Wall clock time and date at job start Tue Mar 31 2020 22:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47251 * 2 1 4 4 C 1.35319 * 126.66783 * 90.29033 * 3 2 1 5 5 C 1.42266 * 103.92302 * 180.08740 * 4 3 2 6 6 C 1.48334 * 126.93704 * 179.90741 * 5 4 3 7 7 O 1.21491 * 119.99933 * 359.70792 * 6 5 4 8 8 N 1.34781 * 119.99903 * 179.70914 * 6 5 4 9 9 C 1.46497 * 120.00055 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46680 * 60.00313 * 23 21 19 25 25 H 1.48496 * 109.46939 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47298 * 300.00205 * 23 21 19 27 27 N 1.30990 * 106.12485 * 359.64791 * 5 4 3 28 28 O 1.20901 * 111.43532 * 0.22559 * 27 5 4 29 29 H 1.09008 * 109.47087 * 300.00358 * 1 2 3 30 30 H 1.09001 * 109.47009 * 59.99544 * 1 2 3 31 31 H 1.08996 * 109.47668 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46997 * 240.00112 * 2 1 3 33 33 H 1.09001 * 109.47009 * 120.00456 * 2 1 3 34 34 H 1.07998 * 128.03337 * 359.95882 * 4 3 2 35 35 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 36 36 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 37 37 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 38 38 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 39 39 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 41 41 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 42 42 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 43 43 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 44 44 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 45 45 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 46 46 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3069 2.1808 1.0854 5 6 2.7396 3.4194 0.5354 6 6 3.1674 4.6263 1.2842 7 8 3.1653 4.6199 2.4991 8 7 3.5585 5.7300 0.6167 9 6 3.9815 6.9218 1.3562 10 6 4.3710 8.0233 0.3685 11 1 5.1295 7.6452 -0.3169 12 6 3.1367 8.4564 -0.4252 13 6 4.9301 9.2228 1.1365 14 7 5.4144 10.2312 0.1845 15 6 5.9603 11.3998 0.8878 16 6 6.4465 12.4101 -0.1191 17 8 6.3476 12.1796 -1.3058 18 7 6.9913 13.5698 0.2991 19 6 7.4332 14.4891 -0.6169 20 1 7.3452 14.2840 -1.6735 21 6 7.9944 15.6850 -0.1859 22 7 8.1010 15.9349 1.0999 23 14 8.5972 16.9373 -1.4339 24 1 7.4645 17.3624 -2.2951 25 1 9.1484 18.1188 -0.7230 26 1 9.6570 16.3266 -2.2758 27 7 2.6894 3.2770 -0.7658 28 8 2.2995 2.1752 -1.0750 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2163 1.9106 2.1271 35 1 3.5598 5.7353 -0.3532 36 1 4.8388 6.6753 1.9828 37 1 3.1611 7.2703 1.9836 38 1 2.3783 8.8346 0.2603 39 1 3.4141 9.2416 -1.1286 40 1 2.7384 7.6020 -0.9723 41 1 5.7545 8.8960 1.7704 42 1 4.1448 9.6555 1.7562 43 1 4.6844 10.5032 -0.4567 44 1 5.1823 11.8479 1.5060 45 1 6.7918 11.0878 1.5196 46 1 7.0700 13.7543 1.2481 47 1 8.4931 16.7695 1.4008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698770266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:28 Heat of formation + Delta-G solvation = -25.025997 kcal Electronic energy + Delta-G solvation = -27470.377219 eV Core-core repulsion = 23270.100887 eV Total energy + Delta-G solvation = -4200.276332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.54577 -40.04171 -38.40122 -37.31361 -35.51397 -34.99366 -34.31935 -33.85078 -32.30118 -31.18658 -30.67864 -27.46793 -27.36274 -25.42541 -24.75005 -24.26323 -23.17374 -22.58910 -20.80913 -20.08655 -19.20937 -18.31858 -18.01048 -17.86672 -17.22270 -16.65076 -15.95352 -15.83362 -15.50659 -15.19970 -15.08668 -14.69789 -14.49032 -14.30951 -14.10073 -13.97374 -13.72747 -13.46943 -13.24410 -13.00716 -12.84493 -12.66732 -12.46079 -12.10699 -12.07293 -11.62936 -11.58910 -11.53900 -11.24766 -11.07021 -10.99614 -10.92995 -10.90079 -10.64088 -10.43770 -10.20758 -9.96142 -9.49538 -9.47607 -8.46243 -8.06590 -7.95401 -6.41062 -3.82000 0.66269 1.19389 2.39406 2.58646 2.77522 3.20676 3.26306 3.30752 3.51153 3.91373 3.93935 4.09165 4.29410 4.34757 4.51096 4.53098 4.61865 4.67753 4.73030 4.82665 4.86671 5.04187 5.12930 5.18731 5.25867 5.31839 5.32547 5.38425 5.38874 5.48553 5.55360 5.57834 5.70509 5.78890 5.82551 5.94214 5.98823 6.09026 6.16361 6.27609 6.98112 7.19913 7.52264 7.55553 7.65404 7.70725 8.06673 8.61906 9.18301 9.54868 10.06365 10.76595 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.041262 B = 0.001367 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.421506 B =20479.918555 C =20921.198324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.029 4.029 4 C -0.182 4.182 5 C -0.025 4.025 6 C 0.598 3.402 7 O -0.522 6.522 8 N -0.709 5.709 9 C 0.124 3.876 10 C -0.102 4.102 11 H 0.090 0.910 12 C -0.154 4.154 13 C 0.067 3.933 14 N -0.668 5.668 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 N -0.331 5.331 28 O 0.124 5.876 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.181 0.819 35 H 0.408 0.592 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 -30.990 2.174 34.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.204 4.204 5 C -0.184 4.184 6 C 0.381 3.619 7 O -0.397 6.397 8 N -0.362 5.362 9 C 0.001 3.999 10 C -0.122 4.122 11 H 0.109 0.891 12 C -0.211 4.211 13 C -0.063 4.063 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.032 5.032 28 O 0.048 5.952 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.198 0.802 35 H 0.244 0.756 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.170 0.830 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.078 -30.348 1.294 33.479 hybrid contribution -0.471 0.984 0.702 1.297 sum -14.549 -29.364 1.996 32.831 Atomic orbital electron populations 1.21819 0.93207 1.03012 1.03037 1.20181 0.96845 0.85925 1.05167 1.24568 1.02067 0.97248 0.85367 1.22437 1.04883 0.91531 1.01587 1.23505 1.06653 0.98009 0.90208 1.16854 0.77596 0.81093 0.86345 1.90816 1.53782 1.82610 1.12451 1.45877 1.66209 1.12971 1.11099 1.21506 1.00549 0.83498 0.94383 1.21377 0.98678 0.94645 0.97451 0.89122 1.21915 0.96977 1.01799 1.00415 1.21869 0.98398 0.92012 0.94060 1.60080 1.39963 1.11989 1.18156 1.21673 0.99659 0.91024 0.95879 1.19809 0.84579 0.83596 0.89448 1.90517 1.60818 1.78210 1.17277 1.41852 1.53369 1.15073 1.09671 1.19661 1.36225 0.96038 0.91110 0.87975 1.25258 0.97525 0.98351 0.96729 1.69607 1.45195 1.26106 1.13414 0.85916 0.79157 0.79301 0.79838 1.19927 1.20968 1.19873 1.74193 1.13969 0.99489 1.15527 1.84781 1.59750 1.17190 1.33497 0.91941 0.91906 0.90997 0.88946 0.88135 0.80180 0.75609 0.90647 0.90848 0.92563 0.91229 0.92749 0.90679 0.95089 0.83024 0.93834 0.89539 0.77442 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.34 9.89 37.16 0.37 0.02 16 2 C -0.04 -0.10 6.50 -27.89 -0.18 -0.29 16 3 C -0.03 -0.18 6.73 -35.35 -0.24 -0.42 16 4 C -0.18 -1.41 10.92 -39.08 -0.43 -1.83 16 5 C -0.02 -0.25 7.19 -82.52 -0.59 -0.84 16 6 C 0.60 6.90 7.85 -12.10 -0.09 6.81 16 7 O -0.52 -7.41 16.95 5.37 0.09 -7.32 16 8 N -0.71 -7.02 5.28 -61.10 -0.32 -7.34 16 9 C 0.12 1.21 5.06 -4.05 -0.02 1.19 16 10 C -0.10 -1.03 2.63 -90.62 -0.24 -1.27 16 11 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 12 C -0.15 -1.49 8.84 37.16 0.33 -1.17 16 13 C 0.07 0.79 5.14 -3.82 -0.02 0.77 16 14 N -0.67 -10.65 6.12 -115.05 -0.70 -11.35 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 16 C 0.44 10.48 7.82 -10.99 -0.09 10.39 16 17 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 18 N -0.56 -14.38 5.29 -10.97 -0.06 -14.44 16 19 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 23 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 27 N -0.33 -3.27 11.84 33.29 0.39 -2.87 16 28 O 0.12 1.01 11.18 17.24 0.19 1.20 16 29 H 0.06 0.17 8.14 -51.92 -0.42 -0.25 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.41 3.61 7.41 -40.82 -0.30 3.31 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.76 6.68 -51.93 -0.35 0.42 16 40 H 0.05 0.47 7.18 -51.93 -0.37 0.10 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.35 5.72 6.68 -39.29 -0.26 5.46 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -33.94 401.51 -7.08 -41.01 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.04 Total: 12.57 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -1.47 Total: 6.15 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.03 Total: -59.94 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.37 Total: -21.99 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.94 -7.08 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698770266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.989 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds