Wall clock time and date at job start Tue Mar 31 2020 21:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29950 * 125.30515 * 2 1 4 4 O 1.41882 * 107.41435 * 180.24723 * 3 2 1 5 5 N 1.41874 * 106.38431 * 359.71741 * 4 3 2 6 6 C 1.29950 * 107.41665 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.30457 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47303 * 90.02391 * 7 6 5 9 9 O 1.21279 * 119.99869 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99871 * 180.02562 * 8 7 6 11 11 C 1.46926 * 120.63302 * 359.97438 * 10 8 7 12 12 C 1.53198 * 108.77303 * 126.37016 * 11 10 8 13 13 C 1.53041 * 109.31118 * 54.63887 * 12 11 10 14 14 C 1.53037 * 109.53935 * 298.63388 * 13 12 11 15 15 H 1.09008 * 109.49718 * 301.38387 * 14 13 12 16 16 N 1.46492 * 109.50014 * 181.31858 * 14 13 12 17 17 C 1.36937 * 120.00060 * 300.00065 * 16 14 13 18 18 H 1.08001 * 119.99752 * 322.44801 * 17 16 14 19 19 C 1.38811 * 120.00482 * 142.45111 * 17 16 14 20 20 N 1.31617 * 120.00509 * 157.48655 * 19 17 16 21 21 Si 1.86798 * 119.99859 * 337.48785 * 19 17 16 22 22 H 1.48496 * 109.47306 * 95.35556 * 21 19 17 23 23 H 1.48492 * 109.47455 * 215.35886 * 21 19 17 24 24 H 1.48506 * 109.47177 * 335.35869 * 21 19 17 25 25 C 1.46502 * 120.00309 * 119.99736 * 16 14 13 26 26 C 1.53001 * 109.46898 * 86.26778 * 25 16 14 27 27 O 1.42894 * 109.47258 * 66.24495 * 26 25 16 28 28 C 1.46923 * 120.63022 * 179.71990 * 10 8 7 29 29 H 1.09008 * 109.47136 * 270.22932 * 1 2 3 30 30 H 1.09003 * 109.47339 * 30.22556 * 1 2 3 31 31 H 1.08999 * 109.47230 * 150.23311 * 1 2 3 32 32 H 1.08999 * 109.46973 * 210.02714 * 7 6 5 33 33 H 1.08998 * 109.46973 * 330.02345 * 7 6 5 34 34 H 1.08998 * 109.58955 * 246.16196 * 11 10 8 35 35 H 1.09002 * 109.58424 * 6.44529 * 11 10 8 36 36 H 1.09001 * 109.49401 * 174.58478 * 12 11 10 37 37 H 1.09000 * 109.49981 * 294.68561 * 12 11 10 38 38 H 1.09005 * 109.46062 * 58.65526 * 13 12 11 39 39 H 1.08999 * 109.45890 * 178.62855 * 13 12 11 40 40 H 0.97001 * 120.00250 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.47433 * 206.26732 * 25 16 14 42 42 H 1.09003 * 109.47195 * 326.26896 * 25 16 14 43 43 H 1.09007 * 109.47029 * 186.24596 * 26 25 16 44 44 H 1.09001 * 109.47143 * 306.24156 * 26 25 16 45 45 H 0.96708 * 114.00178 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.58695 * 353.41730 * 28 10 8 47 47 H 1.09011 * 109.58911 * 113.83699 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 -0.0058 5 7 3.5709 -0.7936 -0.0025 6 6 2.3212 -1.1498 0.0051 7 6 1.8208 -2.5714 0.0115 8 6 1.6611 -3.0413 1.4344 9 8 1.9269 -2.2952 2.3529 10 7 1.2228 -4.2906 1.6862 11 6 0.8962 -5.2058 0.5842 12 6 1.6766 -6.5098 0.7785 13 6 1.3828 -7.0727 2.1709 14 6 1.8412 -6.0724 3.2346 15 1 2.9076 -5.8795 3.1170 16 7 1.5884 -6.6256 4.5673 17 6 0.3118 -6.9470 4.9443 18 1 -0.5150 -6.3239 4.6370 19 6 0.0804 -8.0735 5.7216 20 7 -1.0150 -8.1596 6.4461 21 14 1.3239 -9.4674 5.7395 22 1 2.2381 -9.3005 6.8977 23 1 0.6113 -10.7651 5.8544 24 1 2.1110 -9.4448 4.4804 25 6 2.7013 -6.8350 5.4967 26 6 2.9666 -5.5440 6.2738 27 8 1.8501 -5.2586 7.1187 28 6 1.0678 -4.7653 3.0680 29 1 -0.3634 0.0041 1.0277 30 1 -0.3634 0.8880 -0.5173 31 1 -0.3633 -0.8920 -0.5102 32 1 0.8582 -2.6199 -0.4975 33 1 2.5371 -3.2110 -0.5041 34 1 -0.1733 -5.4159 0.5883 35 1 1.1751 -4.7486 -0.3652 36 1 1.3711 -7.2326 0.0220 37 1 2.7444 -6.3123 0.6837 38 1 0.3117 -7.2467 2.2737 39 1 1.9178 -8.0132 2.3027 40 1 -1.1765 -8.9467 6.9895 41 1 2.4470 -7.6332 6.1942 42 1 3.5947 -7.1124 4.9372 43 1 3.8623 -5.6643 6.8834 44 1 3.1118 -4.7216 5.5733 45 1 1.9495 -4.4520 7.6428 46 1 1.4621 -4.0185 3.7573 47 1 0.0124 -4.9387 3.2787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692043584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:10 Heat of formation + Delta-G solvation = 10.642797 kcal Electronic energy + Delta-G solvation = -30720.990067 eV Core-core repulsion = 26522.260450 eV Total energy + Delta-G solvation = -4198.729617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.63283 -41.18988 -39.21796 -37.82838 -36.37512 -35.66354 -34.50442 -33.89751 -33.15373 -31.80353 -30.47452 -29.64642 -29.15205 -26.27633 -25.87316 -23.99289 -23.51100 -22.75497 -22.02367 -21.21203 -19.94932 -18.53473 -18.44057 -18.25695 -17.92218 -17.20879 -17.08821 -16.68136 -16.65224 -16.07179 -15.49043 -15.43117 -15.24451 -15.10693 -14.94870 -14.63981 -14.53038 -14.28705 -14.15048 -14.06292 -13.88694 -13.77860 -13.42057 -13.11444 -13.02958 -12.88258 -12.84084 -12.62015 -12.44442 -12.17520 -12.06216 -11.92619 -11.74787 -11.67674 -11.64505 -11.53162 -11.24297 -10.92515 -10.74232 -10.52163 -9.70836 -8.66638 -8.06400 -5.43189 -0.56089 0.87021 1.34034 1.42246 1.48409 1.52367 1.52897 1.95155 2.11694 2.51190 2.80141 3.09559 3.34274 3.40265 3.60536 3.65888 3.88536 4.05862 4.12444 4.14259 4.18835 4.26209 4.38243 4.41213 4.42851 4.47096 4.50220 4.58607 4.62654 4.67912 4.72646 4.75135 4.86020 4.95355 4.99525 5.03236 5.10336 5.12527 5.26435 5.46717 5.50708 5.65178 5.82478 6.05311 6.29429 6.43968 7.02071 7.08704 7.12329 7.73402 8.13605 9.13508 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.003076 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.676687 B = 9100.129312 C = 9602.852620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.098 3.902 3 N -0.308 5.308 4 O -0.018 6.018 5 N -0.292 5.292 6 C 0.105 3.895 7 C -0.072 4.072 8 C 0.516 3.484 9 O -0.592 6.592 10 N -0.596 5.596 11 C 0.098 3.902 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.166 3.834 15 H 0.064 0.936 16 N -0.601 5.601 17 C -0.218 4.218 18 H 0.041 0.959 19 C -0.016 4.016 20 N -0.951 5.951 21 Si 0.933 3.067 22 H -0.290 1.290 23 H -0.315 1.315 24 H -0.249 1.249 25 C 0.121 3.879 26 C 0.064 3.936 27 O -0.574 6.574 28 C 0.121 3.879 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.184 0.816 33 H 0.157 0.843 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.256 0.744 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.037 0.963 45 H 0.376 0.624 46 H 0.054 0.946 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.067 8.297 -19.855 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 N -0.057 5.057 4 O -0.151 6.151 5 N -0.037 5.037 6 C -0.079 4.079 7 C -0.112 4.112 8 C 0.304 3.696 9 O -0.472 6.472 10 N -0.329 5.329 11 C -0.023 4.023 12 C -0.164 4.164 13 C -0.164 4.164 14 C 0.059 3.941 15 H 0.082 0.918 16 N -0.323 5.323 17 C -0.348 4.348 18 H 0.058 0.942 19 C -0.211 4.211 20 N -0.596 5.596 21 Si 0.763 3.237 22 H -0.219 1.219 23 H -0.244 1.244 24 H -0.173 1.173 25 C -0.005 4.005 26 C -0.016 4.016 27 O -0.379 6.379 28 C -0.004 4.004 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.201 0.799 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.151 0.849 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.222 0.778 46 H 0.072 0.928 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.142 8.886 -19.582 22.110 hybrid contribution 0.107 -0.633 1.573 1.699 sum 5.249 8.253 -18.009 20.494 Atomic orbital electron populations 1.20916 0.80890 1.07784 1.05786 1.25270 1.02125 0.87977 0.93140 1.79879 0.88690 1.20939 1.16240 1.93352 1.21686 1.14103 1.85984 1.79851 1.19206 0.91045 1.13595 1.24381 0.89362 0.99383 0.94768 1.20697 1.08505 0.87132 0.94901 1.20678 0.76354 0.81399 0.91207 1.90759 1.52451 1.55581 1.48458 1.48198 1.64294 1.12585 1.07776 1.22241 1.01030 0.89648 0.89395 1.21927 1.01096 0.97278 0.96078 1.21885 1.01389 0.98191 0.94938 1.20724 0.97021 0.91765 0.84560 0.91829 1.44127 1.03438 1.74283 1.10468 1.18267 0.84243 1.03638 1.28644 0.94187 1.25881 0.97249 0.99873 0.98121 1.70017 1.30400 1.29613 1.29557 0.86030 0.79453 0.79574 0.78651 1.21853 1.24407 1.17272 1.21527 0.91237 0.95382 0.92324 1.22858 0.87924 0.98285 0.92569 1.86821 1.43461 1.47748 1.59872 1.21676 1.00296 0.96262 0.82121 0.88495 0.87637 0.84932 0.79913 0.82566 0.89863 0.84851 0.87975 0.90930 0.92958 0.93395 0.93528 0.94188 0.90078 0.92714 0.94489 0.77760 0.92781 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.23 71.24 0.73 -0.11 16 2 C 0.10 1.86 7.19 43.49 0.31 2.17 16 3 N -0.31 -8.02 12.98 -47.16 -0.61 -8.64 16 4 O -0.02 -0.54 13.71 70.16 0.96 0.42 16 5 N -0.29 -7.87 12.98 -47.16 -0.61 -8.48 16 6 C 0.11 2.08 5.68 43.49 0.25 2.33 16 7 C -0.07 -0.81 4.39 29.10 0.13 -0.68 16 8 C 0.52 11.76 7.69 87.66 0.67 12.44 16 9 O -0.59 -20.40 15.45 -3.03 -0.05 -20.45 16 10 N -0.60 -13.52 2.98 -819.66 -2.44 -15.96 16 11 C 0.10 1.27 6.35 86.36 0.55 1.82 16 12 C -0.13 -2.08 6.08 30.67 0.19 -1.90 16 13 C -0.12 -3.68 5.11 30.62 0.16 -3.52 16 14 C 0.17 5.75 2.77 44.94 0.12 5.88 16 15 H 0.06 2.07 7.85 -2.38 -0.02 2.05 16 16 N -0.60 -26.41 1.99 -678.34 -1.35 -27.76 16 17 C -0.22 -11.72 8.41 84.03 0.71 -11.01 16 18 H 0.04 2.41 6.89 -2.91 -0.02 2.39 16 19 C -0.02 -0.91 5.28 84.86 0.45 -0.46 16 20 N -0.95 -59.63 13.97 21.65 0.30 -59.33 16 21 Si 0.93 45.65 25.06 68.60 1.72 47.37 16 22 H -0.29 -14.14 6.67 99.48 0.66 -13.48 16 23 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 24 H -0.25 -11.12 7.11 99.48 0.71 -10.41 16 25 C 0.12 4.98 4.72 86.38 0.41 5.39 16 26 C 0.06 2.37 7.38 71.98 0.53 2.90 16 27 O -0.57 -24.76 13.36 -148.98 -1.99 -26.75 16 28 C 0.12 4.12 5.75 86.23 0.50 4.62 16 29 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.13 0.09 7.13 -2.39 -0.02 0.08 16 32 H 0.18 0.01 6.93 -2.39 -0.02 0.00 16 33 H 0.16 0.89 7.69 -2.39 -0.02 0.87 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.13 0.35 5.93 -2.39 -0.01 0.33 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.80 7.70 -2.38 -0.02 1.78 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.04 1.89 3.47 -2.38 -0.01 1.88 16 42 H 0.08 2.80 8.00 -2.39 -0.02 2.78 16 43 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.38 12.11 9.12 -74.05 -0.68 11.43 16 46 H 0.05 2.17 7.01 -2.39 -0.02 2.16 16 47 H 0.05 2.04 6.78 -2.38 -0.02 2.02 16 Total: -1.00 -88.74 378.35 1.92 -86.82 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.29 Total: 12.90 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 5.70 Total: 19.86 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -4.71 Total: -120.17 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -1.08 Total: -46.77 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.72 Total: 47.37 kcal Total: -88.74 1.92 -86.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692043584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.463 kcal (2) G-P(sol) polarization free energy of solvation -88.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds