Wall clock time and date at job start Tue Mar 31 2020 21:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29950 * 126.28324 * 2 1 4 4 O 1.21298 * 110.25095 * 180.02562 * 3 2 1 5 5 C 1.33640 * 109.80885 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.55149 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47071 * 269.98211 * 6 5 4 8 8 C 1.53005 * 109.46676 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46473 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00366 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99553 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99734 * 174.80446 * 11 9 8 13 13 C 1.53004 * 112.94288 * 295.30447 * 12 11 9 14 14 C 1.52994 * 109.47431 * 304.23714 * 13 12 11 15 15 O 1.42898 * 109.47567 * 178.35013 * 14 13 12 16 16 C 1.53944 * 113.74085 * 163.71786 * 12 11 9 17 17 N 1.47808 * 86.03631 * 222.07955 * 16 12 11 18 18 C 1.36942 * 134.45937 * 204.64515 * 17 16 12 19 19 H 1.07998 * 120.00416 * 179.87223 * 18 17 16 20 20 C 1.38814 * 119.99537 * 359.86351 * 18 17 16 21 21 N 1.31614 * 120.00075 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99757 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47212 * 89.99923 * 22 20 18 24 24 H 1.48497 * 109.47296 * 210.00184 * 22 20 18 25 25 H 1.48502 * 109.47020 * 330.00250 * 22 20 18 26 26 C 1.47583 * 91.05326 * 24.54888 * 17 16 12 27 27 N 1.31135 * 106.90094 * 0.02562 * 5 4 3 28 28 H 1.09005 * 109.47296 * 89.98068 * 1 2 3 29 29 H 1.09004 * 109.47086 * 209.96964 * 1 2 3 30 30 H 1.08995 * 109.47496 * 329.97011 * 1 2 3 31 31 H 1.09007 * 109.46999 * 29.98031 * 6 5 4 32 32 H 1.09003 * 109.47030 * 149.97749 * 6 5 4 33 33 H 1.08994 * 109.46751 * 299.99619 * 7 6 5 34 34 H 1.08992 * 109.47094 * 59.99860 * 7 6 5 35 35 H 1.08999 * 109.47097 * 299.99819 * 8 7 6 36 36 H 1.09002 * 109.47286 * 60.00265 * 8 7 6 37 37 H 0.96994 * 119.99617 * 354.79889 * 11 9 8 38 38 H 1.09003 * 109.47029 * 64.23755 * 13 12 11 39 39 H 1.09003 * 109.47384 * 184.23539 * 13 12 11 40 40 H 1.09005 * 109.47090 * 298.35033 * 14 13 12 41 41 H 1.08999 * 109.47276 * 58.34678 * 14 13 12 42 42 H 0.96696 * 114.00442 * 180.02562 * 15 14 13 43 43 H 1.08994 * 113.77019 * 336.34658 * 16 12 11 44 44 H 1.08996 * 113.76921 * 107.74339 * 16 12 11 45 45 H 0.97006 * 119.99604 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.76999 * 221.15530 * 26 17 16 47 47 H 1.08997 * 113.86924 * 89.76375 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 -0.0005 5 6 3.5298 -0.6210 -0.0003 6 6 4.7970 -1.4368 -0.0003 7 6 5.2255 -1.7134 -1.4428 8 6 6.5123 -2.5412 -1.4426 9 6 6.9340 -2.8142 -2.8635 10 8 6.2704 -2.3891 -3.7853 11 7 8.0481 -3.5317 -3.1097 12 6 8.3966 -3.8943 -4.4856 13 6 7.3775 -4.8356 -5.1308 14 6 7.2124 -6.0827 -4.2600 15 8 6.2324 -6.9443 -4.8426 16 6 9.8568 -4.3516 -4.6551 17 7 9.8595 -3.5407 -5.8909 18 6 10.5800 -3.5691 -7.0551 19 1 10.3823 -2.8437 -7.8304 20 6 11.5644 -4.5304 -7.2387 21 7 11.8051 -5.4146 -6.2941 22 14 12.5477 -4.5688 -8.8266 23 1 13.7554 -3.7170 -8.6817 24 1 12.9591 -5.9651 -9.1204 25 1 11.7101 -4.0548 -9.9400 26 6 8.7730 -2.6899 -5.3675 27 7 2.3030 -1.0840 -0.0002 28 1 -0.3634 0.0003 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 5.5844 -0.8849 0.5132 32 1 4.6208 -2.3816 0.5141 33 1 4.4381 -2.2653 -1.9561 34 1 5.4016 -0.7687 -1.9570 35 1 7.2994 -1.9889 -0.9293 36 1 6.3365 -3.4860 -0.9283 37 1 8.6190 -3.8080 -2.3758 38 1 6.4182 -4.3259 -5.2209 39 1 7.7282 -5.1275 -6.1207 40 1 8.1651 -6.6084 -4.1939 41 1 6.8898 -5.7885 -3.2613 42 1 6.0755 -7.7566 -4.3421 43 1 10.5272 -3.9764 -3.8819 44 1 9.9644 -5.4219 -4.8304 45 1 12.4933 -6.0861 -6.4223 46 1 8.0170 -2.4362 -6.1106 47 1 9.1227 -1.8250 -4.8040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675110925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:44 Heat of formation + Delta-G solvation = -4.747700 kcal Electronic energy + Delta-G solvation = -29122.387846 eV Core-core repulsion = 24922.990846 eV Total energy + Delta-G solvation = -4199.396999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -46.61479 -41.42044 -39.44019 -37.68311 -37.19789 -36.27469 -35.20687 -33.85125 -33.37814 -31.87025 -30.22756 -29.37660 -28.73228 -26.82833 -25.38464 -24.69980 -23.83143 -23.16648 -22.06668 -21.21878 -20.08999 -19.14172 -18.77441 -18.56295 -18.36173 -17.90880 -17.08549 -16.79517 -16.59510 -16.26007 -15.84599 -15.70929 -15.29592 -15.01479 -14.91927 -14.58818 -14.48579 -14.37544 -13.97661 -13.77966 -13.45202 -13.34568 -13.30392 -13.13326 -12.92319 -12.80072 -12.65813 -12.56269 -12.52362 -12.25009 -12.21205 -12.08246 -12.03883 -11.72253 -11.64817 -11.37242 -10.96790 -10.90279 -10.85048 -10.54660 -9.95724 -8.95309 -7.93519 -5.25965 0.12622 1.17965 1.45592 1.46896 1.55512 1.83963 1.86216 2.25841 2.51118 2.72569 3.08619 3.17700 3.26945 3.40302 3.64603 3.80001 3.88713 4.09007 4.15421 4.18129 4.28056 4.35728 4.43078 4.51116 4.52591 4.54987 4.64112 4.71083 4.73949 4.76308 4.78337 4.87406 4.91299 4.93227 5.07606 5.09020 5.15177 5.20300 5.21897 5.25365 5.36658 5.48843 5.78909 5.90940 6.78173 6.91049 6.94362 7.14727 7.49402 7.56676 8.50415 9.23243 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.002058 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.242857 B =13604.630912 C =14175.993052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.158 3.842 3 N -0.416 5.416 4 O 0.065 5.935 5 C 0.194 3.806 6 C -0.021 4.021 7 C -0.097 4.097 8 C -0.125 4.125 9 C 0.504 3.496 10 O -0.583 6.583 11 N -0.707 5.707 12 C 0.157 3.843 13 C -0.089 4.089 14 C 0.093 3.907 15 O -0.595 6.595 16 C 0.172 3.828 17 N -0.635 5.635 18 C -0.237 4.237 19 H 0.076 0.924 20 C -0.058 4.058 21 N -0.945 5.945 22 Si 0.976 3.024 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.275 1.275 26 C 0.125 3.875 27 N -0.508 5.508 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.418 0.582 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.397 0.603 43 H 0.037 0.963 44 H 0.057 0.943 45 H 0.251 0.749 46 H 0.033 0.967 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.535 3.501 20.987 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 N -0.128 5.128 4 O 0.009 5.991 5 C -0.026 4.026 6 C -0.059 4.059 7 C -0.136 4.136 8 C -0.165 4.165 9 C 0.293 3.707 10 O -0.463 6.463 11 N -0.360 5.360 12 C 0.069 3.931 13 C -0.128 4.128 14 C 0.015 3.985 15 O -0.403 6.403 16 C 0.047 3.953 17 N -0.362 5.362 18 C -0.365 4.365 19 H 0.094 0.906 20 C -0.252 4.252 21 N -0.594 5.594 22 Si 0.805 3.195 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.200 1.200 26 C -0.001 4.001 27 N -0.243 5.243 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.247 0.753 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.436 4.657 19.682 26.062 hybrid contribution 1.195 -0.394 -0.726 1.452 sum -15.241 4.263 18.957 24.694 Atomic orbital electron populations 1.20331 0.80724 1.05813 1.05278 1.26634 1.02174 0.83251 0.99383 1.74626 0.89939 1.24943 1.23327 1.85249 1.22099 1.25651 1.66053 1.29602 0.97944 0.81861 0.93222 1.20566 0.87146 0.99311 0.98884 1.21201 0.97215 1.00681 0.94548 1.21673 0.98924 1.04432 0.91426 1.21559 0.79580 0.76509 0.93080 1.90714 1.54993 1.52062 1.48519 1.45980 1.26420 1.55627 1.08016 1.22074 0.94276 0.94572 0.82155 1.21177 0.97981 0.94860 0.98803 1.21967 0.90945 0.89929 0.95636 1.86441 1.61668 1.36508 1.55732 1.22467 0.89189 0.96924 0.86730 1.46038 1.41435 1.34442 1.14249 1.19283 1.12618 1.12232 0.92402 0.90608 1.25526 1.00314 0.97922 1.01413 1.69926 1.35395 1.19754 1.34301 0.85116 0.78547 0.76656 0.79222 1.21121 1.21613 1.19990 1.22868 0.89105 0.93804 0.94323 1.71934 1.00610 1.29881 1.21849 0.88443 0.87744 0.88343 0.84262 0.84541 0.92759 0.92333 0.84811 0.84894 0.74469 0.92222 0.93508 0.93515 0.91353 0.75338 0.94485 0.92425 0.93949 0.94899 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.51 71.24 0.75 -0.02 16 2 C 0.16 3.27 8.22 138.46 1.14 4.41 16 3 N -0.42 -9.78 12.16 -60.33 -0.73 -10.51 16 4 O 0.06 1.37 11.31 74.86 0.85 2.21 16 5 C 0.19 3.37 7.77 88.38 0.69 4.06 16 6 C -0.02 -0.17 5.84 29.85 0.17 0.01 16 7 C -0.10 -1.38 4.49 30.60 0.14 -1.24 16 8 C -0.13 -1.34 5.70 29.85 0.17 -1.17 16 9 C 0.50 12.09 7.49 87.66 0.66 12.75 16 10 O -0.58 -20.29 14.38 -3.01 -0.04 -20.33 16 11 N -0.71 -17.43 4.53 -427.57 -1.94 -19.37 16 12 C 0.16 5.70 0.67 5.36 0.00 5.71 16 13 C -0.09 -3.42 4.81 30.59 0.15 -3.27 16 14 C 0.09 2.77 6.83 71.98 0.49 3.26 16 15 O -0.59 -17.70 13.66 -148.98 -2.03 -19.73 16 16 C 0.17 7.57 6.69 86.44 0.58 8.15 16 17 N -0.63 -32.83 3.55 -715.57 -2.54 -35.37 16 18 C -0.24 -13.53 10.70 84.03 0.90 -12.63 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 20 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 21 N -0.95 -54.95 11.39 21.65 0.25 -54.70 16 22 Si 0.98 45.79 29.55 68.60 2.03 47.81 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 26 C 0.13 5.50 7.55 86.49 0.65 6.16 16 27 N -0.51 -10.73 11.55 -303.20 -3.50 -14.24 16 28 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.14 0.23 8.14 -2.38 -0.02 0.21 16 32 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 34 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.13 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.42 7.11 8.70 -92.71 -0.81 6.30 16 38 H 0.06 2.43 7.08 -2.39 -0.02 2.41 16 39 H 0.05 2.17 8.02 -2.39 -0.02 2.15 16 40 H 0.05 1.43 7.54 -2.38 -0.02 1.41 16 41 H 0.07 1.61 7.62 -2.39 -0.02 1.59 16 42 H 0.40 7.10 9.12 -74.06 -0.68 6.43 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.06 2.81 6.56 -2.39 -0.02 2.80 16 45 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 46 H 0.03 1.54 8.10 -2.39 -0.02 1.52 16 47 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -84.26 394.53 -1.19 -85.45 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -0.48 Total: 15.42 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 6.95 Total: 23.35 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -8.46 Total: -134.18 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.23 Total: -37.85 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -84.26 -1.19 -85.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675110925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.704 kcal (2) G-P(sol) polarization free energy of solvation -84.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds