Wall clock time and date at job start Tue Mar 31 2020 20:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32167 * 119.14381 * 2 1 4 4 C 1.32362 * 120.60802 * 180.30974 * 3 2 1 5 5 C 1.47503 * 120.51338 * 179.71932 * 4 3 2 6 6 O 1.21598 * 119.99727 * 186.71402 * 5 4 3 7 7 N 1.34776 * 119.99761 * 6.70946 * 5 4 3 8 8 C 1.46497 * 119.99947 * 5.40109 * 7 5 4 9 9 C 1.46498 * 119.99917 * 185.39832 * 7 5 4 10 10 C 1.52994 * 109.47395 * 270.00204 * 9 7 5 11 11 H 1.09007 * 109.47118 * 60.00176 * 10 9 7 12 12 O 1.42903 * 109.47270 * 299.99936 * 10 9 7 13 13 C 1.53000 * 109.47110 * 179.97438 * 10 9 7 14 14 N 1.46508 * 109.47184 * 184.99933 * 13 10 9 15 15 C 1.46501 * 119.99977 * 90.00045 * 14 13 10 16 16 C 1.36932 * 120.00011 * 270.00571 * 14 13 10 17 17 H 1.08005 * 120.00298 * 24.09943 * 16 14 13 18 18 C 1.38815 * 120.00040 * 204.09811 * 16 14 13 19 19 N 1.31613 * 119.99738 * 14.37488 * 18 16 14 20 20 Si 1.86802 * 119.99951 * 194.37298 * 18 16 14 21 21 H 1.48497 * 109.46803 * 90.00367 * 20 18 16 22 22 H 1.48502 * 109.46838 * 209.99831 * 20 18 16 23 23 H 1.48498 * 109.47498 * 329.99876 * 20 18 16 24 24 C 1.46680 * 118.97930 * 359.44205 * 4 3 2 25 25 O 1.21851 * 120.78371 * 180.25256 * 24 4 3 26 26 N 1.35153 * 118.43105 * 0.27491 * 24 4 3 27 27 H 0.96998 * 120.36993 * 180.02562 * 26 24 4 28 28 C 1.34896 * 119.26432 * 0.02562 * 26 24 4 29 29 C 1.50695 * 119.50289 * 179.97438 * 28 26 24 30 30 H 1.09000 * 109.47424 * 270.25572 * 1 2 3 31 31 H 1.09002 * 109.47189 * 30.25871 * 1 2 3 32 32 H 1.08996 * 109.47261 * 150.25373 * 1 2 3 33 33 H 1.08994 * 109.47350 * 275.55180 * 8 7 5 34 34 H 1.08995 * 109.47376 * 35.55505 * 8 7 5 35 35 H 1.08998 * 109.46845 * 155.55304 * 8 7 5 36 36 H 1.08997 * 109.47059 * 149.99713 * 9 7 5 37 37 H 1.09005 * 109.46857 * 30.00279 * 9 7 5 38 38 H 0.96695 * 114.00033 * 300.00427 * 12 10 9 39 39 H 1.08990 * 109.47423 * 305.00242 * 13 10 9 40 40 H 1.09003 * 109.47207 * 65.00532 * 13 10 9 41 41 H 1.08998 * 109.46671 * 94.20403 * 15 14 13 42 42 H 1.08999 * 109.46958 * 214.20476 * 15 14 13 43 43 H 1.08998 * 109.47053 * 334.20645 * 15 14 13 44 44 H 0.97001 * 120.00314 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.46789 * 359.97438 * 29 28 26 46 46 H 1.08999 * 109.47512 * 119.99554 * 29 28 26 47 47 H 1.09004 * 109.47477 * 239.99923 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1506 1.1543 0.0000 4 6 3.4738 1.1882 -0.0062 5 6 4.1900 2.4777 -0.0124 6 8 5.3989 2.5010 -0.1411 7 7 3.5044 3.6299 0.1245 8 6 2.0654 3.5980 0.3977 9 6 4.1981 4.9142 0.0002 10 6 4.7088 5.3531 1.3740 11 1 5.3988 4.6035 1.7616 12 8 3.6047 5.4930 2.2703 13 6 5.4339 6.6941 1.2440 14 7 6.0256 7.0565 2.5344 15 6 7.3885 6.6298 2.8609 16 6 5.3046 7.7939 3.4352 17 1 4.2252 7.7847 3.3999 18 6 5.9612 8.5533 4.3940 19 7 7.2490 8.7959 4.2727 20 14 5.0167 9.2308 5.8563 21 1 5.0539 8.2473 6.9683 22 1 5.6389 10.5039 6.3006 23 1 3.6067 9.4800 5.4626 24 6 4.2170 -0.0764 -0.0005 25 8 5.4355 -0.0836 -0.0013 26 7 3.5184 -1.2333 0.0051 27 1 3.9814 -2.0857 0.0093 28 6 2.1702 -1.1896 0.0049 29 6 1.3859 -2.4763 0.0105 30 1 -0.3634 0.0046 1.0276 31 1 -0.3634 0.8877 -0.5179 32 1 -0.3633 -0.8922 -0.5099 33 1 1.5197 3.4965 -0.5403 34 1 1.8370 2.7509 1.0445 35 1 1.7690 4.5230 0.8923 36 1 3.5082 5.6637 -0.3874 37 1 5.0403 4.8075 -0.6835 38 1 2.9490 6.1452 1.9879 39 1 6.2205 6.6107 0.4942 40 1 4.7235 7.4634 0.9413 41 1 8.0899 7.4214 2.5973 42 1 7.4585 6.4231 3.9288 43 1 7.6311 5.7276 2.2995 44 1 7.7078 9.3269 4.9424 45 1 2.0744 -3.3214 0.0139 46 1 0.7580 -2.5153 0.9007 47 1 0.7580 -2.5232 -0.8793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677160870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:51 Heat of formation + Delta-G solvation = -65.573749 kcal Electronic energy + Delta-G solvation = -30138.520849 eV Core-core repulsion = 25936.486234 eV Total energy + Delta-G solvation = -4202.034615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.91097 -40.79625 -39.22592 -38.80390 -36.85775 -36.66955 -35.75356 -34.08099 -33.32271 -31.33557 -29.99050 -28.20716 -28.04353 -27.75770 -26.54180 -25.56985 -24.46904 -23.33259 -22.18980 -21.05178 -19.83420 -19.22743 -18.78204 -17.89254 -17.57188 -17.38109 -17.05504 -16.80784 -16.69807 -16.19747 -16.11482 -15.27132 -15.15582 -15.08057 -15.00659 -14.90137 -14.46694 -14.12186 -13.93866 -13.89788 -13.79867 -13.58268 -13.28071 -13.07682 -12.80569 -12.77233 -12.68495 -12.59366 -12.51260 -12.36679 -12.26090 -12.13881 -12.04610 -11.87671 -11.80647 -11.35531 -11.23568 -10.59846 -10.31576 -9.61462 -9.06041 -8.66104 -7.77385 -5.26486 -0.95424 0.50826 1.23895 1.46202 1.50199 1.54490 1.57927 2.02877 2.52338 2.54725 2.90760 3.00434 3.34818 3.42027 3.55622 3.70326 3.76859 3.83325 4.06151 4.19115 4.43721 4.49536 4.56330 4.58869 4.64634 4.68247 4.74106 4.77193 4.92267 4.93103 4.93772 4.99210 5.08657 5.16143 5.20508 5.23832 5.27812 5.33089 5.53783 5.59173 5.60520 5.72377 6.29947 6.37154 6.43838 6.59187 7.03571 7.13566 7.18469 7.88279 8.36037 9.26787 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.002574 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.013156 B =10876.768095 C =11415.119066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.054 4.054 3 N -0.325 5.325 4 C -0.065 4.065 5 C 0.564 3.436 6 O -0.571 6.571 7 N -0.587 5.587 8 C 0.098 3.902 9 C 0.094 3.906 10 C 0.091 3.909 11 H 0.046 0.954 12 O -0.558 6.558 13 C 0.124 3.876 14 N -0.612 5.612 15 C 0.176 3.824 16 C -0.239 4.239 17 H 0.080 0.920 18 C -0.067 4.067 19 N -0.947 5.947 20 Si 0.971 3.029 21 H -0.296 1.296 22 H -0.297 1.297 23 H -0.260 1.260 24 C 0.487 3.513 25 O -0.546 6.546 26 N -0.566 5.566 27 H 0.437 0.563 28 C 0.197 3.803 29 C -0.130 4.130 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.377 0.623 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.016 0.984 44 H 0.245 0.755 45 H 0.097 0.903 46 H 0.128 0.872 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.103 -26.237 -13.564 38.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.184 4.184 3 N -0.043 5.043 4 C -0.225 4.225 5 C 0.352 3.648 6 O -0.450 6.450 7 N -0.318 5.318 8 C -0.044 4.044 9 C -0.029 4.029 10 C 0.028 3.972 11 H 0.064 0.936 12 O -0.364 6.364 13 C -0.003 4.003 14 N -0.335 5.335 15 C 0.030 3.970 16 C -0.370 4.370 17 H 0.098 0.902 18 C -0.261 4.261 19 N -0.595 5.595 20 Si 0.800 3.200 21 H -0.223 1.223 22 H -0.224 1.224 23 H -0.184 1.184 24 C 0.282 3.718 25 O -0.423 6.423 26 N -0.200 5.200 27 H 0.280 0.720 28 C 0.078 3.922 29 C -0.187 4.187 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.225 0.775 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.029 0.971 43 H 0.034 0.966 44 H 0.054 0.946 45 H 0.116 0.884 46 H 0.146 0.854 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.808 -25.745 -13.217 36.847 hybrid contribution 1.200 -0.028 0.799 1.442 sum -21.608 -25.774 -12.418 35.852 Atomic orbital electron populations 1.20701 0.83501 1.05376 1.04355 1.21160 1.00044 0.85365 1.11864 1.67954 1.06754 1.30507 0.99080 1.23094 0.89860 0.92543 1.16954 1.17667 0.85942 0.83715 0.77440 1.90838 1.15103 1.87096 1.51944 1.47627 1.11151 1.04316 1.68687 1.22161 0.76979 1.03382 1.01867 1.22223 0.98790 0.84779 0.97136 1.22723 0.87934 0.97401 0.89102 0.93626 1.86602 1.34964 1.63934 1.50851 1.21538 0.97031 0.94738 0.87021 1.44003 1.13275 1.60863 1.15315 1.20493 0.86211 0.93833 0.96437 1.19562 0.90872 1.18132 1.08390 0.90205 1.25891 0.97086 0.99623 1.03500 1.70250 1.10228 1.43232 1.35749 0.85188 0.78707 0.76563 0.79545 1.22321 1.22393 1.18369 1.19142 0.87866 0.85298 0.79457 1.91025 1.13901 1.86215 1.51180 1.43755 1.07547 1.11367 1.57376 0.71987 1.22580 0.82357 1.01253 0.86017 1.21595 1.00832 0.88543 1.07745 0.89568 0.90566 0.87152 0.90796 0.90312 0.90321 0.86099 0.90596 0.77454 0.93157 0.91092 0.97171 0.97145 0.96578 0.94606 0.88378 0.85385 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 9.65 71.23 0.69 0.50 16 2 C -0.05 -0.60 6.70 42.03 0.28 -0.32 16 3 N -0.32 -6.65 6.26 -169.24 -1.06 -7.71 16 4 C -0.06 -1.93 6.75 43.71 0.30 -1.63 16 5 C 0.56 21.14 7.64 86.69 0.66 21.80 16 6 O -0.57 -27.10 15.17 15.41 0.23 -26.86 16 7 N -0.59 -18.00 2.80 -850.62 -2.38 -20.38 16 8 C 0.10 2.13 8.80 127.77 1.12 3.25 16 9 C 0.09 2.88 5.03 86.38 0.43 3.32 16 10 C 0.09 3.55 3.48 30.59 0.11 3.66 16 11 H 0.05 2.22 8.14 -2.38 -0.02 2.21 16 12 O -0.56 -20.97 11.37 -148.98 -1.69 -22.66 16 13 C 0.12 5.26 5.33 86.38 0.46 5.72 16 14 N -0.61 -33.24 2.90 -726.92 -2.11 -35.35 16 15 C 0.18 9.93 8.99 127.77 1.15 11.07 16 16 C -0.24 -13.67 9.19 84.04 0.77 -12.90 16 17 H 0.08 4.30 7.56 -2.91 -0.02 4.27 16 18 C -0.07 -3.99 5.06 84.86 0.43 -3.56 16 19 N -0.95 -59.85 10.86 21.65 0.24 -59.62 16 20 Si 0.97 47.53 29.58 68.60 2.03 49.56 16 21 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 24 C 0.49 14.22 7.92 86.39 0.68 14.91 16 25 O -0.55 -21.90 16.42 14.60 0.24 -21.66 16 26 N -0.57 -8.05 5.29 -301.76 -1.60 -9.65 16 27 H 0.44 3.47 8.64 -92.71 -0.80 2.67 16 28 C 0.20 1.38 6.78 41.61 0.28 1.66 16 29 C -0.13 0.68 8.83 71.23 0.63 1.30 16 30 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.11 -0.53 6.43 -2.39 -0.02 -0.55 16 33 H 0.07 1.30 8.00 -2.39 -0.02 1.28 16 34 H 0.08 1.79 5.82 -2.39 -0.01 1.78 16 35 H 0.08 1.51 7.01 -2.39 -0.02 1.49 16 36 H 0.12 2.69 8.07 -2.39 -0.02 2.67 16 37 H 0.08 2.55 7.50 -2.38 -0.02 2.53 16 38 H 0.38 10.83 8.80 -74.06 -0.65 10.18 16 39 H 0.05 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.07 2.72 8.04 -2.39 -0.02 2.70 16 41 H 0.01 0.60 7.37 -2.39 -0.02 0.59 16 42 H 0.01 0.60 7.39 -2.39 -0.02 0.58 16 43 H 0.02 0.82 8.04 -2.39 -0.02 0.80 16 44 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.10 -0.73 7.90 -2.39 -0.02 -0.75 16 46 H 0.13 -1.04 8.09 -2.39 -0.02 -1.06 16 47 H 0.13 -1.22 7.37 -2.38 -0.02 -1.24 16 Total: -1.00 -98.94 384.95 1.47 -97.46 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -0.43 Total: 8.08 kcal Atomic # 6 Polarization: 40.79 SS G_CDS: 8.00 Total: 48.79 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -6.90 Total: -132.70 kcal Atomic # 8 Polarization: -69.97 SS G_CDS: -1.22 Total: -71.19 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -98.94 1.47 -97.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677160870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.891 kcal (2) G-P(sol) polarization free energy of solvation -98.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds