Wall clock time and date at job start Tue Mar 31 2020 21:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29950 * 125.30515 * 2 1 4 4 O 1.41882 * 107.41435 * 180.24723 * 3 2 1 5 5 N 1.41874 * 106.38431 * 359.71741 * 4 3 2 6 6 C 1.29950 * 107.41665 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.30457 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47303 * 90.02391 * 7 6 5 9 9 O 1.21279 * 119.99869 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99871 * 180.02562 * 8 7 6 11 11 C 1.46926 * 120.63302 * 359.97438 * 10 8 7 12 12 C 1.53198 * 108.77303 * 126.37016 * 11 10 8 13 13 C 1.53041 * 109.31118 * 54.63887 * 12 11 10 14 14 C 1.53037 * 109.53935 * 298.63388 * 13 12 11 15 15 H 1.09008 * 109.49718 * 301.38387 * 14 13 12 16 16 N 1.46492 * 109.50014 * 181.31858 * 14 13 12 17 17 C 1.36937 * 120.00060 * 300.00065 * 16 14 13 18 18 H 1.08001 * 119.99752 * 322.44801 * 17 16 14 19 19 C 1.38811 * 120.00482 * 142.45111 * 17 16 14 20 20 N 1.31617 * 120.00509 * 157.48655 * 19 17 16 21 21 Si 1.86798 * 119.99859 * 337.48785 * 19 17 16 22 22 H 1.48496 * 109.47306 * 95.35556 * 21 19 17 23 23 H 1.48492 * 109.47455 * 215.35886 * 21 19 17 24 24 H 1.48506 * 109.47177 * 335.35869 * 21 19 17 25 25 C 1.46502 * 120.00309 * 119.99736 * 16 14 13 26 26 C 1.53001 * 109.46898 * 86.26778 * 25 16 14 27 27 O 1.42894 * 109.47258 * 66.24495 * 26 25 16 28 28 C 1.46923 * 120.63022 * 179.71990 * 10 8 7 29 29 H 1.09008 * 109.47136 * 270.22932 * 1 2 3 30 30 H 1.09003 * 109.47339 * 30.22556 * 1 2 3 31 31 H 1.08999 * 109.47230 * 150.23311 * 1 2 3 32 32 H 1.08999 * 109.46973 * 210.02714 * 7 6 5 33 33 H 1.08998 * 109.46973 * 330.02345 * 7 6 5 34 34 H 1.08998 * 109.58955 * 246.16196 * 11 10 8 35 35 H 1.09002 * 109.58424 * 6.44529 * 11 10 8 36 36 H 1.09001 * 109.49401 * 174.58478 * 12 11 10 37 37 H 1.09000 * 109.49981 * 294.68561 * 12 11 10 38 38 H 1.09005 * 109.46062 * 58.65526 * 13 12 11 39 39 H 1.08999 * 109.45890 * 178.62855 * 13 12 11 40 40 H 0.97001 * 120.00250 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.47433 * 206.26732 * 25 16 14 42 42 H 1.09003 * 109.47195 * 326.26896 * 25 16 14 43 43 H 1.09007 * 109.47029 * 186.24596 * 26 25 16 44 44 H 1.09001 * 109.47143 * 306.24156 * 26 25 16 45 45 H 0.96708 * 114.00178 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.58695 * 353.41730 * 28 10 8 47 47 H 1.09011 * 109.58911 * 113.83699 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 -0.0058 5 7 3.5709 -0.7936 -0.0025 6 6 2.3212 -1.1498 0.0051 7 6 1.8208 -2.5714 0.0115 8 6 1.6611 -3.0413 1.4344 9 8 1.9269 -2.2952 2.3529 10 7 1.2228 -4.2906 1.6862 11 6 0.8962 -5.2058 0.5842 12 6 1.6766 -6.5098 0.7785 13 6 1.3828 -7.0727 2.1709 14 6 1.8412 -6.0724 3.2346 15 1 2.9076 -5.8795 3.1170 16 7 1.5884 -6.6256 4.5673 17 6 0.3118 -6.9470 4.9443 18 1 -0.5150 -6.3239 4.6370 19 6 0.0804 -8.0735 5.7216 20 7 -1.0150 -8.1596 6.4461 21 14 1.3239 -9.4674 5.7395 22 1 2.2381 -9.3005 6.8977 23 1 0.6113 -10.7651 5.8544 24 1 2.1110 -9.4448 4.4804 25 6 2.7013 -6.8350 5.4967 26 6 2.9666 -5.5440 6.2738 27 8 1.8501 -5.2586 7.1187 28 6 1.0678 -4.7653 3.0680 29 1 -0.3634 0.0041 1.0277 30 1 -0.3634 0.8880 -0.5173 31 1 -0.3633 -0.8920 -0.5102 32 1 0.8582 -2.6199 -0.4975 33 1 2.5371 -3.2110 -0.5041 34 1 -0.1733 -5.4159 0.5883 35 1 1.1751 -4.7486 -0.3652 36 1 1.3711 -7.2326 0.0220 37 1 2.7444 -6.3123 0.6837 38 1 0.3117 -7.2467 2.2737 39 1 1.9178 -8.0132 2.3027 40 1 -1.1765 -8.9467 6.9895 41 1 2.4470 -7.6332 6.1942 42 1 3.5947 -7.1124 4.9372 43 1 3.8623 -5.6643 6.8834 44 1 3.1118 -4.7216 5.5733 45 1 1.9495 -4.4520 7.6428 46 1 1.4621 -4.0185 3.7573 47 1 0.0124 -4.9387 3.2787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692043584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:11 Heat of formation + Delta-G solvation = 40.549646 kcal Electronic energy + Delta-G solvation = -30719.693209 eV Core-core repulsion = 26522.260450 eV Total energy + Delta-G solvation = -4197.432759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75874 -40.10669 -37.83001 -36.39246 -34.85952 -34.75463 -33.63484 -32.37622 -31.56177 -30.57884 -29.41689 -28.96489 -27.51545 -25.18698 -24.16197 -22.85951 -22.36689 -21.52667 -20.99757 -19.79205 -18.89489 -17.51758 -17.10011 -16.71026 -16.61336 -16.13879 -15.66597 -15.58729 -15.25886 -14.73245 -14.47751 -14.28173 -14.18409 -13.87095 -13.71391 -13.62093 -13.30056 -13.20442 -13.04443 -12.83992 -12.59535 -12.37853 -12.36606 -12.00711 -11.94908 -11.80815 -11.42855 -11.14624 -11.11110 -10.91583 -10.84289 -10.79862 -10.47417 -10.40570 -10.11345 -9.85025 -9.77768 -9.54377 -9.13174 -8.65130 -8.38078 -6.84059 -5.92678 -3.34457 0.32910 1.69003 2.41382 2.48812 2.83828 3.06672 3.32933 3.46397 3.49112 3.59080 4.20711 4.35412 4.47472 4.55567 4.67023 4.77140 4.92044 4.93315 5.01361 5.06445 5.08263 5.11689 5.21528 5.32309 5.43422 5.51729 5.54601 5.62810 5.77246 5.83541 5.93809 5.98438 6.08418 6.10589 6.16523 6.32824 6.36600 6.44746 6.58738 6.70689 6.71222 6.84333 6.95038 7.42136 8.05165 8.09402 8.39547 8.48242 8.97415 9.75900 10.11776 11.22914 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.003076 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.676687 B = 9100.129312 C = 9602.852620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.088 3.912 3 N -0.280 5.280 4 O 0.025 5.975 5 N -0.263 5.263 6 C 0.098 3.902 7 C -0.081 4.081 8 C 0.517 3.483 9 O -0.536 6.536 10 N -0.600 5.600 11 C 0.104 3.896 12 C -0.134 4.134 13 C -0.128 4.128 14 C 0.169 3.831 15 H 0.052 0.948 16 N -0.589 5.589 17 C -0.253 4.253 18 H 0.076 0.924 19 C 0.045 3.955 20 N -0.896 5.896 21 Si 0.872 3.128 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.133 3.867 26 C 0.061 3.939 27 O -0.537 6.537 28 C 0.104 3.896 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.261 0.739 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.023 0.977 44 H 0.032 0.968 45 H 0.355 0.645 46 H 0.086 0.914 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 8.745 -16.246 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 N -0.026 5.026 4 O -0.116 6.116 5 N -0.005 5.005 6 C -0.085 4.085 7 C -0.122 4.122 8 C 0.302 3.698 9 O -0.413 6.413 10 N -0.333 5.333 11 C -0.019 4.019 12 C -0.172 4.172 13 C -0.168 4.168 14 C 0.061 3.939 15 H 0.070 0.930 16 N -0.311 5.311 17 C -0.381 4.381 18 H 0.094 0.906 19 C -0.156 4.156 20 N -0.537 5.537 21 Si 0.703 3.297 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.007 3.993 26 C -0.020 4.020 27 O -0.339 6.339 28 C -0.019 4.019 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.041 0.959 44 H 0.051 0.949 45 H 0.198 0.802 46 H 0.104 0.896 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.258 9.296 -15.906 18.909 hybrid contribution 0.420 -0.870 0.444 1.063 sum 4.678 8.427 -15.462 18.220 Atomic orbital electron populations 1.20601 0.84206 1.05011 1.05341 1.24511 1.00327 0.88826 0.95785 1.79901 0.89072 1.19579 1.14027 1.93383 1.20222 1.13358 1.84610 1.79906 1.17383 0.91352 1.11888 1.23799 0.90023 0.97791 0.96917 1.20434 1.04772 0.88965 0.98058 1.19920 0.77930 0.82254 0.89708 1.90763 1.50249 1.54144 1.46180 1.48204 1.64486 1.11755 1.08834 1.21850 1.00578 0.90739 0.88746 1.21953 1.00024 0.96074 0.99188 1.21979 1.03416 0.99204 0.92179 1.20523 0.96214 0.91218 0.85986 0.93017 1.44005 1.04662 1.74138 1.08257 1.18475 0.83187 1.05413 1.31025 0.90607 1.25331 0.95421 0.97412 0.97428 1.69878 1.27634 1.28988 1.27189 0.87024 0.81646 0.83085 0.77987 1.21668 1.23177 1.19511 1.21366 0.90567 0.95125 0.92262 1.22889 0.87510 0.99260 0.92341 1.86893 1.41837 1.46077 1.59046 1.22273 1.02625 0.97489 0.79495 0.88152 0.89088 0.88877 0.85510 0.85819 0.90569 0.90436 0.90930 0.92068 0.90447 0.92072 0.92953 0.91524 0.93225 0.95892 0.94936 0.80171 0.89609 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.23 36.00 0.37 -0.21 16 2 C 0.09 0.93 7.19 -82.38 -0.59 0.34 16 3 N -0.28 -3.70 12.98 33.74 0.44 -3.26 16 4 O 0.03 0.38 13.71 12.02 0.16 0.54 16 5 N -0.26 -3.68 12.98 33.74 0.44 -3.24 16 6 C 0.10 1.11 5.68 -82.38 -0.47 0.65 16 7 C -0.08 -0.68 4.39 -29.03 -0.13 -0.80 16 8 C 0.52 6.71 7.69 -10.99 -0.08 6.63 16 9 O -0.54 -9.47 15.45 5.56 0.09 -9.38 16 10 N -0.60 -7.71 2.98 -173.01 -0.52 -8.22 16 11 C 0.10 0.96 6.35 -3.71 -0.02 0.93 16 12 C -0.13 -1.43 6.08 -26.61 -0.16 -1.60 16 13 C -0.13 -2.02 5.11 -26.69 -0.14 -2.16 16 14 C 0.17 3.01 2.77 -68.02 -0.19 2.82 16 15 H 0.05 0.90 7.85 -51.92 -0.41 0.49 16 16 N -0.59 -12.96 1.99 -165.76 -0.33 -13.29 16 17 C -0.25 -6.58 8.41 -15.06 -0.13 -6.71 16 18 H 0.08 2.15 6.89 -52.49 -0.36 1.78 16 19 C 0.04 1.24 5.28 -17.43 -0.09 1.15 16 20 N -0.90 -26.89 13.97 55.49 0.78 -26.11 16 21 Si 0.87 21.62 25.06 -169.99 -4.26 17.36 16 22 H -0.29 -7.17 6.67 56.52 0.38 -6.79 16 23 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.13 2.81 4.72 -4.04 -0.02 2.79 16 26 C 0.06 1.16 7.38 37.16 0.27 1.43 16 27 O -0.54 -11.46 13.36 -35.23 -0.47 -11.94 16 28 C 0.10 1.78 5.75 -3.92 -0.02 1.75 16 29 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.32 7.13 -51.93 -0.37 -0.05 16 32 H 0.13 0.52 6.93 -51.93 -0.36 0.16 16 33 H 0.12 0.80 7.69 -51.93 -0.40 0.40 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.36 7.70 -51.93 -0.40 0.96 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.59 3.47 -51.93 -0.18 1.41 16 42 H 0.05 0.92 8.00 -51.93 -0.42 0.51 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.35 5.67 9.12 45.56 0.42 6.09 16 46 H 0.09 1.68 7.01 -51.93 -0.36 1.32 16 47 H 0.08 1.52 6.78 -51.92 -0.35 1.17 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -36.25 378.35 -5.42 -41.67 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.04 Total: 3.15 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.40 Total: 7.02 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.81 Total: -54.12 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.22 Total: -20.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.26 Total: 17.36 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.25 -5.42 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692043584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.217 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds