Wall clock time and date at job start Tue Mar 31 2020 22:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47251 * 2 1 4 4 C 1.35319 * 126.66783 * 90.29033 * 3 2 1 5 5 C 1.42266 * 103.92302 * 180.08740 * 4 3 2 6 6 C 1.48334 * 126.93704 * 179.90741 * 5 4 3 7 7 O 1.21491 * 119.99933 * 359.70792 * 6 5 4 8 8 N 1.34781 * 119.99903 * 179.70914 * 6 5 4 9 9 C 1.46497 * 120.00055 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46680 * 60.00313 * 23 21 19 25 25 H 1.48496 * 109.46939 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47298 * 300.00205 * 23 21 19 27 27 N 1.30990 * 106.12485 * 359.64791 * 5 4 3 28 28 O 1.20901 * 111.43532 * 0.22559 * 27 5 4 29 29 H 1.09008 * 109.47087 * 300.00358 * 1 2 3 30 30 H 1.09001 * 109.47009 * 59.99544 * 1 2 3 31 31 H 1.08996 * 109.47668 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46997 * 240.00112 * 2 1 3 33 33 H 1.09001 * 109.47009 * 120.00456 * 2 1 3 34 34 H 1.07998 * 128.03337 * 359.95882 * 4 3 2 35 35 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 36 36 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 37 37 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 38 38 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 39 39 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 41 41 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 42 42 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 43 43 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 44 44 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 45 45 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 46 46 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3069 2.1808 1.0854 5 6 2.7396 3.4194 0.5354 6 6 3.1674 4.6263 1.2842 7 8 3.1653 4.6199 2.4991 8 7 3.5585 5.7300 0.6167 9 6 3.9815 6.9218 1.3562 10 6 4.3710 8.0233 0.3685 11 1 5.1295 7.6452 -0.3169 12 6 3.1367 8.4564 -0.4252 13 6 4.9301 9.2228 1.1365 14 7 5.4144 10.2312 0.1845 15 6 5.9603 11.3998 0.8878 16 6 6.4465 12.4101 -0.1191 17 8 6.3476 12.1796 -1.3058 18 7 6.9913 13.5698 0.2991 19 6 7.4332 14.4891 -0.6169 20 1 7.3452 14.2840 -1.6735 21 6 7.9944 15.6850 -0.1859 22 7 8.1010 15.9349 1.0999 23 14 8.5972 16.9373 -1.4339 24 1 7.4645 17.3624 -2.2951 25 1 9.1484 18.1188 -0.7230 26 1 9.6570 16.3266 -2.2758 27 7 2.6894 3.2770 -0.7658 28 8 2.2995 2.1752 -1.0750 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2163 1.9106 2.1271 35 1 3.5598 5.7353 -0.3532 36 1 4.8388 6.6753 1.9828 37 1 3.1611 7.2703 1.9836 38 1 2.3783 8.8346 0.2603 39 1 3.4141 9.2416 -1.1286 40 1 2.7384 7.6020 -0.9723 41 1 5.7545 8.8960 1.7704 42 1 4.1448 9.6555 1.7562 43 1 4.6844 10.5032 -0.4567 44 1 5.1823 11.8479 1.5060 45 1 6.7918 11.0878 1.5196 46 1 7.0700 13.7543 1.2481 47 1 8.4931 16.7695 1.4008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698770266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:27 Heat of formation + Delta-G solvation = -50.602035 kcal Electronic energy + Delta-G solvation = -27471.486279 eV Core-core repulsion = 23270.100887 eV Total energy + Delta-G solvation = -4201.385392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.19713 -40.93162 -40.17868 -38.42278 -36.27643 -35.87591 -35.71948 -34.98143 -33.44448 -33.12072 -31.14284 -28.87929 -28.18118 -26.80194 -25.66957 -24.97954 -24.20411 -23.30807 -21.65462 -21.19897 -20.74423 -19.90842 -18.96409 -18.59409 -18.07917 -17.84917 -17.25933 -16.96294 -16.66103 -16.42014 -16.05563 -15.70389 -15.57866 -15.38679 -15.28294 -15.03743 -14.65981 -14.40190 -14.34802 -14.00812 -13.65549 -13.50377 -13.48139 -13.38876 -13.09655 -12.91817 -12.80365 -12.43964 -12.41713 -12.18420 -12.12000 -11.92011 -11.86848 -11.82435 -11.61949 -11.56445 -11.50642 -10.49658 -10.35981 -10.32166 -10.02300 -9.33708 -8.47028 -5.96055 -0.03336 0.61355 1.39614 1.41544 1.52522 1.70429 1.94781 1.99433 2.04595 2.29026 2.78764 2.94273 3.20262 3.43244 3.50671 3.82197 3.85226 3.88229 3.92829 4.07875 4.16228 4.32242 4.35094 4.43813 4.44692 4.48266 4.52090 4.56798 4.65528 4.72377 4.75472 4.88029 4.94233 4.95704 5.07376 5.08336 5.14114 5.24950 5.32676 5.40188 5.40283 5.87508 6.09039 6.16102 6.40070 6.59537 6.79498 6.96706 7.11825 7.55500 8.10737 8.70105 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.041262 B = 0.001367 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.421506 B =20479.918555 C =20921.198324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.012 4.012 4 C -0.195 4.195 5 C -0.046 4.046 6 C 0.596 3.404 7 O -0.554 6.554 8 N -0.702 5.702 9 C 0.130 3.870 10 C -0.090 4.090 11 H 0.083 0.917 12 C -0.151 4.151 13 C 0.068 3.932 14 N -0.683 5.683 15 C 0.064 3.936 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.079 0.921 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.272 1.272 27 N -0.348 5.348 28 O 0.123 5.877 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.192 0.808 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.345 0.655 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.566 -32.332 2.553 35.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.075 4.075 4 C -0.218 4.218 5 C -0.204 4.204 6 C 0.381 3.619 7 O -0.432 6.432 8 N -0.354 5.354 9 C 0.007 3.993 10 C -0.109 4.109 11 H 0.102 0.898 12 C -0.208 4.208 13 C -0.062 4.062 14 N -0.316 5.316 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.097 0.903 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.197 1.197 27 N -0.048 5.048 28 O 0.047 5.953 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.210 0.790 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.165 0.835 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.620 -31.691 1.684 34.941 hybrid contribution -0.352 1.292 0.563 1.453 sum -14.972 -30.399 2.248 33.961 Atomic orbital electron populations 1.21827 0.92915 1.03957 1.02331 1.20439 0.96889 0.83614 1.06993 1.25208 1.00053 0.98100 0.84105 1.22674 1.05488 0.90975 1.02682 1.23508 1.07877 0.98376 0.90640 1.17059 0.77131 0.81651 0.86082 1.90787 1.55395 1.83275 1.13702 1.45851 1.65457 1.12701 1.11364 1.21430 1.00560 0.83226 0.94131 1.21221 0.98523 0.94040 0.97152 0.89837 1.21885 0.96921 1.01762 1.00275 1.21945 0.99153 0.91411 0.93647 1.60075 1.40536 1.11819 1.19192 1.21540 1.00925 0.90139 0.94232 1.20895 0.82880 0.83739 0.90111 1.90485 1.61976 1.79017 1.19558 1.41921 1.53978 1.15543 1.09489 1.19649 1.38500 0.97767 0.90732 0.90310 1.26034 0.96929 0.99481 0.98667 1.69668 1.45082 1.26743 1.14582 0.84994 0.78566 0.77153 0.77662 1.19655 1.19433 1.19748 1.74184 1.14770 1.00416 1.15447 1.84750 1.59356 1.16953 1.34256 0.92566 0.92736 0.89234 0.87308 0.86097 0.79029 0.74987 0.90752 0.90660 0.91981 0.92575 0.91797 0.89904 0.93660 0.83518 0.91479 0.87739 0.76950 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.38 9.89 71.98 0.71 0.33 16 2 C -0.04 -0.10 6.50 29.85 0.19 0.09 16 3 C -0.01 -0.12 6.73 25.01 0.17 0.04 16 4 C -0.20 -2.88 10.92 22.60 0.25 -2.63 16 5 C -0.05 -0.93 7.19 42.96 0.31 -0.62 16 6 C 0.60 13.77 7.85 86.93 0.68 14.45 16 7 O -0.55 -15.81 16.95 -3.69 -0.06 -15.87 16 8 N -0.70 -13.60 5.28 -465.51 -2.46 -16.06 16 9 C 0.13 2.41 5.06 86.38 0.44 2.85 16 10 C -0.09 -1.72 2.63 -10.79 -0.03 -1.75 16 11 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 12 C -0.15 -2.80 8.84 71.98 0.64 -2.17 16 13 C 0.07 1.49 5.14 86.31 0.44 1.94 16 14 N -0.68 -21.10 6.12 -517.92 -3.17 -24.27 16 15 C 0.06 2.19 6.17 85.56 0.53 2.72 16 16 C 0.44 20.92 7.82 87.66 0.69 21.61 16 17 O -0.62 -34.84 15.78 -3.06 -0.05 -34.89 16 18 N -0.57 -29.59 5.29 -306.99 -1.62 -31.22 16 19 C -0.34 -19.31 9.68 84.04 0.81 -18.49 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 23 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 N -0.35 -6.75 11.84 -49.52 -0.59 -7.34 16 28 O 0.12 1.91 11.18 71.88 0.80 2.71 16 29 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.19 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.41 7.15 7.41 -92.71 -0.69 6.46 16 36 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.21 6.68 -2.39 -0.02 1.20 16 40 H 0.06 1.05 7.18 -2.39 -0.02 1.03 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.34 11.18 6.68 -89.69 -0.60 10.58 16 44 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 47 H 0.28 14.13 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -74.03 401.51 0.46 -73.57 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -1.00 Total: 39.57 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 6.30 Total: 18.23 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -7.56 Total: -128.47 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: 0.69 Total: -48.04 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.03 0.46 -73.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698770266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.966 kcal (2) G-P(sol) polarization free energy of solvation -74.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds