Wall clock time and date at job start Tue Mar 31 2020 20:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29934 * 125.37851 * 2 1 4 4 C 1.36069 * 108.47858 * 180.18682 * 3 2 1 5 5 C 1.47418 * 126.45086 * 179.85808 * 4 3 2 6 6 O 1.21613 * 119.99752 * 179.68622 * 5 4 3 7 7 N 1.34777 * 119.99909 * 359.68960 * 5 4 3 8 8 C 1.46496 * 120.00105 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47535 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.46929 * 64.99145 * 9 8 7 11 11 C 1.52997 * 109.47317 * 185.00041 * 9 8 7 12 12 N 1.46906 * 109.46507 * 305.00004 * 9 8 7 13 13 C 1.46903 * 111.00066 * 298.94924 * 12 9 8 14 14 C 1.46906 * 110.99440 * 174.99770 * 12 9 8 15 15 C 1.50698 * 109.46791 * 189.99797 * 14 12 9 16 16 O 1.21294 * 120.00286 * 359.97438 * 15 14 12 17 17 N 1.34774 * 120.00040 * 179.97438 * 15 14 12 18 18 C 1.37102 * 120.00169 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99575 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99654 * 180.02562 * 18 17 15 21 21 N 1.31406 * 120.00501 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99464 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47358 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46979 * 119.99577 * 22 20 18 25 25 H 1.48495 * 109.47041 * 239.99342 * 22 20 18 26 26 C 1.36094 * 107.09763 * 359.59627 * 4 3 2 27 27 C 1.50704 * 126.52197 * 180.20508 * 26 4 3 28 28 O 1.34055 * 125.37886 * 179.74514 * 2 1 3 29 29 H 1.09003 * 109.47245 * 180.27898 * 1 2 3 30 30 H 1.08993 * 109.47359 * 300.27812 * 1 2 3 31 31 H 1.09000 * 109.46961 * 60.28194 * 1 2 3 32 32 H 0.97001 * 119.99516 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.47174 * 59.99261 * 8 7 5 34 34 H 1.09000 * 109.47051 * 299.99828 * 8 7 5 35 35 H 1.09002 * 109.47153 * 299.99641 * 11 9 8 36 36 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 37 37 H 1.09004 * 109.47261 * 59.99813 * 11 9 8 38 38 H 1.09004 * 109.46799 * 60.00373 * 13 12 9 39 39 H 1.08995 * 109.46967 * 180.02562 * 13 12 9 40 40 H 1.09002 * 109.46933 * 300.00619 * 13 12 9 41 41 H 1.08996 * 109.47414 * 309.99759 * 14 12 9 42 42 H 1.08997 * 109.46846 * 70.00181 * 14 12 9 43 43 H 0.96997 * 120.00170 * 0.02562 * 17 15 14 44 44 H 0.97003 * 120.00261 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.47161 * 89.99722 * 27 26 4 46 46 H 1.09001 * 109.46943 * 209.99975 * 27 26 4 47 47 H 1.08996 * 109.47540 * 330.00125 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 -0.0042 5 6 4.7439 1.5438 -0.0086 6 8 5.8604 1.0618 -0.0064 7 7 4.5878 2.8825 -0.0151 8 6 5.7631 3.7570 -0.0189 9 6 5.3113 5.2187 -0.0254 10 1 4.7889 5.4416 0.9049 11 6 6.5335 6.1298 -0.1551 12 7 4.4077 5.4468 -1.1610 13 6 5.0867 5.1796 -2.4360 14 6 3.8594 6.8094 -1.1320 15 6 2.7603 6.9305 -2.1559 16 8 2.4633 5.9758 -2.8425 17 7 2.1074 8.0995 -2.3086 18 6 1.1078 8.2098 -3.2404 19 1 0.8439 7.3600 -3.8524 20 6 0.4351 9.4154 -3.3982 21 7 0.7565 10.4495 -2.6539 22 14 -0.9274 9.5654 -4.6673 23 1 -1.0948 8.2677 -5.3697 24 1 -2.1975 9.9292 -3.9894 25 1 -0.5727 10.6186 -5.6522 26 6 3.5659 -0.6971 0.0024 27 6 4.7801 -1.5897 0.0053 28 8 2.2831 -1.0930 0.0049 29 1 -0.3634 -1.0277 0.0050 30 1 -0.3634 0.5181 0.8874 31 1 -0.3633 0.5094 -0.8925 32 1 3.6972 3.2669 -0.0172 33 1 6.3616 3.5573 -0.9077 34 1 6.3610 3.5659 0.8722 35 1 7.2039 5.9606 0.6875 36 1 6.2115 7.1712 -0.1601 37 1 7.0558 5.9069 -1.0855 38 1 5.4218 4.1426 -2.4588 39 1 4.3954 5.3566 -3.2599 40 1 5.9470 5.8416 -2.5352 41 1 3.4572 7.0182 -0.1407 42 1 4.6499 7.5240 -1.3613 43 1 2.3451 8.8632 -1.7598 44 1 0.2866 11.2910 -2.7638 45 1 5.0740 -1.7999 1.0337 46 1 4.5450 -2.5245 -0.5037 47 1 5.5994 -1.0905 -0.5118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675020504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:59 Heat of formation + Delta-G solvation = -72.228126 kcal Electronic energy + Delta-G solvation = -29521.387667 eV Core-core repulsion = 25319.064496 eV Total energy + Delta-G solvation = -4202.323170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.49629 -40.92223 -40.26801 -38.75444 -36.05429 -35.95371 -35.25897 -34.04712 -33.25044 -32.09109 -30.95577 -29.38001 -28.24397 -27.01351 -26.57537 -25.35969 -24.09102 -22.43929 -21.52096 -21.16051 -20.62819 -19.78983 -18.90205 -18.14301 -17.96812 -17.19992 -16.99249 -16.80563 -16.53410 -16.26031 -15.91702 -15.67457 -15.42228 -15.18160 -14.98599 -14.76584 -14.42657 -14.31034 -14.16765 -13.88570 -13.65179 -13.58697 -13.52437 -13.44065 -13.20152 -13.07660 -12.90201 -12.80975 -12.44205 -12.37972 -12.33135 -12.25609 -12.10988 -11.84247 -11.76950 -11.43269 -11.20872 -10.25309 -10.16790 -9.96710 -9.73642 -9.15768 -8.44472 -5.92313 0.00538 0.93887 1.37043 1.42042 1.44972 1.55980 2.09615 2.10076 2.22149 2.29695 2.75703 2.93466 3.22870 3.45384 3.57272 3.70470 3.75985 4.06710 4.14086 4.25794 4.29480 4.33835 4.35102 4.54505 4.56136 4.56666 4.61809 4.63372 4.64238 4.65621 4.71690 4.80690 4.85836 4.90484 5.01351 5.08691 5.19041 5.21371 5.30032 5.42381 5.43602 5.89361 6.08356 6.20786 6.32304 6.60567 6.64248 7.08726 7.16629 7.60696 8.17319 8.73267 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.002786 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.219998 B =10048.282070 C =12061.461405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.195 3.805 3 N -0.489 5.489 4 C -0.107 4.107 5 C 0.597 3.403 6 O -0.564 6.564 7 N -0.695 5.695 8 C 0.132 3.868 9 C 0.069 3.931 10 H 0.102 0.898 11 C -0.180 4.180 12 N -0.526 5.526 13 C 0.028 3.972 14 C 0.059 3.941 15 C 0.443 3.557 16 O -0.613 6.613 17 N -0.576 5.576 18 C -0.328 4.328 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.990 3.010 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.038 3.962 27 C -0.070 4.070 28 O -0.198 6.198 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.415 0.585 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -17.921 10.289 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.014 4.014 3 N -0.219 5.219 4 C -0.226 4.226 5 C 0.383 3.617 6 O -0.444 6.444 7 N -0.344 5.344 8 C 0.009 3.991 9 C -0.039 4.039 10 H 0.120 0.880 11 C -0.239 4.239 12 N -0.250 5.250 13 C -0.120 4.120 14 C -0.072 4.072 15 C 0.230 3.770 16 O -0.499 6.499 17 N -0.214 5.214 18 C -0.457 4.457 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.814 3.186 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.019 4.019 27 C -0.126 4.126 28 O -0.085 6.085 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.252 0.748 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.128 0.872 42 H 0.089 0.911 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.192 -18.379 9.884 22.073 hybrid contribution -0.201 0.957 -0.634 1.165 sum 6.991 -17.422 9.250 20.928 Atomic orbital electron populations 1.20579 0.77780 1.06765 1.06209 1.27162 0.97919 0.77554 0.98807 1.70775 1.01109 1.31300 1.18756 1.21598 0.92316 0.93175 1.15482 1.16847 0.86179 0.82326 0.76316 1.90721 1.24792 1.75732 1.53198 1.45736 1.11786 1.04761 1.72158 1.21541 0.87116 0.87842 1.02640 1.22098 0.93305 0.93804 0.94675 0.88046 1.22355 0.98088 0.99894 1.03572 1.61715 1.35622 1.24521 1.03144 1.22375 0.97111 1.00549 0.91977 1.21730 0.95533 0.90804 0.99137 1.20812 0.86120 0.82883 0.87190 1.90482 1.69651 1.39179 1.50589 1.41933 1.32596 1.11701 1.35170 1.19650 1.12650 0.98039 1.15386 0.90524 1.25988 1.00883 0.94366 1.00073 1.69673 1.43218 1.02659 1.40759 0.84913 0.77737 0.78142 0.77810 1.19900 1.19600 1.19726 1.24231 0.84806 0.94367 0.98457 1.20674 0.88453 0.97851 1.05668 1.84348 1.16215 1.38067 1.69904 0.86564 0.87018 0.87879 0.74831 0.91844 0.89367 0.89541 0.91510 0.92147 0.91814 0.92887 0.94259 0.87163 0.91092 0.77081 0.91405 0.87529 0.87761 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 71.23 0.75 0.00 16 2 C 0.19 4.55 8.30 88.39 0.73 5.28 16 3 N -0.49 -14.64 11.06 -293.03 -3.24 -17.88 16 4 C -0.11 -3.16 6.99 40.41 0.28 -2.88 16 5 C 0.60 18.24 7.81 86.66 0.68 18.92 16 6 O -0.56 -18.01 14.80 -4.07 -0.06 -18.07 16 7 N -0.70 -19.85 5.38 -466.38 -2.51 -22.36 16 8 C 0.13 3.12 4.68 86.38 0.40 3.52 16 9 C 0.07 1.56 2.50 44.91 0.11 1.67 16 10 H 0.10 2.08 8.03 -2.39 -0.02 2.06 16 11 C -0.18 -3.24 8.50 71.98 0.61 -2.63 16 12 N -0.53 -16.29 3.93 -901.60 -3.54 -19.84 16 13 C 0.03 0.91 8.46 127.69 1.08 1.99 16 14 C 0.06 1.97 4.89 85.56 0.42 2.39 16 15 C 0.44 20.85 7.47 87.66 0.66 21.51 16 16 O -0.61 -33.79 13.91 -3.07 -0.04 -33.83 16 17 N -0.58 -29.41 5.29 -306.98 -1.62 -31.04 16 18 C -0.33 -18.62 9.68 84.04 0.81 -17.80 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 21 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 22 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 C 0.04 0.93 7.44 25.19 0.19 1.12 16 27 C -0.07 -1.18 9.88 71.24 0.70 -0.48 16 28 O -0.20 -4.51 10.73 0.40 0.00 -4.50 16 29 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.42 12.98 7.87 -92.71 -0.73 12.25 16 33 H 0.06 1.60 6.70 -2.39 -0.02 1.58 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.22 6.75 -2.39 -0.02 1.20 16 37 H 0.06 1.14 6.39 -2.38 -0.02 1.13 16 38 H 0.06 2.00 6.44 -2.38 -0.02 1.98 16 39 H 0.05 2.20 5.82 -2.39 -0.01 2.19 16 40 H 0.04 1.11 6.28 -2.39 -0.01 1.09 16 41 H 0.11 3.21 8.00 -2.39 -0.02 3.19 16 42 H 0.07 2.11 6.94 -2.39 -0.02 2.09 16 43 H 0.40 19.15 7.90 -92.71 -0.73 18.41 16 44 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 45 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.10 1.98 6.48 -2.39 -0.02 1.97 16 Total: -1.00 -74.90 387.70 -1.24 -76.14 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -0.43 Total: 43.33 kcal Atomic # 6 Polarization: 24.44 SS G_CDS: 7.90 Total: 32.34 kcal Atomic # 7 Polarization: -129.94 SS G_CDS: -10.63 Total: -140.58 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -0.10 Total: -56.40 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -74.90 -1.24 -76.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675020504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.914 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds