Wall clock time and date at job start Tue Mar 31 2020 22:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47000 * 2 1 4 4 N 1.30017 * 127.33468 * 269.99997 * 3 2 1 5 5 O 1.20659 * 112.29943 * 180.02562 * 4 3 2 6 6 C 1.33492 * 113.15584 * 359.75369 * 5 4 3 7 7 C 1.50698 * 126.82572 * 180.30133 * 6 5 4 8 8 C 1.37357 * 106.34439 * 0.39218 * 6 5 4 9 9 C 1.47396 * 128.56496 * 179.91274 * 8 6 5 10 10 O 1.21614 * 119.99886 * 269.67320 * 9 8 6 11 11 N 1.34772 * 120.00256 * 89.67436 * 9 8 6 12 12 C 1.46497 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47109 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.46831 * 64.99646 * 13 12 11 15 15 C 1.52998 * 109.47211 * 185.00004 * 13 12 11 16 16 N 1.46906 * 109.47010 * 305.00036 * 13 12 11 17 17 C 1.46898 * 110.99888 * 155.00014 * 16 13 12 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 13 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47480 * 120.00092 * 25 23 21 28 28 H 1.48497 * 109.47080 * 240.00247 * 25 23 21 29 29 H 1.09001 * 109.47192 * 59.99996 * 1 2 3 30 30 H 1.09000 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46968 * 300.00139 * 1 2 3 32 32 H 1.09000 * 109.46925 * 240.00379 * 2 1 3 33 33 H 1.09001 * 109.47192 * 120.00004 * 2 1 3 34 34 H 1.08998 * 109.47302 * 270.10659 * 7 6 5 35 35 H 1.09007 * 109.47306 * 30.10785 * 7 6 5 36 36 H 1.09005 * 109.46905 * 150.10531 * 7 6 5 37 37 H 0.97004 * 119.99971 * 0.02562 * 11 9 8 38 38 H 1.08993 * 109.47197 * 60.00229 * 12 11 9 39 39 H 1.08997 * 109.47140 * 299.99817 * 12 11 9 40 40 H 1.09001 * 109.47093 * 179.97438 * 15 13 12 41 41 H 1.09002 * 109.47121 * 299.99744 * 15 13 12 42 42 H 1.09002 * 109.46901 * 59.99641 * 15 13 12 43 43 H 1.00902 * 110.99923 * 278.95955 * 16 13 12 44 44 H 1.08995 * 109.47296 * 299.99911 * 17 16 13 45 45 H 1.08997 * 109.47334 * 60.00212 * 17 16 13 46 46 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 47 47 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2951 2.1643 -1.0338 5 8 2.6840 3.2628 -0.7208 6 6 2.7423 3.4422 0.6008 7 6 3.1760 4.6908 1.3245 8 6 2.3302 2.2618 1.1696 9 6 2.2101 1.9234 2.5992 10 8 3.1532 1.4319 3.1891 11 7 1.0551 2.1587 3.2526 12 6 0.9355 1.8218 4.6733 13 6 -0.4659 2.1862 5.1677 14 1 -1.2032 1.5639 4.6607 15 6 -0.5514 1.9512 6.6771 16 7 -0.7355 3.6006 4.8763 17 6 -2.1792 3.8502 4.7698 18 6 -2.4161 5.3081 4.4704 19 8 -1.4749 6.0647 4.3574 20 7 -3.6739 5.7710 4.3282 21 6 -3.8895 7.0974 4.0563 22 1 -3.0514 7.7711 3.9557 23 6 -5.1861 7.5746 3.9092 24 7 -6.2058 6.7546 4.0311 25 14 -5.4799 9.3817 3.5381 26 1 -4.1762 10.0874 3.4510 27 1 -6.2006 9.5110 2.2462 28 1 -6.2963 9.9834 4.6228 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2511 4.6538 1.5006 35 1 2.9371 5.5642 0.7176 36 1 2.6536 4.7575 2.2789 37 1 0.3027 2.5503 2.7820 38 1 1.6786 2.3800 5.2428 39 1 1.1016 0.7531 4.8086 40 1 -1.5496 2.2112 7.0293 41 1 -0.3513 0.9017 6.8933 42 1 0.1861 2.5736 7.1840 43 1 -0.3152 4.1995 5.5712 44 1 -2.5947 3.2424 3.9660 45 1 -2.6636 3.5888 5.7105 46 1 -4.4266 5.1660 4.4189 47 1 -7.1111 7.0877 3.9281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690647278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:42 Heat of formation + Delta-G solvation = -50.836860 kcal Electronic energy + Delta-G solvation = -29453.572781 eV Core-core repulsion = 25252.177206 eV Total energy + Delta-G solvation = -4201.395575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.93241 -40.73892 -40.11344 -38.13490 -36.35201 -35.94993 -35.07495 -34.56698 -33.24722 -32.38352 -31.84827 -29.15278 -27.94004 -27.57210 -25.84606 -25.48832 -24.51940 -22.00292 -21.65854 -21.08481 -20.79053 -19.89879 -19.00744 -18.82116 -17.81423 -17.39868 -17.19682 -16.75455 -16.52950 -16.29319 -15.92887 -15.68004 -15.53466 -15.17447 -15.08107 -14.69522 -14.36194 -14.31250 -14.16327 -13.74189 -13.70245 -13.64078 -13.51942 -13.42125 -13.33571 -13.06874 -12.77824 -12.59678 -12.53541 -12.48132 -12.37379 -12.10988 -11.90094 -11.87699 -11.48787 -11.35106 -11.01694 -10.43493 -10.30535 -10.09517 -9.98327 -9.32586 -8.45222 -5.93034 0.26082 0.83497 1.30788 1.37284 1.43158 1.56329 1.78232 2.09547 2.28775 2.31265 2.91214 3.04593 3.21328 3.23123 3.55043 3.77368 3.85851 3.90384 4.09705 4.13736 4.25468 4.30905 4.34403 4.37131 4.38858 4.51711 4.54659 4.63594 4.64724 4.68151 4.79088 4.85723 4.91590 4.92569 5.00973 5.02563 5.05393 5.25360 5.27810 5.40434 5.43356 5.90859 6.11645 6.39695 6.45987 6.62671 7.08871 7.14664 7.15671 7.60356 8.15400 8.72243 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.002804 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.961509 B = 9984.789898 C =11119.998764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.057 3.943 4 N -0.377 5.377 5 O 0.086 5.914 6 C 0.031 3.969 7 C -0.081 4.081 8 C -0.275 4.275 9 C 0.605 3.395 10 O -0.570 6.570 11 N -0.689 5.689 12 C 0.134 3.866 13 C 0.076 3.924 14 H 0.100 0.900 15 C -0.176 4.176 16 N -0.673 5.673 17 C 0.066 3.934 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.988 3.012 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.413 0.587 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.347 0.653 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.396 0.604 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.433 -14.425 -1.668 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.106 4.106 4 N -0.085 5.085 5 O 0.027 5.973 6 C -0.033 4.033 7 C -0.138 4.138 8 C -0.283 4.283 9 C 0.390 3.610 10 O -0.450 6.450 11 N -0.338 5.338 12 C 0.010 3.990 13 C -0.034 4.034 14 H 0.118 0.882 15 C -0.235 4.235 16 N -0.306 5.306 17 C -0.066 4.066 18 C 0.226 3.774 19 O -0.507 6.507 20 N -0.212 5.212 21 C -0.459 4.459 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.812 3.188 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.249 0.751 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.166 0.834 44 H 0.124 0.876 45 H 0.086 0.914 46 H 0.230 0.770 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.527 -14.449 -3.309 19.408 hybrid contribution -1.272 0.861 1.282 2.001 sum 11.255 -13.588 -2.027 17.760 Atomic orbital electron populations 1.21717 0.92409 1.03803 1.02106 1.20139 0.97493 0.86045 1.04832 1.25196 0.99641 0.99618 0.86118 1.73578 1.17786 0.93039 1.24101 1.84506 1.63020 1.26641 1.23110 1.25160 0.96857 0.97951 0.83336 1.20650 1.03842 0.90049 0.99239 1.21975 1.14986 0.95984 0.95332 1.16831 0.82718 0.77553 0.83904 1.90785 1.39563 1.45856 1.68792 1.45785 1.14290 1.61995 1.11723 1.21500 0.96910 1.00722 0.79854 1.21872 0.96320 0.89048 0.96134 0.88213 1.22379 1.02539 1.03809 0.94807 1.60152 1.10176 1.05180 1.55047 1.21560 0.90521 0.92061 1.02474 1.20932 0.82655 0.91383 0.82416 1.90501 1.42903 1.60149 1.57121 1.41946 1.06891 1.09486 1.62925 1.19671 0.93181 0.86171 1.46916 0.90341 1.25970 0.94479 1.03954 0.96811 1.69672 0.99407 1.36942 1.50158 0.84934 0.78185 0.77463 0.78175 1.19751 1.19820 1.19769 0.93015 0.89201 0.92548 0.88566 0.88978 0.87014 0.87351 0.89033 0.75087 0.92055 0.89705 0.92049 0.89894 0.92196 0.83406 0.87583 0.91446 0.77041 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 71.98 0.71 -1.52 16 2 C -0.05 -0.86 6.55 29.85 0.20 -0.66 16 3 C 0.06 1.40 6.84 45.16 0.31 1.71 16 4 N -0.38 -10.19 12.01 -44.77 -0.54 -10.73 16 5 O 0.09 2.22 11.06 77.00 0.85 3.07 16 6 C 0.03 0.73 7.55 25.48 0.19 0.92 16 7 C -0.08 -1.44 10.33 71.24 0.74 -0.70 16 8 C -0.28 -7.04 6.24 -18.75 -0.12 -7.16 16 9 C 0.61 15.85 7.60 86.66 0.66 16.50 16 10 O -0.57 -18.32 17.11 -4.08 -0.07 -18.39 16 11 N -0.69 -15.11 5.38 -466.41 -2.51 -17.63 16 12 C 0.13 2.52 5.37 86.38 0.46 2.99 16 13 C 0.08 1.31 2.75 44.92 0.12 1.43 16 14 H 0.10 1.48 7.80 -2.39 -0.02 1.46 16 15 C -0.18 -2.54 9.16 71.98 0.66 -1.88 16 16 N -0.67 -16.84 5.31 -495.56 -2.63 -19.48 16 17 C 0.07 1.90 5.97 85.56 0.51 2.41 16 18 C 0.44 19.05 7.82 87.66 0.69 19.74 16 19 O -0.62 -31.81 15.78 -3.05 -0.05 -31.86 16 20 N -0.58 -27.80 5.29 -306.99 -1.62 -29.42 16 21 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 22 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 23 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 24 N -0.92 -48.33 13.05 21.66 0.28 -48.05 16 25 Si 0.99 41.94 29.55 68.60 2.03 43.97 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.09 1.81 8.11 -2.38 -0.02 1.79 16 37 H 0.41 9.17 8.12 -92.70 -0.75 8.42 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 0.94 7.45 -2.39 -0.02 0.92 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 43 H 0.35 9.66 8.17 -89.69 -0.73 8.93 16 44 H 0.11 2.66 8.05 -2.39 -0.02 2.64 16 45 H 0.07 1.69 7.44 -2.39 -0.02 1.67 16 46 H 0.40 18.18 7.90 -92.71 -0.73 17.45 16 47 H 0.28 13.61 8.31 -92.70 -0.77 12.84 16 Total: -1.00 -70.75 405.18 0.95 -69.79 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -1.20 Total: 42.36 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 6.41 Total: 16.36 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -7.02 Total: -125.31 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: 0.73 Total: -47.18 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.75 0.95 -69.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690647278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.958 kcal (2) G-P(sol) polarization free energy of solvation -70.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds