Wall clock time and date at job start Tue Mar 31 2020 20:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29934 * 125.37851 * 2 1 4 4 C 1.36069 * 108.47858 * 180.18682 * 3 2 1 5 5 C 1.47418 * 126.45086 * 179.85808 * 4 3 2 6 6 O 1.21613 * 119.99752 * 179.68622 * 5 4 3 7 7 N 1.34777 * 119.99909 * 359.68960 * 5 4 3 8 8 C 1.46496 * 120.00105 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47535 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.46929 * 64.99145 * 9 8 7 11 11 C 1.52997 * 109.47317 * 185.00041 * 9 8 7 12 12 N 1.46906 * 109.46507 * 305.00004 * 9 8 7 13 13 C 1.46903 * 111.00066 * 298.94924 * 12 9 8 14 14 C 1.46906 * 110.99440 * 174.99770 * 12 9 8 15 15 C 1.50698 * 109.46791 * 189.99797 * 14 12 9 16 16 O 1.21294 * 120.00286 * 359.97438 * 15 14 12 17 17 N 1.34774 * 120.00040 * 179.97438 * 15 14 12 18 18 C 1.37102 * 120.00169 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99575 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99654 * 180.02562 * 18 17 15 21 21 N 1.31406 * 120.00501 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99464 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47358 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46979 * 119.99577 * 22 20 18 25 25 H 1.48495 * 109.47041 * 239.99342 * 22 20 18 26 26 C 1.36094 * 107.09763 * 359.59627 * 4 3 2 27 27 C 1.50704 * 126.52197 * 180.20508 * 26 4 3 28 28 O 1.34055 * 125.37886 * 179.74514 * 2 1 3 29 29 H 1.09003 * 109.47245 * 180.27898 * 1 2 3 30 30 H 1.08993 * 109.47359 * 300.27812 * 1 2 3 31 31 H 1.09000 * 109.46961 * 60.28194 * 1 2 3 32 32 H 0.97001 * 119.99516 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.47174 * 59.99261 * 8 7 5 34 34 H 1.09000 * 109.47051 * 299.99828 * 8 7 5 35 35 H 1.09002 * 109.47153 * 299.99641 * 11 9 8 36 36 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 37 37 H 1.09004 * 109.47261 * 59.99813 * 11 9 8 38 38 H 1.09004 * 109.46799 * 60.00373 * 13 12 9 39 39 H 1.08995 * 109.46967 * 180.02562 * 13 12 9 40 40 H 1.09002 * 109.46933 * 300.00619 * 13 12 9 41 41 H 1.08996 * 109.47414 * 309.99759 * 14 12 9 42 42 H 1.08997 * 109.46846 * 70.00181 * 14 12 9 43 43 H 0.96997 * 120.00170 * 0.02562 * 17 15 14 44 44 H 0.97003 * 120.00261 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.47161 * 89.99722 * 27 26 4 46 46 H 1.09001 * 109.46943 * 209.99975 * 27 26 4 47 47 H 1.08996 * 109.47540 * 330.00125 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 -0.0042 5 6 4.7439 1.5438 -0.0086 6 8 5.8604 1.0618 -0.0064 7 7 4.5878 2.8825 -0.0151 8 6 5.7631 3.7570 -0.0189 9 6 5.3113 5.2187 -0.0254 10 1 4.7889 5.4416 0.9049 11 6 6.5335 6.1298 -0.1551 12 7 4.4077 5.4468 -1.1610 13 6 5.0867 5.1796 -2.4360 14 6 3.8594 6.8094 -1.1320 15 6 2.7603 6.9305 -2.1559 16 8 2.4633 5.9758 -2.8425 17 7 2.1074 8.0995 -2.3086 18 6 1.1078 8.2098 -3.2404 19 1 0.8439 7.3600 -3.8524 20 6 0.4351 9.4154 -3.3982 21 7 0.7565 10.4495 -2.6539 22 14 -0.9274 9.5654 -4.6673 23 1 -1.0948 8.2677 -5.3697 24 1 -2.1975 9.9292 -3.9894 25 1 -0.5727 10.6186 -5.6522 26 6 3.5659 -0.6971 0.0024 27 6 4.7801 -1.5897 0.0053 28 8 2.2831 -1.0930 0.0049 29 1 -0.3634 -1.0277 0.0050 30 1 -0.3634 0.5181 0.8874 31 1 -0.3633 0.5094 -0.8925 32 1 3.6972 3.2669 -0.0172 33 1 6.3616 3.5573 -0.9077 34 1 6.3610 3.5659 0.8722 35 1 7.2039 5.9606 0.6875 36 1 6.2115 7.1712 -0.1601 37 1 7.0558 5.9069 -1.0855 38 1 5.4218 4.1426 -2.4588 39 1 4.3954 5.3566 -3.2599 40 1 5.9470 5.8416 -2.5352 41 1 3.4572 7.0182 -0.1407 42 1 4.6499 7.5240 -1.3613 43 1 2.3451 8.8632 -1.7598 44 1 0.2866 11.2910 -2.7638 45 1 5.0740 -1.7999 1.0337 46 1 4.5450 -2.5245 -0.5037 47 1 5.5994 -1.0905 -0.5118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675020504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:00 Heat of formation + Delta-G solvation = -44.213653 kcal Electronic energy + Delta-G solvation = -29520.172868 eV Core-core repulsion = 25319.064496 eV Total energy + Delta-G solvation = -4201.108371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.55598 -39.72643 -38.76516 -37.26938 -35.04206 -34.31580 -33.76589 -33.19746 -31.25610 -30.94140 -30.24944 -27.95318 -27.23542 -25.70637 -25.28784 -23.87045 -23.09776 -21.48323 -20.37963 -19.87974 -19.04661 -17.87188 -17.80083 -17.19580 -16.53802 -16.09319 -15.89398 -15.49611 -14.87667 -14.70814 -14.63116 -14.33752 -14.25424 -14.04364 -13.69089 -13.57824 -13.48968 -13.13115 -12.97586 -12.93500 -12.90211 -12.76011 -12.51082 -12.25849 -11.84096 -11.75097 -11.43568 -11.32324 -11.20426 -11.18777 -10.91222 -10.83478 -10.71897 -10.33489 -10.21062 -10.10893 -9.46751 -9.09297 -8.76925 -8.43929 -7.95819 -7.82464 -6.40376 -3.80856 0.97302 1.92760 2.32169 3.14018 3.16894 3.27383 3.30807 3.34569 3.77409 3.92663 3.99125 4.25915 4.44113 4.71653 4.72590 4.86240 4.99845 5.14877 5.16507 5.18236 5.21489 5.23172 5.26521 5.28010 5.46641 5.48713 5.55108 5.58414 5.71094 5.74035 5.79948 5.83300 5.92232 5.93123 6.02213 6.02960 6.19361 6.30319 6.48620 6.60311 7.26147 7.33057 7.38317 7.56825 7.69961 8.08492 8.22247 8.63877 9.20208 9.56687 10.08798 10.77560 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.002786 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.219998 B =10048.282070 C =12061.461405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.193 3.807 3 N -0.451 5.451 4 C -0.071 4.071 5 C 0.601 3.399 6 O -0.548 6.548 7 N -0.694 5.694 8 C 0.131 3.869 9 C 0.063 3.937 10 H 0.089 0.911 11 C -0.186 4.186 12 N -0.510 5.510 13 C 0.017 3.983 14 C 0.045 3.955 15 C 0.445 3.555 16 O -0.575 6.575 17 N -0.566 5.566 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.032 3.968 27 C -0.073 4.073 28 O -0.200 6.200 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.421 0.579 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.020 0.980 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.391 0.609 44 H 0.270 0.730 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 -17.531 9.203 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 N -0.181 5.181 4 C -0.191 4.191 5 C 0.387 3.613 6 O -0.428 6.428 7 N -0.344 5.344 8 C 0.007 3.993 9 C -0.046 4.046 10 H 0.107 0.893 11 C -0.245 4.245 12 N -0.233 5.233 13 C -0.130 4.130 14 C -0.086 4.086 15 C 0.230 3.770 16 O -0.459 6.459 17 N -0.203 5.203 18 C -0.425 4.425 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.755 3.245 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.025 4.025 27 C -0.130 4.130 28 O -0.088 6.088 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.259 0.741 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.038 0.962 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.934 -18.011 8.774 21.200 hybrid contribution -0.137 0.921 -0.320 0.984 sum 6.796 -17.090 8.454 20.242 Atomic orbital electron populations 1.20314 0.80769 1.04678 1.05668 1.26262 0.96525 0.78113 1.00720 1.70810 1.00601 1.29759 1.16911 1.21489 0.92305 0.92162 1.13122 1.16684 0.86048 0.82023 0.76558 1.90748 1.24314 1.75487 1.52231 1.45661 1.11639 1.04698 1.72440 1.21442 0.87639 0.88053 1.02207 1.22048 0.92976 0.93605 0.95974 0.89284 1.22402 0.98800 1.00596 1.02683 1.61813 1.33909 1.25310 1.02290 1.22592 0.97703 0.99844 0.92909 1.21875 0.97069 0.89349 1.00356 1.19741 0.85873 0.84216 0.87140 1.90499 1.68405 1.38024 1.48972 1.41871 1.32449 1.10829 1.35137 1.19736 1.10673 0.98137 1.14002 0.87907 1.25245 0.99189 0.95073 0.98494 1.69618 1.42489 1.02329 1.40017 0.85822 0.80211 0.78444 0.80009 1.19234 1.20771 1.20835 1.23670 0.83891 0.94534 1.00354 1.20557 0.90318 0.97614 1.04465 1.84318 1.16358 1.38132 1.69959 0.89396 0.88237 0.87994 0.74076 0.91164 0.91033 0.91892 0.91617 0.91804 0.92184 0.88653 0.96182 0.89456 0.93203 0.77557 0.91983 0.89228 0.90318 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.00 0.38 -0.04 16 2 C 0.19 2.30 8.30 -13.08 -0.11 2.19 16 3 N -0.45 -6.64 11.06 -7.65 -0.08 -6.72 16 4 C -0.07 -1.03 6.99 -83.02 -0.58 -1.61 16 5 C 0.60 9.07 7.81 -12.52 -0.10 8.98 16 6 O -0.55 -8.75 14.80 5.27 0.08 -8.67 16 7 N -0.69 -9.89 5.38 -61.39 -0.33 -10.22 16 8 C 0.13 1.62 4.68 -4.04 -0.02 1.60 16 9 C 0.06 0.77 2.50 -67.71 -0.17 0.60 16 10 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 11 C -0.19 -1.94 8.50 37.16 0.32 -1.62 16 12 N -0.51 -8.08 3.93 -236.33 -0.93 -9.01 16 13 C 0.02 0.28 8.46 60.07 0.51 0.79 16 14 C 0.04 0.77 4.89 -4.97 -0.02 0.75 16 15 C 0.44 10.30 7.47 -10.99 -0.08 10.22 16 16 O -0.58 -15.26 13.91 5.54 0.08 -15.18 16 17 N -0.57 -14.18 5.29 -10.96 -0.06 -14.24 16 18 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 22 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.03 0.39 7.44 -35.08 -0.26 0.13 16 27 C -0.07 -0.66 9.88 36.01 0.36 -0.30 16 28 O -0.20 -2.37 10.73 6.52 0.07 -2.30 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.42 6.48 7.87 -40.82 -0.32 6.16 16 33 H 0.07 0.91 6.70 -51.93 -0.35 0.57 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.71 6.75 -51.93 -0.35 0.36 16 37 H 0.06 0.69 6.39 -51.93 -0.33 0.36 16 38 H 0.06 0.93 6.44 -51.93 -0.33 0.59 16 39 H 0.10 1.91 5.82 -51.93 -0.30 1.61 16 40 H 0.02 0.29 6.28 -51.93 -0.33 -0.04 16 41 H 0.09 1.36 8.00 -51.93 -0.42 0.95 16 42 H 0.05 0.79 6.94 -51.93 -0.36 0.43 16 43 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.11 1.14 6.48 -51.93 -0.34 0.80 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -33.55 387.70 -6.30 -39.84 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -6.64 Total: 14.63 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: -0.03 Total: 13.81 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.68 Total: -63.96 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: 0.22 Total: -26.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.55 -6.30 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675020504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.370 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds