Wall clock time and date at job start Tue Mar 31 2020 22:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.33491 * 126.83208 * 270.03130 * 3 2 1 5 5 N 1.20651 * 113.15967 * 179.97438 * 4 3 2 6 6 C 1.30018 * 112.30184 * 359.97438 * 5 4 3 7 7 C 1.37362 * 126.82334 * 89.71134 * 3 2 1 8 8 C 1.47394 * 128.56757 * 359.96323 * 7 3 2 9 9 O 1.21602 * 120.00242 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99964 * 179.97438 * 8 7 3 11 11 C 1.46499 * 120.00047 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47412 * 325.00413 * 11 10 8 13 13 C 1.53004 * 109.46717 * 85.00461 * 11 10 8 14 14 C 1.52997 * 109.47026 * 204.99970 * 11 10 8 15 15 H 1.09001 * 109.47264 * 299.99968 * 14 11 10 16 16 C 1.52996 * 109.47344 * 60.00401 * 14 11 10 17 17 N 1.46901 * 109.46921 * 180.02562 * 14 11 10 18 18 C 1.46903 * 110.99765 * 155.00022 * 17 14 11 19 19 C 1.50701 * 109.46927 * 179.97438 * 18 17 14 20 20 O 1.21294 * 120.00117 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99853 * 179.97438 * 19 18 17 22 22 C 1.37103 * 119.99893 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99893 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00049 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99886 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00133 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47079 * 89.99626 * 26 24 22 28 28 H 1.48502 * 109.46916 * 209.99782 * 26 24 22 29 29 H 1.48497 * 109.46757 * 329.99679 * 26 24 22 30 30 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 35 35 H 1.08000 * 127.33578 * 180.02562 * 6 5 4 36 36 H 0.97006 * 120.00108 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47219 * 59.99834 * 13 11 10 38 38 H 1.09005 * 109.46937 * 180.02562 * 13 11 10 39 39 H 1.08994 * 109.46789 * 299.99603 * 13 11 10 40 40 H 1.08994 * 109.47684 * 179.97438 * 16 14 11 41 41 H 1.09002 * 109.46901 * 300.00255 * 16 14 11 42 42 H 1.09001 * 109.47294 * 59.99585 * 16 14 11 43 43 H 1.00901 * 111.00196 * 278.95464 * 17 14 11 44 44 H 1.08998 * 109.47705 * 299.99982 * 18 17 14 45 45 H 1.09002 * 109.47009 * 60.00667 * 18 17 14 46 46 H 0.97000 * 120.00154 * 0.02562 * 21 19 18 47 47 H 0.97001 * 119.99859 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2986 2.1755 -1.0685 5 7 2.6890 3.2809 -0.7833 6 6 2.7538 3.4649 0.5022 7 6 2.3016 2.1989 1.0996 8 6 2.1702 1.8510 2.5258 9 8 1.7776 0.7463 2.8486 10 7 2.4861 2.7570 3.4723 11 6 2.3561 2.4111 4.8899 12 1 1.4973 1.7539 5.0263 13 6 3.6250 1.6962 5.3588 14 6 2.1571 3.6873 5.7101 15 1 3.0160 4.3444 5.5737 16 6 0.8884 4.4023 5.2412 17 7 2.0273 3.3404 7.1316 18 6 2.4222 4.4678 7.9867 19 6 2.2756 4.0757 9.4344 20 8 1.8814 2.9660 9.7252 21 7 2.5834 4.9576 10.4060 22 6 2.4495 4.6010 11.7230 23 1 2.0977 3.6133 11.9820 24 6 2.7664 5.5104 12.7247 25 7 3.1949 6.7121 12.4096 26 14 2.5846 5.0243 14.5191 27 1 3.8561 4.4279 15.0016 28 1 2.2641 6.2278 15.3279 29 1 1.4892 4.0309 14.6543 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.0689 4.3582 1.0209 36 1 2.7997 3.6382 3.2149 37 1 4.4838 2.3534 5.2225 38 1 3.5280 1.4384 6.4135 39 1 3.7667 0.7871 4.7745 40 1 0.7463 5.3112 5.8257 41 1 0.9851 4.6596 4.1864 42 1 0.0295 3.7451 5.3775 43 1 1.0895 3.0357 7.3453 44 1 3.4604 4.7310 7.7846 45 1 1.7825 5.3249 7.7763 46 1 2.8990 5.8449 10.1734 47 1 3.4165 7.3468 13.1088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674734542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:14 Heat of formation + Delta-G solvation = -20.867398 kcal Electronic energy + Delta-G solvation = -28805.893612 eV Core-core repulsion = 24605.797611 eV Total energy + Delta-G solvation = -4200.096002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.31909 -40.07757 -38.48739 -37.28592 -35.14502 -34.59102 -34.06356 -33.76961 -31.35360 -31.08368 -30.33752 -29.60837 -26.38818 -25.49086 -24.40734 -24.23928 -23.33532 -21.90116 -20.82535 -20.50812 -19.29602 -18.36991 -18.08793 -17.92591 -16.88530 -16.45037 -15.97848 -15.34834 -15.23072 -15.04690 -14.89032 -14.58938 -14.34394 -14.02782 -13.85895 -13.84306 -13.80831 -13.51007 -13.09498 -13.00940 -12.43704 -12.29790 -12.23315 -12.14358 -11.94953 -11.63592 -11.58563 -11.48654 -11.34881 -11.31730 -11.05468 -10.83710 -10.73890 -10.40899 -10.30202 -10.23425 -9.87317 -9.52912 -9.31498 -8.50123 -8.10457 -7.98175 -6.43834 -3.84619 0.68471 1.38643 2.35941 2.86678 2.92044 3.16670 3.25508 3.31346 3.79004 3.87357 3.88252 4.09311 4.19649 4.33005 4.50481 4.61366 4.75277 4.78881 4.86518 4.94324 5.07686 5.14634 5.23007 5.24086 5.35515 5.41071 5.44368 5.45874 5.60450 5.62994 5.64645 5.78521 5.78876 5.85674 5.95424 6.00177 6.03932 6.21008 6.31943 6.51402 7.11106 7.20833 7.53434 7.57571 7.74481 7.91401 8.04095 8.58793 9.15902 9.51880 10.03132 10.73833 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030603 B = 0.001782 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.724466 B =15711.890442 C =16153.503053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C 0.054 3.946 4 O 0.091 5.909 5 N -0.354 5.354 6 C 0.022 3.978 7 C -0.264 4.264 8 C 0.599 3.401 9 O -0.529 6.529 10 N -0.714 5.714 11 C 0.155 3.845 12 H 0.092 0.908 13 C -0.153 4.153 14 C 0.077 3.923 15 H 0.081 0.919 16 C -0.185 4.185 17 N -0.657 5.657 18 C 0.053 3.947 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.200 0.800 36 H 0.397 0.603 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.353 0.647 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 -5.203 -26.244 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.010 4.010 4 O 0.032 5.968 5 N -0.059 5.059 6 C -0.161 4.161 7 C -0.271 4.271 8 C 0.385 3.615 9 O -0.406 6.406 10 N -0.365 5.365 11 C 0.051 3.949 12 H 0.110 0.890 13 C -0.211 4.211 14 C -0.034 4.034 15 H 0.100 0.900 16 C -0.244 4.244 17 N -0.289 5.289 18 C -0.080 4.080 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.217 0.783 36 H 0.231 0.769 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.173 0.827 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.291 -6.147 -26.688 27.418 hybrid contribution -0.390 1.581 1.306 2.087 sum -1.681 -4.567 -25.382 25.845 Atomic orbital electron populations 1.21713 0.92719 1.03225 1.02636 1.20423 0.97326 0.85372 1.05707 1.24972 0.94812 0.96137 0.85118 1.84586 1.61261 1.17550 1.33409 1.73670 1.16197 0.98535 1.17542 1.26390 1.00848 0.99246 0.89632 1.22138 1.14183 0.95319 0.95495 1.16710 0.77330 0.84525 0.82891 1.90808 1.46508 1.21243 1.82076 1.45855 1.67556 1.16507 1.06571 1.20933 1.00279 0.96334 0.77371 0.89008 1.22045 0.96021 0.99640 1.03395 1.21751 0.97778 0.94646 0.89254 0.90032 1.22544 0.98905 1.01323 1.01590 1.59996 1.33283 1.35209 1.00443 1.21692 1.01294 0.92027 0.92991 1.19792 0.84895 0.86473 0.86296 1.90535 1.51183 1.21639 1.83248 1.41863 1.58113 1.14402 1.05650 1.19704 1.41674 1.00667 0.80804 0.87897 1.25265 0.97049 0.95084 1.00579 1.69611 1.44949 1.05387 1.34383 0.85853 0.78838 0.77911 0.81670 1.20381 1.20953 1.19414 0.92367 0.90808 0.91711 0.89142 0.86631 0.78293 0.76899 0.93140 0.89340 0.93027 0.92152 0.92315 0.92108 0.82659 0.89572 0.93775 0.77491 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.53 16 2 C -0.05 -0.33 6.05 -27.88 -0.17 -0.50 16 3 C 0.05 0.45 6.80 -34.62 -0.24 0.22 16 4 O 0.09 0.83 11.06 18.66 0.21 1.04 16 5 N -0.35 -3.37 12.01 31.81 0.38 -2.99 16 6 C 0.02 0.17 11.95 -14.72 -0.18 -0.01 16 7 C -0.26 -2.36 6.47 -102.89 -0.67 -3.02 16 8 C 0.60 6.22 7.78 -12.53 -0.10 6.12 16 9 O -0.53 -7.00 14.91 5.28 0.08 -6.92 16 10 N -0.71 -6.19 4.38 -54.89 -0.24 -6.43 16 11 C 0.15 1.67 2.34 -67.93 -0.16 1.51 16 12 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 13 C -0.15 -1.81 9.33 37.16 0.35 -1.47 16 14 C 0.08 0.82 2.22 -67.72 -0.15 0.67 16 15 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 16 C -0.18 -1.74 9.01 37.16 0.33 -1.40 16 17 N -0.66 -9.56 5.11 -107.99 -0.55 -10.11 16 18 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 19 C 0.44 10.02 7.82 -10.98 -0.09 9.94 16 20 O -0.58 -15.40 15.78 5.55 0.09 -15.31 16 21 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 26 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.12 0.90 6.79 -51.93 -0.35 0.55 16 35 H 0.20 0.82 7.88 -52.49 -0.41 0.41 16 36 H 0.40 2.40 7.75 -40.82 -0.32 2.08 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.24 7.60 -51.93 -0.39 0.84 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 41 H 0.06 0.45 7.45 -51.93 -0.39 0.07 16 42 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 43 H 0.35 5.49 8.17 -39.29 -0.32 5.17 16 44 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 45 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 46 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -32.73 397.57 -6.33 -39.06 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.97 Total: 12.87 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.96 Total: 4.46 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.26 Total: -57.04 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.37 Total: -21.20 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.73 -6.33 -39.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674734542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.194 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds