Wall clock time and date at job start Tue Mar 31 2020 20:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32172 * 119.14321 * 2 1 4 4 C 1.32363 * 120.60425 * 180.30792 * 3 2 1 5 5 C 1.47504 * 120.50673 * 179.72337 * 4 3 2 6 6 O 1.21597 * 119.99950 * 185.11719 * 5 4 3 7 7 N 1.34778 * 120.00045 * 5.11110 * 5 4 3 8 8 C 1.46505 * 119.99787 * 354.93832 * 7 5 4 9 9 C 1.46502 * 120.00035 * 174.93425 * 7 5 4 10 10 C 1.52994 * 109.46862 * 90.00048 * 9 7 5 11 11 H 1.08999 * 109.47414 * 305.00055 * 10 9 7 12 12 O 1.42901 * 109.46970 * 65.00620 * 10 9 7 13 13 C 1.53006 * 109.47052 * 184.99766 * 10 9 7 14 14 N 1.46500 * 109.47098 * 180.02562 * 13 10 9 15 15 C 1.46500 * 119.99942 * 269.99959 * 14 13 10 16 16 C 1.36933 * 120.00005 * 90.00384 * 14 13 10 17 17 H 1.08001 * 119.99692 * 327.91006 * 16 14 13 18 18 C 1.38811 * 120.00106 * 147.62710 * 16 14 13 19 19 N 1.31618 * 119.99849 * 168.21749 * 18 16 14 20 20 Si 1.86798 * 119.99922 * 348.21610 * 18 16 14 21 21 H 1.48501 * 109.46972 * 84.44802 * 20 18 16 22 22 H 1.48507 * 109.47239 * 204.44410 * 20 18 16 23 23 H 1.48500 * 109.47572 * 324.44561 * 20 18 16 24 24 C 1.46672 * 118.98369 * 359.45414 * 4 3 2 25 25 O 1.21861 * 120.78636 * 180.24593 * 24 4 3 26 26 N 1.35149 * 118.42963 * 0.27472 * 24 4 3 27 27 H 0.97008 * 120.36681 * 180.02562 * 26 24 4 28 28 C 1.34894 * 119.26554 * 359.97438 * 26 24 4 29 29 C 1.50705 * 119.49852 * 180.02562 * 28 26 24 30 30 H 1.09000 * 109.46529 * 270.24486 * 1 2 3 31 31 H 1.08996 * 109.47608 * 30.24801 * 1 2 3 32 32 H 1.09003 * 109.47167 * 150.25199 * 1 2 3 33 33 H 1.09004 * 109.46733 * 276.14596 * 8 7 5 34 34 H 1.08996 * 109.47171 * 36.15462 * 8 7 5 35 35 H 1.09001 * 109.46745 * 156.14936 * 8 7 5 36 36 H 1.08998 * 109.46634 * 330.00280 * 9 7 5 37 37 H 1.09000 * 109.47124 * 210.00616 * 9 7 5 38 38 H 0.96694 * 114.00699 * 59.99584 * 12 10 9 39 39 H 1.09007 * 109.46482 * 60.00353 * 13 10 9 40 40 H 1.08997 * 109.47503 * 300.00869 * 13 10 9 41 41 H 1.08995 * 109.47523 * 275.16834 * 15 14 13 42 42 H 1.08999 * 109.47167 * 35.17204 * 15 14 13 43 43 H 1.09008 * 109.46717 * 155.16381 * 15 14 13 44 44 H 0.97002 * 119.99972 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.47194 * 0.02562 * 29 28 26 46 46 H 1.09007 * 109.46687 * 120.00631 * 29 28 26 47 47 H 1.08998 * 109.47430 * 240.00082 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 -0.0061 5 6 4.1899 2.4777 -0.0122 6 8 5.4016 2.4998 -0.1118 7 7 3.5012 3.6315 0.0923 8 6 2.0363 3.6120 0.1004 9 6 4.2175 4.9051 0.1981 10 6 4.4573 5.4730 -1.2022 11 1 4.9755 4.7321 -1.8109 12 8 3.2031 5.7938 -1.8073 13 6 5.3124 6.7377 -1.1001 14 7 5.5415 7.2818 -2.4408 15 6 6.7074 6.8516 -3.2166 16 6 4.6660 8.1927 -2.9689 17 1 3.6180 8.1460 -2.7121 18 6 5.1264 9.1797 -3.8296 19 7 4.2699 9.9056 -4.5165 20 14 6.9613 9.4775 -4.0129 21 1 7.5193 8.5299 -5.0109 22 1 7.1934 10.8713 -4.4699 23 1 7.6301 9.2681 -2.7036 24 6 4.2170 -0.0763 -0.0007 25 8 5.4356 -0.0835 -0.0016 26 7 3.5185 -1.2332 0.0047 27 1 3.9815 -2.0857 0.0087 28 6 2.1702 -1.1895 0.0055 29 6 1.3860 -2.4764 0.0121 30 1 -0.3632 0.0044 1.0277 31 1 -0.3634 0.8877 -0.5176 32 1 -0.3634 -0.8923 -0.5099 33 1 1.6677 3.5858 -0.9251 34 1 1.6876 2.7282 0.6347 35 1 1.6638 4.5076 0.5976 36 1 5.1748 4.7434 0.6935 37 1 3.6222 5.6096 0.7789 38 1 2.6865 6.4488 -1.3184 39 1 6.2691 6.4930 -0.6384 40 1 4.7942 7.4786 -0.4912 41 1 7.5725 7.4523 -2.9358 42 1 6.9127 5.8009 -3.0115 43 1 6.5044 6.9813 -4.2797 44 1 4.5916 10.5951 -5.1183 45 1 2.0745 -3.3214 0.0160 46 1 0.7587 -2.5150 0.9027 47 1 0.7575 -2.5235 -0.8772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677160874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:56 Heat of formation + Delta-G solvation = -59.551824 kcal Electronic energy + Delta-G solvation = -30163.846426 eV Core-core repulsion = 25962.072941 eV Total energy + Delta-G solvation = -4201.773484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.93027 -40.80313 -39.24155 -38.89476 -36.95560 -36.73306 -35.77397 -34.08908 -33.67958 -31.61881 -30.05518 -28.49899 -28.08362 -27.75916 -26.63240 -25.58838 -24.54004 -23.34392 -22.18575 -21.06411 -19.84595 -19.23478 -18.90957 -17.89796 -17.60190 -17.49042 -17.26034 -17.03131 -16.67113 -16.22218 -16.05300 -15.77013 -15.20811 -15.14683 -15.04153 -14.76295 -14.39038 -14.26565 -14.21772 -14.15868 -13.88505 -13.78435 -13.67759 -13.27246 -13.17856 -12.78716 -12.70295 -12.60740 -12.36883 -12.28689 -12.15695 -12.03589 -12.03347 -11.98188 -11.53783 -11.38936 -11.24813 -10.72650 -10.24395 -9.61796 -9.07051 -8.71377 -8.10637 -5.51300 -0.97268 0.49354 1.23696 1.33126 1.39720 1.49039 1.52337 2.02608 2.45060 2.50678 2.89602 2.99041 3.14106 3.32511 3.41677 3.66495 3.73639 3.79747 4.00527 4.14076 4.39491 4.42420 4.48873 4.54889 4.56203 4.62084 4.64429 4.67097 4.73678 4.84892 4.90484 4.96263 4.98260 4.99906 5.08745 5.20180 5.20940 5.25890 5.30661 5.53425 5.63329 5.96365 6.23275 6.28501 6.42689 6.57984 6.89915 7.06354 7.11598 7.65251 8.04655 9.08872 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.002568 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.134188 B =10901.369116 C =11528.009039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.054 4.054 3 N -0.328 5.328 4 C -0.062 4.062 5 C 0.565 3.435 6 O -0.569 6.569 7 N -0.586 5.586 8 C 0.075 3.925 9 C 0.092 3.908 10 C 0.089 3.911 11 H 0.053 0.947 12 O -0.559 6.559 13 C 0.122 3.878 14 N -0.620 5.620 15 C 0.095 3.905 16 C -0.230 4.230 17 H 0.066 0.934 18 C -0.040 4.040 19 N -0.963 5.963 20 Si 0.956 3.044 21 H -0.281 1.281 22 H -0.313 1.313 23 H -0.266 1.266 24 C 0.490 3.510 25 O -0.543 6.543 26 N -0.565 5.565 27 H 0.438 0.562 28 C 0.199 3.801 29 C -0.131 4.131 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.046 0.954 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.376 0.624 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.019 0.981 42 H 0.051 0.949 43 H 0.040 0.960 44 H 0.259 0.741 45 H 0.099 0.901 46 H 0.131 0.869 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 -30.460 16.026 37.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.185 4.185 3 N -0.046 5.046 4 C -0.222 4.222 5 C 0.353 3.647 6 O -0.447 6.447 7 N -0.317 5.317 8 C -0.066 4.066 9 C -0.031 4.031 10 C 0.026 3.974 11 H 0.071 0.929 12 O -0.364 6.364 13 C -0.005 4.005 14 N -0.343 5.343 15 C -0.050 4.050 16 C -0.360 4.360 17 H 0.083 0.917 18 C -0.234 4.234 19 N -0.610 5.610 20 Si 0.786 3.214 21 H -0.208 1.208 22 H -0.242 1.242 23 H -0.191 1.191 24 C 0.285 3.715 25 O -0.421 6.421 26 N -0.199 5.199 27 H 0.281 0.719 28 C 0.079 3.921 29 C -0.187 4.187 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.224 0.776 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.149 0.851 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.122 -29.946 15.444 36.159 hybrid contribution 1.805 0.077 -0.371 1.844 sum -11.317 -29.869 15.073 35.319 Atomic orbital electron populations 1.20718 0.83637 1.05201 1.04577 1.21181 1.00045 0.85485 1.11750 1.67912 1.06883 1.29986 0.99793 1.23162 0.89803 0.92715 1.16522 1.17626 0.86057 0.83602 0.77404 1.90829 1.15039 1.87233 1.51638 1.47648 1.08992 1.04734 1.70345 1.22602 0.76316 1.05179 1.02535 1.22284 0.99006 0.84707 0.97136 1.22705 0.85438 0.96297 0.92985 0.92888 1.86602 1.31350 1.63970 1.54504 1.21616 0.98799 0.94354 0.85706 1.44113 1.27068 1.48636 1.14508 1.21494 0.89691 0.98133 0.95674 1.18895 0.90170 1.03594 1.23351 0.91675 1.26015 1.01053 0.96821 0.99478 1.69900 1.35203 1.25765 1.30121 0.85901 0.82506 0.74786 0.78171 1.20814 1.24176 1.19108 1.19058 0.87844 0.85167 0.79473 1.91023 1.13730 1.86188 1.51117 1.43744 1.07482 1.11408 1.57313 0.71884 1.22540 0.82407 1.01127 0.85984 1.21600 1.00857 0.88563 1.07725 0.88953 0.91012 0.87312 0.93562 0.86413 0.90059 0.90042 0.86485 0.77605 0.91831 0.90820 0.96275 0.93035 0.94170 0.93202 0.88265 0.85072 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 9.65 71.23 0.69 0.46 16 2 C -0.05 -0.60 6.70 42.03 0.28 -0.32 16 3 N -0.33 -6.69 6.01 -169.24 -1.02 -7.71 16 4 C -0.06 -1.80 6.85 43.71 0.30 -1.50 16 5 C 0.57 20.51 7.64 86.69 0.66 21.17 16 6 O -0.57 -25.79 15.15 15.47 0.23 -25.55 16 7 N -0.59 -17.80 2.84 -850.57 -2.41 -20.21 16 8 C 0.08 1.71 9.16 127.77 1.17 2.88 16 9 C 0.09 2.75 5.07 86.38 0.44 3.19 16 10 C 0.09 3.33 3.48 30.59 0.11 3.44 16 11 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 12 O -0.56 -22.00 11.77 -148.98 -1.75 -23.75 16 13 C 0.12 4.86 5.41 86.38 0.47 5.33 16 14 N -0.62 -31.12 2.60 -726.92 -1.89 -33.01 16 15 C 0.09 4.54 8.37 127.77 1.07 5.61 16 16 C -0.23 -13.40 9.54 84.03 0.80 -12.60 16 17 H 0.07 4.02 7.49 -2.91 -0.02 4.00 16 18 C -0.04 -2.43 5.35 84.86 0.45 -1.98 16 19 N -0.96 -62.53 13.97 21.65 0.30 -62.23 16 20 Si 0.96 49.83 23.99 68.60 1.65 51.48 16 21 H -0.28 -14.18 6.59 99.48 0.66 -13.53 16 22 H -0.31 -16.39 7.11 99.48 0.71 -15.69 16 23 H -0.27 -13.28 6.44 99.48 0.64 -12.64 16 24 C 0.49 13.57 7.93 86.39 0.68 14.25 16 25 O -0.54 -20.67 16.41 14.63 0.24 -20.43 16 26 N -0.56 -7.40 5.29 -301.76 -1.60 -8.99 16 27 H 0.44 2.92 8.64 -92.70 -0.80 2.12 16 28 C 0.20 1.27 6.78 41.61 0.28 1.55 16 29 C -0.13 0.73 8.83 71.24 0.63 1.36 16 30 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.11 -0.43 6.43 -2.39 -0.02 -0.44 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.12 2.36 4.98 -12.39 -0.06 2.29 16 35 H 0.08 1.46 7.82 -2.39 -0.02 1.44 16 36 H 0.08 2.57 7.50 -2.39 -0.02 2.55 16 37 H 0.12 2.62 7.85 -2.39 -0.02 2.60 16 38 H 0.38 12.29 9.02 -74.06 -0.67 11.62 16 39 H 0.06 2.35 8.07 -2.38 -0.02 2.33 16 40 H 0.07 2.73 8.04 -2.39 -0.02 2.71 16 41 H 0.02 0.90 5.26 -2.39 -0.01 0.89 16 42 H 0.05 2.24 8.11 -2.39 -0.02 2.22 16 43 H 0.04 2.05 6.05 -2.38 -0.01 2.03 16 44 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 45 H 0.10 -0.80 7.90 -2.39 -0.02 -0.82 16 46 H 0.13 -1.22 8.09 -2.38 -0.02 -1.24 16 47 H 0.13 -1.10 7.36 -2.39 -0.02 -1.12 16 Total: -1.00 -98.16 378.40 1.18 -96.98 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -0.61 Total: 10.58 kcal Atomic # 6 Polarization: 34.82 SS G_CDS: 8.03 Total: 42.85 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -6.61 Total: -132.15 kcal Atomic # 8 Polarization: -68.46 SS G_CDS: -1.28 Total: -69.74 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.65 Total: 51.48 kcal Total: -98.16 1.18 -96.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677160874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.430 kcal (2) G-P(sol) polarization free energy of solvation -98.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds