00093 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47003 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46881 * 120.00132 * 26 24 22 29 29 H 1.48493 * 109.47454 * 240.00316 * 26 24 22 30 30 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 35 35 H 1.07999 * 127.33526 * 180.02562 * 6 5 4 36 36 H 0.97005 * 120.00101 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46787 * 59.99960 * 13 11 10 38 38 H 1.08995 * 109.47345 * 180.02562 * 13 11 10 39 39 H 1.08998 * 109.47012 * 300.00574 * 13 11 10 40 40 H 1.09008 * 109.47189 * 299.99869 * 16 14 11 41 41 H 1.08995 * 109.47286 * 59.99927 * 16 14 11 42 42 H 1.09005 * 109.47042 * 180.02562 * 16 14 11 43 43 H 1.00904 * 111.00065 * 81.04887 * 17 14 11 44 44 H 1.09001 * 109.47104 * 300.00226 * 18 17 14 45 45 H 1.09001 * 109.46487 * 60.00089 * 18 17 14 46 46 H 0.97004 * 119.99647 * 0.02562 * 21 19 18 47 47 H 0.97005 * 119.99722 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2986 2.1755 -1.0685 5 7 2.6890 3.2809 -0.7832 6 6 2.7538 3.4649 0.5022 7 6 2.3015 2.1989 1.0995 8 6 2.1713 1.8507 2.5258 9 8 1.7790 0.7457 2.8486 10 7 2.4870 2.7568 3.4723 11 6 2.3570 2.4108 4.8899 12 1 1.4983 1.7534 5.0262 13 6 3.6260 1.6963 5.3589 14 6 2.1575 3.6869 5.7101 15 1 1.2086 4.1491 5.4379 16 6 3.3009 4.6621 5.4224 17 7 2.1471 3.3529 7.1405 18 6 1.4004 4.3571 7.9102 19 6 1.4109 3.9813 9.3695 20 8 1.9844 2.9761 9.7328 21 7 0.7839 4.7626 10.2711 22 6 0.7930 4.4205 11.5987 23 1 1.3030 3.5251 11.9221 24 6 0.1471 5.2263 12.5282 25 7 -0.4730 6.3160 12.1348 26 14 0.1601 4.7605 14.3372 27 1 0.9213 3.4983 14.5179 28 1 0.8048 5.8436 15.1225 29 1 -1.2348 4.5698 14.8093 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.0689 4.3582 1.0209 36 1 2.7995 3.6383 3.2148 37 1 4.4846 2.3538 5.2225 38 1 3.5292 1.4385 6.4135 39 1 3.7682 0.7872 4.7745 40 1 4.2498 4.1998 5.6945 41 1 3.3087 4.9098 4.3610 42 1 3.1590 5.5710 6.0070 43 1 3.0863 3.2508 7.4949 44 1 1.8674 5.3337 7.7827 45 1 0.3713 4.3970 7.5530 46 1 0.3256 5.5667 9.9806 47 1 -0.9242 6.8784 12.7837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674734540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:05 Heat of formation + Delta-G solvation = -42.047837 kcal Electronic energy + Delta-G solvation = -28815.919102 eV Core-core repulsion = 24614.904647 eV Total energy + Delta-G solvation = -4201.014455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.96481 -41.00460 -40.15240 -38.57730 -36.09088 -35.71102 -35.35865 -34.66658 -33.26738 -32.16102 -31.14093 -30.01760 -27.98650 -26.45498 -25.96548 -24.98128 -24.77586 -22.69538 -21.48194 -21.14838 -20.70258 -19.92485 -19.18525 -18.76148 -17.86300 -17.40409 -17.10288 -16.87172 -16.40448 -16.14486 -16.06010 -15.75086 -15.53858 -15.44197 -15.08948 -14.83846 -14.69187 -14.44263 -14.10061 -13.86160 -13.55301 -13.50437 -13.32375 -13.15570 -13.05688 -12.89800 -12.81836 -12.55237 -12.48379 -12.39600 -12.11464 -11.89040 -11.85899 -11.82253 -11.50479 -11.48463 -11.17340 -10.57623 -10.34984 -10.10348 -10.00308 -9.29674 -8.46325 -5.94543 -0.00241 0.76197 1.36853 1.42353 1.56242 1.67383 2.06844 2.09709 2.13746 2.30586 2.98835 3.21334 3.23000 3.27273 3.54472 3.56229 3.78388 3.90380 3.99915 4.16946 4.24038 4.25545 4.31070 4.37156 4.47291 4.48071 4.56275 4.64043 4.72211 4.75159 4.81786 4.87410 4.97118 4.98246 5.03654 5.11069 5.23593 5.29327 5.42097 5.43410 5.47948 5.89982 6.10853 6.42265 6.46284 6.61190 7.09994 7.13891 7.15043 7.57839 8.13249 8.71207 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.001801 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.830501 B =15543.235711 C =15808.171237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C 0.058 3.942 4 O 0.084 5.916 5 N -0.377 5.377 6 C 0.038 3.962 7 C -0.282 4.282 8 C 0.598 3.402 9 O -0.563 6.563 10 N -0.700 5.700 11 C 0.163 3.837 12 H 0.069 0.931 13 C -0.157 4.157 14 C 0.083 3.917 15 H 0.091 0.909 16 C -0.186 4.186 17 N -0.675 5.675 18 C 0.068 3.932 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.235 0.765 36 H 0.412 0.588 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.349 0.651 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.660 -3.087 -27.007 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.006 4.006 4 O 0.027 5.973 5 N -0.085 5.085 6 C -0.145 4.145 7 C -0.289 4.289 8 C 0.385 3.615 9 O -0.443 6.443 10 N -0.354 5.354 11 C 0.058 3.942 12 H 0.087 0.913 13 C -0.215 4.215 14 C -0.027 4.027 15 H 0.109 0.891 16 C -0.244 4.244 17 N -0.308 5.308 18 C -0.065 4.065 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.251 0.749 36 H 0.251 0.749 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.169 0.831 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.380 -4.070 -27.550 28.364 hybrid contribution 0.324 1.197 1.701 2.104 sum 5.704 -2.874 -25.850 26.627 Atomic orbital electron populations 1.21692 0.92399 1.03939 1.01940 1.20498 0.97492 0.84590 1.06249 1.25327 0.93638 0.96622 0.85029 1.84579 1.61585 1.17632 1.33465 1.73663 1.17498 0.98883 1.18450 1.26900 0.99029 0.99523 0.89007 1.22062 1.15710 0.96481 0.94696 1.16942 0.76652 0.84197 0.83671 1.90803 1.47989 1.22822 1.82680 1.45767 1.67161 1.17046 1.05396 1.20673 0.98899 0.96121 0.78496 0.91264 1.22096 0.97453 1.00285 1.01655 1.21716 1.00290 0.93628 0.87099 0.89104 1.22579 0.98747 0.99585 1.03511 1.59952 1.21746 1.47458 1.01617 1.21544 1.01054 0.94624 0.89253 1.20931 0.82722 0.84861 0.89002 1.90502 1.49479 1.29110 1.81840 1.41936 1.48304 1.24308 1.06591 1.19687 1.33446 1.09332 0.83653 0.90379 1.26022 0.95710 0.95289 1.04345 1.69673 1.35105 1.14382 1.36962 0.84885 0.78254 0.78231 0.77062 1.19852 1.19571 1.19736 0.93885 0.91477 0.89466 0.86604 0.87988 0.74906 0.74903 0.90864 0.91715 0.93590 0.91496 0.89564 0.91940 0.83070 0.90976 0.87950 0.76949 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.03 16 2 C -0.05 -0.64 6.05 29.85 0.18 -0.46 16 3 C 0.06 0.94 6.80 25.48 0.17 1.12 16 4 O 0.08 1.42 11.06 77.01 0.85 2.27 16 5 N -0.38 -6.53 12.01 -54.19 -0.65 -7.18 16 6 C 0.04 0.50 11.95 87.29 1.04 1.54 16 7 C -0.28 -4.75 6.47 -18.74 -0.12 -4.87 16 8 C 0.60 12.20 7.78 86.65 0.67 12.87 16 9 O -0.56 -15.45 14.91 -4.07 -0.06 -15.52 16 10 N -0.70 -11.12 4.99 -445.81 -2.22 -13.34 16 11 C 0.16 3.40 2.63 44.99 0.12 3.52 16 12 H 0.07 1.90 7.58 -2.39 -0.02 1.88 16 13 C -0.16 -3.38 8.86 71.98 0.64 -2.74 16 14 C 0.08 1.61 2.64 44.92 0.12 1.73 16 15 H 0.09 1.67 7.80 -2.39 -0.02 1.65 16 16 C -0.19 -2.52 8.68 71.98 0.62 -1.90 16 17 N -0.67 -19.22 5.23 -495.56 -2.59 -21.81 16 18 C 0.07 2.14 5.97 85.55 0.51 2.65 16 19 C 0.44 20.22 7.82 87.66 0.69 20.90 16 20 O -0.62 -33.92 15.78 -3.08 -0.05 -33.97 16 21 N -0.57 -28.91 5.29 -306.99 -1.62 -30.54 16 22 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 25 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 26 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 29 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 1.63 6.79 -2.39 -0.02 1.61 16 35 H 0.23 1.00 7.88 -2.91 -0.02 0.98 16 36 H 0.41 3.81 5.94 -92.70 -0.55 3.25 16 37 H 0.07 1.27 6.56 -2.39 -0.02 1.25 16 38 H 0.06 1.65 7.13 -2.39 -0.02 1.64 16 39 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.07 0.94 6.55 -2.38 -0.02 0.93 16 41 H 0.09 0.65 6.29 -2.39 -0.02 0.63 16 42 H 0.06 0.92 7.45 -2.38 -0.02 0.90 16 43 H 0.35 10.45 7.39 -89.69 -0.66 9.79 16 44 H 0.07 1.92 7.44 -2.39 -0.02 1.91 16 45 H 0.10 2.96 8.06 -2.39 -0.02 2.94 16 46 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 47 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -73.63 390.84 1.70 -71.93 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -0.91 Total: 37.07 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.64 Total: 15.17 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -6.81 Total: -121.79 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: 0.74 Total: -47.21 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -73.63 1.70 -71.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674734540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.887 kcal (2) G-P(sol) polarization free energy of solvation -73.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds