Wall clock time and date at job start Tue Mar 31 2020 22:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.33491 * 126.83208 * 270.03130 * 3 2 1 5 5 N 1.20651 * 113.15967 * 179.97438 * 4 3 2 6 6 C 1.30018 * 112.30184 * 359.97438 * 5 4 3 7 7 C 1.37362 * 126.82334 * 89.71134 * 3 2 1 8 8 C 1.47394 * 128.56757 * 359.96323 * 7 3 2 9 9 O 1.21602 * 120.00242 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99964 * 179.97438 * 8 7 3 11 11 C 1.46499 * 120.00047 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47412 * 325.00413 * 11 10 8 13 13 C 1.53004 * 109.46717 * 85.00461 * 11 10 8 14 14 C 1.52997 * 109.47026 * 204.99970 * 11 10 8 15 15 H 1.09001 * 109.47264 * 299.99968 * 14 11 10 16 16 C 1.52996 * 109.47344 * 60.00401 * 14 11 10 17 17 N 1.46901 * 109.46921 * 180.02562 * 14 11 10 18 18 C 1.46903 * 110.99765 * 155.00022 * 17 14 11 19 19 C 1.50701 * 109.46927 * 179.97438 * 18 17 14 20 20 O 1.21294 * 120.00117 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99853 * 179.97438 * 19 18 17 22 22 C 1.37103 * 119.99893 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99893 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00049 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99886 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00133 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47079 * 89.99626 * 26 24 22 28 28 H 1.48502 * 109.46916 * 209.99782 * 26 24 22 29 29 H 1.48497 * 109.46757 * 329.99679 * 26 24 22 30 30 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 35 35 H 1.08000 * 127.33578 * 180.02562 * 6 5 4 36 36 H 0.97006 * 120.00108 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47219 * 59.99834 * 13 11 10 38 38 H 1.09005 * 109.46937 * 180.02562 * 13 11 10 39 39 H 1.08994 * 109.46789 * 299.99603 * 13 11 10 40 40 H 1.08994 * 109.47684 * 179.97438 * 16 14 11 41 41 H 1.09002 * 109.46901 * 300.00255 * 16 14 11 42 42 H 1.09001 * 109.47294 * 59.99585 * 16 14 11 43 43 H 1.00901 * 111.00196 * 278.95464 * 17 14 11 44 44 H 1.08998 * 109.47705 * 299.99982 * 18 17 14 45 45 H 1.09002 * 109.47009 * 60.00667 * 18 17 14 46 46 H 0.97000 * 120.00154 * 0.02562 * 21 19 18 47 47 H 0.97001 * 119.99859 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2986 2.1755 -1.0685 5 7 2.6890 3.2809 -0.7833 6 6 2.7538 3.4649 0.5022 7 6 2.3016 2.1989 1.0996 8 6 2.1702 1.8510 2.5258 9 8 1.7776 0.7463 2.8486 10 7 2.4861 2.7570 3.4723 11 6 2.3561 2.4111 4.8899 12 1 1.4973 1.7539 5.0263 13 6 3.6250 1.6962 5.3588 14 6 2.1571 3.6873 5.7101 15 1 3.0160 4.3444 5.5737 16 6 0.8884 4.4023 5.2412 17 7 2.0273 3.3404 7.1316 18 6 2.4222 4.4678 7.9867 19 6 2.2756 4.0757 9.4344 20 8 1.8814 2.9660 9.7252 21 7 2.5834 4.9576 10.4060 22 6 2.4495 4.6010 11.7230 23 1 2.0977 3.6133 11.9820 24 6 2.7664 5.5104 12.7247 25 7 3.1949 6.7121 12.4096 26 14 2.5846 5.0243 14.5191 27 1 3.8561 4.4279 15.0016 28 1 2.2641 6.2278 15.3279 29 1 1.4892 4.0309 14.6543 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.0689 4.3582 1.0209 36 1 2.7997 3.6382 3.2149 37 1 4.4838 2.3534 5.2225 38 1 3.5280 1.4384 6.4135 39 1 3.7667 0.7871 4.7745 40 1 0.7463 5.3112 5.8257 41 1 0.9851 4.6596 4.1864 42 1 0.0295 3.7451 5.3775 43 1 1.0895 3.0357 7.3453 44 1 3.4604 4.7310 7.7846 45 1 1.7825 5.3249 7.7763 46 1 2.8990 5.8449 10.1734 47 1 3.4165 7.3468 13.1088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674734542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:13 Heat of formation + Delta-G solvation = -44.945005 kcal Electronic energy + Delta-G solvation = -28806.937696 eV Core-core repulsion = 24605.797611 eV Total energy + Delta-G solvation = -4201.140085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.95727 -40.94517 -40.13859 -38.43085 -36.08496 -35.71177 -35.36715 -34.66357 -33.25643 -32.05763 -31.11912 -30.51785 -27.94046 -26.24306 -25.82886 -24.96644 -24.27459 -22.62338 -21.73395 -21.29596 -21.00545 -19.89971 -19.10067 -18.74839 -17.83183 -17.40464 -17.32650 -16.68306 -16.36873 -16.08274 -15.92702 -15.73164 -15.48988 -15.21124 -15.07868 -14.82042 -14.62008 -14.39923 -14.23009 -13.95053 -13.55862 -13.51385 -13.36487 -13.17860 -12.98178 -12.83748 -12.70603 -12.53663 -12.48365 -12.40391 -12.21850 -12.11920 -11.87536 -11.66083 -11.49231 -11.47500 -11.16771 -10.57136 -10.33959 -10.11824 -9.99422 -9.27116 -8.45562 -5.93678 0.00566 0.77264 1.38596 1.42535 1.54747 1.67931 2.08124 2.09915 2.14727 2.31110 3.00598 3.22209 3.24595 3.28393 3.54598 3.58689 3.67929 3.99268 4.05602 4.17980 4.23634 4.25749 4.33772 4.37476 4.49919 4.51143 4.59963 4.64539 4.72939 4.81355 4.82631 4.87724 4.96818 4.99291 5.06694 5.12412 5.24305 5.29053 5.38706 5.42626 5.52608 5.91559 6.12320 6.37871 6.48444 6.62208 7.11028 7.14741 7.16286 7.58958 8.14639 8.71670 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030603 B = 0.001782 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.724466 B =15711.890442 C =16153.503053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C 0.058 3.942 4 O 0.083 5.917 5 N -0.378 5.378 6 C 0.039 3.961 7 C -0.281 4.281 8 C 0.600 3.400 9 O -0.563 6.563 10 N -0.699 5.699 11 C 0.164 3.836 12 H 0.069 0.931 13 C -0.146 4.146 14 C 0.084 3.916 15 H 0.103 0.897 16 C -0.179 4.179 17 N -0.672 5.672 18 C 0.069 3.931 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.274 1.274 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.235 0.765 36 H 0.414 0.586 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.345 0.655 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -3.789 -27.518 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.007 4.007 4 O 0.027 5.973 5 N -0.086 5.086 6 C -0.144 4.144 7 C -0.289 4.289 8 C 0.387 3.613 9 O -0.443 6.443 10 N -0.351 5.351 11 C 0.059 3.941 12 H 0.087 0.913 13 C -0.205 4.205 14 C -0.026 4.026 15 H 0.121 0.879 16 C -0.238 4.238 17 N -0.304 5.304 18 C -0.063 4.063 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.196 1.196 29 H -0.199 1.199 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.251 0.749 36 H 0.251 0.749 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.164 0.836 44 H 0.126 0.874 45 H 0.087 0.913 46 H 0.231 0.769 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.779 -4.699 -28.008 28.410 hybrid contribution -0.546 1.087 1.638 2.040 sum -1.325 -3.612 -26.370 26.649 Atomic orbital electron populations 1.21688 0.92349 1.03927 1.01944 1.20495 0.97534 0.84602 1.06212 1.25327 0.93701 0.96619 0.85052 1.84579 1.61601 1.17646 1.33493 1.73666 1.17535 0.98889 1.18503 1.26912 0.98957 0.99554 0.88980 1.22062 1.15645 0.96438 0.94710 1.16890 0.76678 0.84125 0.83585 1.90798 1.48114 1.22769 1.82656 1.45610 1.67031 1.17071 1.05343 1.20661 0.98792 0.96086 0.78528 0.91295 1.21949 0.97155 0.99732 1.01626 1.21761 0.99369 0.94771 0.86721 0.87888 1.22481 0.97565 1.00774 1.02985 1.59949 1.32915 1.35045 1.02451 1.21540 1.03200 0.93075 0.88476 1.20959 0.82541 0.85382 0.88650 1.90507 1.52470 1.23460 1.84573 1.41929 1.58901 1.14990 1.05320 1.19641 1.43552 1.00227 0.82757 0.90449 1.26001 0.96255 0.94948 1.04087 1.69664 1.44864 1.05836 1.35684 0.84958 0.78683 0.77849 0.77041 1.19755 1.19566 1.19877 0.91510 0.89480 0.93818 0.86691 0.88001 0.74883 0.74903 0.91708 0.91764 0.93991 0.92039 0.90051 0.93213 0.83586 0.87379 0.91254 0.76920 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 71.98 0.71 -0.94 16 2 C -0.05 -0.63 6.05 29.85 0.18 -0.45 16 3 C 0.06 0.91 6.80 25.48 0.17 1.09 16 4 O 0.08 1.40 11.06 77.01 0.85 2.25 16 5 N -0.38 -6.52 12.01 -54.19 -0.65 -7.17 16 6 C 0.04 0.50 11.95 87.29 1.04 1.54 16 7 C -0.28 -4.63 6.47 -18.74 -0.12 -4.75 16 8 C 0.60 11.88 7.78 86.65 0.67 12.55 16 9 O -0.56 -15.08 14.91 -4.04 -0.06 -15.14 16 10 N -0.70 -10.73 4.38 -445.84 -1.95 -12.68 16 11 C 0.16 3.36 2.34 44.99 0.11 3.46 16 12 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 13 C -0.15 -3.39 9.33 71.98 0.67 -2.72 16 14 C 0.08 1.60 2.22 44.91 0.10 1.70 16 15 H 0.10 1.58 7.80 -2.39 -0.02 1.56 16 16 C -0.18 -2.91 9.01 71.98 0.65 -2.27 16 17 N -0.67 -18.87 5.11 -495.57 -2.53 -21.40 16 18 C 0.07 2.14 5.97 85.56 0.51 2.65 16 19 C 0.44 19.99 7.82 87.66 0.69 20.67 16 20 O -0.62 -33.85 15.78 -3.07 -0.05 -33.90 16 21 N -0.57 -28.65 5.29 -306.97 -1.62 -30.27 16 22 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -48.87 13.05 21.66 0.28 -48.58 16 26 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 1.60 6.79 -2.39 -0.02 1.59 16 35 H 0.23 0.99 7.88 -2.91 -0.02 0.96 16 36 H 0.41 3.58 7.75 -92.70 -0.72 2.86 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.82 7.60 -2.38 -0.02 1.80 16 39 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.02 7.45 -2.39 -0.02 1.00 16 41 H 0.08 0.96 7.45 -2.39 -0.02 0.94 16 42 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 43 H 0.35 10.72 8.17 -89.69 -0.73 9.99 16 44 H 0.11 2.92 8.05 -2.39 -0.02 2.90 16 45 H 0.07 1.83 7.44 -2.39 -0.02 1.81 16 46 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 47 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -72.90 397.57 1.80 -71.10 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -1.16 Total: 36.63 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.66 Total: 14.49 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -6.48 Total: -120.12 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: 0.74 Total: -46.79 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -72.90 1.80 -71.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674734542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.153 kcal (2) G-P(sol) polarization free energy of solvation -72.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds