Wall clock time and date at job start Tue Mar 31 2020 22:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47000 * 2 1 4 4 N 1.30017 * 127.33468 * 269.99997 * 3 2 1 5 5 O 1.20659 * 112.29943 * 180.02562 * 4 3 2 6 6 C 1.33492 * 113.15584 * 359.75369 * 5 4 3 7 7 C 1.50698 * 126.82572 * 180.30133 * 6 5 4 8 8 C 1.37357 * 106.34439 * 0.39218 * 6 5 4 9 9 C 1.47396 * 128.56496 * 179.91274 * 8 6 5 10 10 O 1.21614 * 119.99886 * 269.67320 * 9 8 6 11 11 N 1.34772 * 120.00256 * 89.67436 * 9 8 6 12 12 C 1.46497 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47109 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.46831 * 64.99646 * 13 12 11 15 15 C 1.52998 * 109.47211 * 185.00004 * 13 12 11 16 16 N 1.46906 * 109.47010 * 305.00036 * 13 12 11 17 17 C 1.46898 * 110.99888 * 155.00014 * 16 13 12 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 13 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47480 * 120.00092 * 25 23 21 28 28 H 1.48497 * 109.47080 * 240.00247 * 25 23 21 29 29 H 1.09001 * 109.47192 * 59.99996 * 1 2 3 30 30 H 1.09000 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46968 * 300.00139 * 1 2 3 32 32 H 1.09000 * 109.46925 * 240.00379 * 2 1 3 33 33 H 1.09001 * 109.47192 * 120.00004 * 2 1 3 34 34 H 1.08998 * 109.47302 * 270.10659 * 7 6 5 35 35 H 1.09007 * 109.47306 * 30.10785 * 7 6 5 36 36 H 1.09005 * 109.46905 * 150.10531 * 7 6 5 37 37 H 0.97004 * 119.99971 * 0.02562 * 11 9 8 38 38 H 1.08993 * 109.47197 * 60.00229 * 12 11 9 39 39 H 1.08997 * 109.47140 * 299.99817 * 12 11 9 40 40 H 1.09001 * 109.47093 * 179.97438 * 15 13 12 41 41 H 1.09002 * 109.47121 * 299.99744 * 15 13 12 42 42 H 1.09002 * 109.46901 * 59.99641 * 15 13 12 43 43 H 1.00902 * 110.99923 * 278.95955 * 16 13 12 44 44 H 1.08995 * 109.47296 * 299.99911 * 17 16 13 45 45 H 1.08997 * 109.47334 * 60.00212 * 17 16 13 46 46 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 47 47 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2951 2.1643 -1.0338 5 8 2.6840 3.2628 -0.7208 6 6 2.7423 3.4422 0.6008 7 6 3.1760 4.6908 1.3245 8 6 2.3302 2.2618 1.1696 9 6 2.2101 1.9234 2.5992 10 8 3.1532 1.4319 3.1891 11 7 1.0551 2.1587 3.2526 12 6 0.9355 1.8218 4.6733 13 6 -0.4659 2.1862 5.1677 14 1 -1.2032 1.5639 4.6607 15 6 -0.5514 1.9512 6.6771 16 7 -0.7355 3.6006 4.8763 17 6 -2.1792 3.8502 4.7698 18 6 -2.4161 5.3081 4.4704 19 8 -1.4749 6.0647 4.3574 20 7 -3.6739 5.7710 4.3282 21 6 -3.8895 7.0974 4.0563 22 1 -3.0514 7.7711 3.9557 23 6 -5.1861 7.5746 3.9092 24 7 -6.2058 6.7546 4.0311 25 14 -5.4799 9.3817 3.5381 26 1 -4.1762 10.0874 3.4510 27 1 -6.2006 9.5110 2.2462 28 1 -6.2963 9.9834 4.6228 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2511 4.6538 1.5006 35 1 2.9371 5.5642 0.7176 36 1 2.6536 4.7575 2.2789 37 1 0.3027 2.5503 2.7820 38 1 1.6786 2.3800 5.2428 39 1 1.1016 0.7531 4.8086 40 1 -1.5496 2.2112 7.0293 41 1 -0.3513 0.9017 6.8933 42 1 0.1861 2.5736 7.1840 43 1 -0.3152 4.1995 5.5712 44 1 -2.5947 3.2424 3.9660 45 1 -2.6636 3.5888 5.7105 46 1 -4.4266 5.1660 4.4189 47 1 -7.1111 7.0877 3.9281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690647278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:43 Heat of formation + Delta-G solvation = -26.844508 kcal Electronic energy + Delta-G solvation = -29452.532395 eV Core-core repulsion = 25252.177206 eV Total energy + Delta-G solvation = -4200.355189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.96488 -39.68771 -38.48176 -36.99070 -35.47912 -34.21670 -33.87022 -33.60744 -31.54232 -31.34811 -30.75213 -28.29166 -26.78505 -26.33332 -24.84406 -24.06007 -23.58187 -21.11459 -20.69872 -19.89150 -19.37439 -18.07671 -17.91451 -17.82607 -16.53778 -16.38040 -15.97758 -15.60703 -15.19776 -14.89715 -14.72123 -14.53702 -14.33533 -14.02546 -13.89205 -13.50327 -13.39547 -13.35141 -13.17769 -12.95341 -12.71711 -12.66066 -12.53898 -12.25298 -11.84328 -11.80276 -11.69264 -11.64262 -11.47785 -11.11944 -11.08657 -11.04995 -10.38887 -10.29892 -10.28097 -10.05293 -9.57840 -9.47720 -9.11361 -8.57992 -8.19683 -8.02533 -6.47707 -3.88697 1.21307 1.78900 2.34437 2.71439 3.12162 3.23418 3.24335 3.30169 3.83235 3.89552 3.99444 4.11018 4.23321 4.67220 4.68601 4.79739 4.88536 4.92117 4.98472 5.04786 5.08023 5.13959 5.20714 5.22013 5.25690 5.40726 5.42830 5.54763 5.57139 5.61356 5.66052 5.67328 5.76123 5.80291 5.81204 5.91656 5.95124 5.97506 6.18547 6.34540 7.04871 7.45623 7.49737 7.50657 8.00021 8.09919 8.10703 8.54230 9.11929 9.47649 9.98350 10.69903 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.002804 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.961509 B = 9984.789898 C =11119.998764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.057 3.943 4 N -0.356 5.356 5 O 0.095 5.905 6 C 0.027 3.973 7 C -0.081 4.081 8 C -0.253 4.253 9 C 0.600 3.400 10 O -0.537 6.537 11 N -0.698 5.698 12 C 0.133 3.867 13 C 0.068 3.932 14 H 0.085 0.915 15 C -0.181 4.181 16 N -0.664 5.664 17 C 0.050 3.950 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.412 0.588 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.354 0.646 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.928 -13.399 -2.032 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.106 4.106 4 N -0.062 5.062 5 O 0.034 5.966 6 C -0.036 4.036 7 C -0.139 4.139 8 C -0.261 4.261 9 C 0.384 3.616 10 O -0.414 6.414 11 N -0.349 5.349 12 C 0.009 3.991 13 C -0.043 4.043 14 H 0.103 0.897 15 C -0.240 4.240 16 N -0.297 5.297 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.174 0.826 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.046 -13.411 -3.682 19.068 hybrid contribution -1.491 0.575 1.374 2.108 sum 11.555 -12.836 -2.308 17.424 Atomic orbital electron populations 1.21739 0.93353 1.02592 1.02820 1.19993 0.96776 0.87576 1.04112 1.24712 1.00599 0.98674 0.86588 1.73594 1.16569 0.92585 1.23417 1.84533 1.62760 1.26638 1.22714 1.24679 0.98016 0.97337 0.83583 1.20522 1.02920 0.90629 0.99797 1.21862 1.13639 0.95265 0.95291 1.16831 0.82831 0.78085 0.83872 1.90806 1.38476 1.44079 1.68089 1.45786 1.14912 1.62923 1.11257 1.21403 0.96829 1.00034 0.80832 1.21858 0.96409 0.91173 0.94895 0.89726 1.22430 1.02721 1.02584 0.96264 1.60181 1.11581 1.03224 1.54668 1.21718 0.88885 0.96944 1.00756 1.19784 0.83998 0.88876 0.84898 1.90526 1.41910 1.58157 1.56140 1.41876 1.05860 1.10234 1.61942 1.19744 0.93355 0.84836 1.44980 0.87856 1.25263 0.95033 1.00222 0.97372 1.69618 0.99096 1.35533 1.49963 0.85811 0.78625 0.82054 0.77939 1.19184 1.20701 1.20751 0.92104 0.91373 0.92093 0.89602 0.89445 0.88788 0.88869 0.88229 0.75145 0.91218 0.91113 0.91865 0.91808 0.91922 0.82608 0.89698 0.93657 0.77499 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.05 -0.45 6.55 -27.88 -0.18 -0.63 16 3 C 0.06 0.71 6.84 -79.76 -0.55 0.16 16 4 N -0.36 -4.82 12.01 34.78 0.42 -4.40 16 5 O 0.09 1.22 11.06 18.65 0.21 1.43 16 6 C 0.03 0.33 7.55 -34.63 -0.26 0.07 16 7 C -0.08 -0.75 10.33 36.00 0.37 -0.38 16 8 C -0.25 -3.27 6.24 -102.90 -0.64 -3.91 16 9 C 0.60 8.01 7.60 -12.53 -0.10 7.92 16 10 O -0.54 -8.73 17.11 5.27 0.09 -8.64 16 11 N -0.70 -8.06 5.38 -61.39 -0.33 -8.39 16 12 C 0.13 1.38 5.37 -4.04 -0.02 1.36 16 13 C 0.07 0.67 2.75 -67.71 -0.19 0.48 16 14 H 0.08 0.78 7.80 -51.93 -0.40 0.38 16 15 C -0.18 -1.55 9.16 37.16 0.34 -1.21 16 16 N -0.66 -8.85 5.31 -107.99 -0.57 -9.43 16 17 C 0.05 0.76 5.97 -4.97 -0.03 0.73 16 18 C 0.44 9.59 7.82 -10.98 -0.09 9.50 16 19 O -0.58 -14.76 15.78 5.55 0.09 -14.67 16 20 N -0.56 -13.54 5.29 -10.96 -0.06 -13.59 16 21 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 22 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -23.85 13.05 55.50 0.72 -23.13 16 25 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.41 4.83 8.12 -40.82 -0.33 4.50 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 43 H 0.35 5.11 8.17 -39.29 -0.32 4.79 16 44 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 45 H 0.05 0.63 7.44 -51.93 -0.39 0.25 16 46 H 0.39 9.04 7.90 -40.82 -0.32 8.71 16 47 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 405.18 15.07 6.11 6.11 Total: -1.00 -32.47 405.18 -6.72 -39.18 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -7.15 Total: 14.55 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.21 Total: 5.48 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.18 Total: -58.94 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.38 Total: -21.88 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.47 -6.72 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690647278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.340 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds