Wall clock time and date at job start Tue Mar 31 2020 20:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29934 * 125.37998 * 2 1 4 4 C 1.36070 * 108.47635 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.44811 * 180.02562 * 4 3 2 6 6 O 1.21609 * 119.99869 * 179.97438 * 5 4 3 7 7 N 1.34772 * 120.00017 * 359.97438 * 5 4 3 8 8 C 1.46504 * 120.00277 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47319 * 175.18746 * 8 7 5 10 10 H 1.09002 * 109.46830 * 295.31629 * 9 8 7 11 11 C 1.52999 * 109.46975 * 175.31456 * 9 8 7 12 12 N 1.46907 * 109.47136 * 55.31219 * 9 8 7 13 13 C 1.46902 * 110.99706 * 192.49241 * 12 9 8 14 14 C 1.46905 * 110.99645 * 68.54345 * 12 9 8 15 15 C 1.50699 * 109.46751 * 189.99727 * 14 12 9 16 16 O 1.21297 * 120.00239 * 0.02562 * 15 14 12 17 17 N 1.34775 * 120.00089 * 179.97438 * 15 14 12 18 18 C 1.37096 * 120.00260 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99537 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00032 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99943 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00144 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47045 * 89.99542 * 22 20 18 24 24 H 1.48492 * 109.47094 * 209.99837 * 22 20 18 25 25 H 1.48503 * 109.46717 * 330.00060 * 22 20 18 26 26 C 1.36088 * 107.10449 * 359.97438 * 4 3 2 27 27 C 1.50705 * 126.52483 * 180.26136 * 26 4 3 28 28 O 1.34061 * 125.37924 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47225 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47014 * 300.00666 * 1 2 3 31 31 H 1.08998 * 109.47111 * 60.00239 * 1 2 3 32 32 H 0.97002 * 120.00142 * 359.97438 * 7 5 4 33 33 H 1.09006 * 109.46338 * 295.18615 * 8 7 5 34 34 H 1.08993 * 109.47247 * 55.18399 * 8 7 5 35 35 H 1.09005 * 109.46897 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.47070 * 299.99588 * 11 9 8 37 37 H 1.08998 * 109.47105 * 60.00273 * 11 9 8 38 38 H 1.08999 * 109.46838 * 53.76696 * 13 12 9 39 39 H 1.08999 * 109.46939 * 173.76126 * 13 12 9 40 40 H 1.08993 * 109.47235 * 293.76587 * 13 12 9 41 41 H 1.08995 * 109.46879 * 309.99375 * 14 12 9 42 42 H 1.08996 * 109.47239 * 69.99989 * 14 12 9 43 43 H 0.97000 * 119.99433 * 359.97438 * 17 15 14 44 44 H 0.96999 * 119.99692 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.46851 * 179.71579 * 27 26 4 46 46 H 1.08998 * 109.46965 * 299.71250 * 27 26 4 47 47 H 1.08992 * 109.46776 * 59.71617 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0006 5 6 4.7440 1.5437 -0.0003 6 8 5.8604 1.0617 -0.0004 7 7 4.5880 2.8824 0.0002 8 6 5.7633 3.7569 -0.0001 9 6 5.3145 5.2146 -0.1205 10 1 4.8345 5.3683 -1.0870 11 6 6.5316 6.1343 -0.0034 12 7 4.3617 5.5240 0.9541 13 6 3.6862 6.8047 0.7060 14 6 5.0274 5.5249 2.2637 15 6 3.9901 5.6001 3.3543 16 8 2.8122 5.6479 3.0687 17 7 4.3711 5.6134 4.6469 18 6 3.4275 5.6814 5.6391 19 1 2.3787 5.7247 5.3848 20 6 3.8203 5.6945 6.9718 21 7 2.9158 5.7602 7.9229 22 14 5.6343 5.6203 7.4117 23 1 6.1802 6.9988 7.4951 24 1 5.7984 4.9427 8.7227 25 1 6.3663 4.8605 6.3666 26 6 3.5659 -0.6971 -0.0003 27 6 4.7801 -1.5898 0.0047 28 8 2.2831 -1.0931 -0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.6974 3.2669 -0.0001 33 1 6.3162 3.6226 0.9297 34 1 6.4047 3.5034 -0.8440 35 1 6.2117 7.1729 -0.0888 36 1 7.0115 5.9806 0.9631 37 1 7.2384 5.9048 -0.8008 38 1 3.2361 6.7917 -0.2866 39 1 2.9092 6.9567 1.4552 40 1 4.4119 7.6157 0.7654 41 1 5.6077 4.6092 2.3768 42 1 5.6910 6.3867 2.3333 43 1 5.3130 5.5741 4.8753 44 1 3.1901 5.7697 8.8532 45 1 4.4641 -2.6330 0.0087 46 1 5.3782 -1.3948 -0.8854 47 1 5.3761 -1.3873 0.8945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675020505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:04 Heat of formation + Delta-G solvation = -37.916868 kcal Electronic energy + Delta-G solvation = -29940.189354 eV Core-core repulsion = 25739.354032 eV Total energy + Delta-G solvation = -4200.835322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.51640 -39.74134 -38.85716 -37.33166 -35.00511 -34.34354 -33.80605 -33.17362 -31.64835 -31.03925 -30.22952 -28.24314 -27.31356 -25.79062 -24.87106 -23.84982 -23.04487 -21.45083 -20.44974 -20.10269 -19.18123 -18.19310 -17.81464 -17.15678 -16.61471 -16.10841 -15.86536 -15.35592 -15.00140 -14.70902 -14.66213 -14.30076 -14.27742 -14.01895 -13.71377 -13.61918 -13.37087 -13.19620 -12.92068 -12.87502 -12.80498 -12.76973 -12.50745 -12.45518 -12.24663 -12.02365 -11.74323 -11.35005 -11.29577 -11.21006 -10.94931 -10.84964 -10.77923 -10.57312 -10.11537 -9.95563 -9.51050 -9.06607 -8.73679 -8.55757 -8.15670 -7.94001 -6.28950 -3.79886 1.01793 1.96431 2.35825 3.04905 3.08091 3.15304 3.16703 3.35300 3.77068 3.79741 3.95246 4.12410 4.47716 4.61786 4.73276 4.86563 4.86992 4.97283 5.16511 5.19035 5.21053 5.22393 5.25540 5.32334 5.40385 5.43300 5.49406 5.56001 5.67374 5.72399 5.74971 5.80927 5.84026 5.86798 5.88910 6.00633 6.04982 6.08435 6.47298 6.53819 7.14501 7.27345 7.36469 7.60936 7.72971 8.17323 8.25732 8.62966 8.97992 9.45323 9.86868 10.84297 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.003394 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.385335 B = 8248.985181 C = 9408.429632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.192 3.808 3 N -0.451 5.451 4 C -0.071 4.071 5 C 0.601 3.399 6 O -0.547 6.547 7 N -0.695 5.695 8 C 0.129 3.871 9 C 0.064 3.936 10 H 0.090 0.910 11 C -0.185 4.185 12 N -0.511 5.511 13 C 0.021 3.979 14 C 0.039 3.961 15 C 0.454 3.546 16 O -0.557 6.557 17 N -0.592 5.592 18 C -0.303 4.303 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.883 5.883 22 Si 0.878 3.122 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.269 1.269 26 C 0.032 3.968 27 C -0.064 4.064 28 O -0.199 6.199 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.421 0.579 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.018 0.982 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.369 0.631 44 H 0.273 0.727 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -9.392 -19.350 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.017 4.017 3 N -0.181 5.181 4 C -0.191 4.191 5 C 0.386 3.614 6 O -0.426 6.426 7 N -0.346 5.346 8 C 0.005 3.995 9 C -0.045 4.045 10 H 0.109 0.891 11 C -0.244 4.244 12 N -0.234 5.234 13 C -0.126 4.126 14 C -0.093 4.093 15 C 0.240 3.760 16 O -0.439 6.439 17 N -0.232 5.232 18 C -0.431 4.431 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.523 5.523 22 Si 0.704 3.296 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.024 4.024 27 C -0.121 4.121 28 O -0.087 6.087 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.259 0.741 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.037 0.963 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.202 0.798 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.616 -9.413 -19.300 21.776 hybrid contribution 1.856 0.171 0.697 1.989 sum 5.472 -9.242 -18.604 21.482 Atomic orbital electron populations 1.20307 0.80801 1.04707 1.05571 1.26246 0.96518 0.78133 1.00790 1.70786 1.00611 1.29787 1.16931 1.21478 0.92287 0.92161 1.13184 1.16690 0.86086 0.82013 0.76576 1.90772 1.24260 1.75608 1.51920 1.45625 1.11541 1.04686 1.72720 1.21448 0.87709 0.88131 1.02255 1.22057 0.92624 0.93529 0.96306 0.89141 1.22404 0.98724 1.00385 1.02875 1.61773 1.27893 1.33714 1.00063 1.22561 0.99255 0.87873 1.02938 1.21974 0.95951 1.01665 0.89688 1.19636 0.89704 0.83772 0.82887 1.90522 1.18089 1.53292 1.82002 1.42211 1.08142 1.67177 1.05682 1.19416 0.91613 1.47691 0.84400 0.86288 1.25017 0.97952 0.97730 0.95411 1.69621 1.32967 1.49557 1.00141 0.86699 0.85052 0.78821 0.79015 1.19665 1.20182 1.19501 1.23661 0.83915 0.94550 1.00267 1.20415 0.89496 0.96744 1.05432 1.84322 1.16315 1.38102 1.69940 0.89383 0.87974 0.88334 0.74126 0.91443 0.90793 0.91775 0.91751 0.91797 0.92135 0.88359 0.96329 0.89414 0.92945 0.79823 0.91676 0.90481 0.88435 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.00 0.38 -0.05 16 2 C 0.19 2.37 8.30 -13.08 -0.11 2.26 16 3 N -0.45 -6.82 11.06 -7.65 -0.08 -6.90 16 4 C -0.07 -1.08 6.99 -83.02 -0.58 -1.66 16 5 C 0.60 9.43 7.81 -12.52 -0.10 9.33 16 6 O -0.55 -9.11 15.60 5.27 0.08 -9.03 16 7 N -0.69 -10.11 5.41 -61.38 -0.33 -10.44 16 8 C 0.13 1.60 4.94 -4.04 -0.02 1.58 16 9 C 0.06 0.74 2.47 -67.71 -0.17 0.57 16 10 H 0.09 0.95 7.93 -51.93 -0.41 0.53 16 11 C -0.18 -1.79 8.41 37.16 0.31 -1.48 16 12 N -0.51 -7.71 3.82 -236.33 -0.90 -8.61 16 13 C 0.02 0.32 8.90 60.07 0.53 0.85 16 14 C 0.04 0.65 4.31 -4.97 -0.02 0.63 16 15 C 0.45 10.33 7.52 -10.99 -0.08 10.25 16 16 O -0.56 -14.67 13.88 5.54 0.08 -14.60 16 17 N -0.59 -14.30 5.09 -10.96 -0.06 -14.35 16 18 C -0.30 -8.62 10.16 -14.94 -0.15 -8.78 16 19 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 21 N -0.88 -26.01 13.96 55.50 0.77 -25.23 16 22 Si 0.88 19.71 27.74 -169.99 -4.72 14.99 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -5.58 6.52 56.52 0.37 -5.22 16 26 C 0.03 0.42 7.44 -35.08 -0.26 0.16 16 27 C -0.06 -0.62 9.13 36.01 0.33 -0.29 16 28 O -0.20 -2.47 10.73 6.50 0.07 -2.41 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.42 6.49 7.80 -40.82 -0.32 6.17 16 33 H 0.07 0.90 6.65 -51.93 -0.35 0.56 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.62 6.92 -51.93 -0.36 0.26 16 36 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.77 7.98 -51.93 -0.41 0.35 16 39 H 0.10 1.83 5.92 -51.93 -0.31 1.52 16 40 H 0.02 0.25 6.96 -51.93 -0.36 -0.12 16 41 H 0.09 1.40 6.30 -51.93 -0.33 1.07 16 42 H 0.05 0.78 6.81 -51.93 -0.35 0.42 16 43 H 0.37 7.92 5.76 -40.82 -0.24 7.69 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 47 H 0.10 1.00 8.07 -51.93 -0.42 0.58 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -35.30 386.71 -6.00 -41.30 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.71 Total: 15.01 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -0.03 Total: 14.44 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -0.60 Total: -65.54 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.23 Total: -26.03 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.72 Total: 14.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.30 -6.00 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675020505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.384 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds