Wall clock time and date at job start Tue Mar 31 2020 22:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47361 * 2 1 4 4 C 1.35322 * 126.66347 * 90.32226 * 3 2 1 5 5 C 1.42272 * 103.91616 * 180.08154 * 4 3 2 6 6 C 1.48336 * 126.93380 * 179.88788 * 5 4 3 7 7 O 1.21492 * 120.00111 * 359.70350 * 6 5 4 8 8 N 1.34773 * 119.99781 * 179.70964 * 6 5 4 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47237 * 179.72043 * 9 8 6 11 11 H 1.09004 * 109.46916 * 55.00034 * 10 9 8 12 12 C 1.53000 * 109.47247 * 295.00112 * 10 9 8 13 13 C 1.52999 * 109.47057 * 174.99470 * 10 9 8 14 14 N 1.46900 * 109.47058 * 184.99895 * 13 10 9 15 15 C 1.46898 * 110.99982 * 180.02562 * 14 13 10 16 16 C 1.50694 * 109.47116 * 180.02562 * 15 14 13 17 17 O 1.21293 * 120.00380 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00014 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00242 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99464 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00098 * 180.02562 * 19 18 16 22 22 N 1.31404 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99693 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.47238 * 90.00200 * 23 21 19 25 25 H 1.48508 * 109.47125 * 209.99659 * 23 21 19 26 26 H 1.48496 * 109.47722 * 329.99991 * 23 21 19 27 27 N 1.30980 * 106.12531 * 359.62215 * 5 4 3 28 28 O 1.20897 * 111.44213 * 0.24072 * 27 5 4 29 29 H 1.09000 * 109.47501 * 300.00571 * 1 2 3 30 30 H 1.09006 * 109.46448 * 60.00009 * 1 2 3 31 31 H 1.09002 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47501 * 239.99429 * 2 1 3 33 33 H 1.09011 * 109.46888 * 120.00149 * 2 1 3 34 34 H 1.07999 * 128.03803 * 359.94049 * 4 3 2 35 35 H 0.97005 * 120.00161 * 359.71951 * 8 6 5 36 36 H 1.09001 * 109.46512 * 299.72412 * 9 8 6 37 37 H 1.08998 * 109.47174 * 59.71534 * 9 8 6 38 38 H 1.08995 * 109.46959 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.46764 * 299.99787 * 12 10 9 40 40 H 1.08994 * 109.47418 * 59.99707 * 12 10 9 41 41 H 1.08993 * 109.47340 * 305.00469 * 13 10 9 42 42 H 1.09004 * 109.46801 * 65.00406 * 13 10 9 43 43 H 1.00903 * 111.00050 * 56.05302 * 14 13 10 44 44 H 1.09004 * 109.47147 * 300.00549 * 15 14 13 45 45 H 1.08999 * 109.47473 * 60.00265 * 15 14 13 46 46 H 0.97000 * 120.00340 * 0.02562 * 18 16 15 47 47 H 0.97000 * 120.00114 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3075 2.1805 1.0855 5 6 2.7401 3.4192 0.5354 6 6 3.1680 4.6261 1.2842 7 8 3.1660 4.6197 2.4991 8 7 3.5589 5.7298 0.6168 9 6 3.9820 6.9216 1.3564 10 6 4.3785 8.0207 0.3686 11 1 3.5533 8.2061 -0.3191 12 6 5.6108 7.5760 -0.4216 13 6 4.7007 9.3043 1.1363 14 7 4.9649 10.3912 0.1840 15 6 5.2792 11.6422 0.8870 16 6 5.5431 12.7317 -0.1202 17 8 5.4763 12.4898 -1.3069 18 7 5.8543 13.9747 0.2976 19 6 6.0948 14.9658 -0.6186 20 1 6.0353 14.7503 -1.6752 21 6 6.4162 16.2471 -0.1879 22 7 6.4890 16.5091 1.0977 23 14 6.7446 17.5972 -1.4363 24 1 5.4729 18.2931 -1.7590 25 1 7.7116 18.5712 -0.8693 26 1 7.3102 17.0009 -2.6731 27 7 2.6898 3.2768 -0.7657 28 8 2.2997 2.1751 -1.0749 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 2.2172 1.9102 2.1272 35 1 3.5643 5.7336 -0.3532 36 1 3.1601 7.2728 1.9802 37 1 4.8362 6.6739 1.9865 38 1 5.8930 8.3588 -1.1256 39 1 6.4359 7.3906 0.2661 40 1 5.3813 6.6615 -0.9685 41 1 3.8537 9.5723 1.7678 42 1 5.5814 9.1443 1.7584 43 1 4.1873 10.5162 -0.4468 44 1 4.4365 11.9266 1.5171 45 1 6.1641 11.4981 1.5070 46 1 5.9088 14.1680 1.2466 47 1 6.7130 17.4037 1.3985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698770270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:31 Heat of formation + Delta-G solvation = -50.666199 kcal Electronic energy + Delta-G solvation = -27466.079323 eV Core-core repulsion = 23264.691149 eV Total energy + Delta-G solvation = -4201.388175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.19925 -40.92801 -40.16480 -38.36105 -36.27718 -35.87411 -35.71242 -34.98515 -33.44919 -33.13610 -31.14346 -28.89797 -28.08978 -26.76350 -25.62789 -24.97026 -24.18674 -23.31070 -21.76389 -21.20339 -20.76981 -19.89277 -18.95514 -18.60779 -18.03331 -17.78137 -17.13402 -17.01402 -16.62952 -16.42604 -16.05375 -15.73549 -15.52784 -15.40732 -15.20038 -15.12518 -14.67816 -14.45968 -14.36279 -13.97979 -13.61671 -13.50403 -13.43531 -13.18548 -13.05628 -12.91534 -12.85315 -12.42342 -12.41770 -12.13338 -12.08942 -12.05288 -11.86287 -11.79354 -11.61841 -11.55149 -11.50810 -10.49740 -10.34980 -10.32519 -10.01845 -9.30746 -8.47083 -5.95901 -0.03381 0.61264 1.37712 1.41578 1.54372 1.70356 1.94676 1.99392 2.05194 2.29042 2.78727 2.94299 3.20415 3.43239 3.50343 3.79985 3.87504 3.89782 3.99192 4.08699 4.16577 4.32364 4.35027 4.43400 4.44248 4.47417 4.57290 4.58094 4.67947 4.72608 4.79179 4.90797 4.95565 5.01317 5.07204 5.08410 5.14068 5.29229 5.40194 5.40536 5.46416 5.87851 6.09482 6.15939 6.40347 6.59816 6.79426 6.96663 7.12275 7.56068 8.11314 8.70352 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.001369 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.864048 B =20445.659903 C =20849.300555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.012 4.012 4 C -0.195 4.195 5 C -0.046 4.046 6 C 0.596 3.404 7 O -0.555 6.555 8 N -0.702 5.702 9 C 0.129 3.871 10 C -0.089 4.089 11 H 0.081 0.919 12 C -0.137 4.137 13 C 0.068 3.932 14 N -0.678 5.678 15 C 0.065 3.935 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.273 1.273 27 N -0.348 5.348 28 O 0.123 5.877 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.192 0.808 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.344 0.656 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 -34.190 2.559 35.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.075 4.075 4 C -0.218 4.218 5 C -0.204 4.204 6 C 0.381 3.619 7 O -0.432 6.432 8 N -0.354 5.354 9 C 0.006 3.994 10 C -0.108 4.108 11 H 0.099 0.901 12 C -0.195 4.195 13 C -0.061 4.061 14 N -0.310 5.310 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.198 1.198 27 N -0.048 5.048 28 O 0.047 5.953 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.210 0.790 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.163 0.837 44 H 0.085 0.915 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.876 -33.426 1.678 34.895 hybrid contribution -0.617 1.220 0.594 1.491 sum -10.493 -32.206 2.272 33.948 Atomic orbital electron populations 1.21828 0.92946 1.03957 1.02318 1.20441 0.96862 0.83613 1.07006 1.25210 1.00051 0.98104 0.84107 1.22677 1.05488 0.90976 1.02681 1.23507 1.07888 0.98370 0.90640 1.17059 0.77129 0.81659 0.86082 1.90787 1.55405 1.83275 1.13705 1.45853 1.65384 1.12762 1.11370 1.21445 1.00455 0.83352 0.94167 1.21214 0.99416 0.93163 0.96977 0.90063 1.21709 0.96869 1.00710 1.00165 1.21948 1.01000 0.89547 0.93614 1.60019 1.46942 1.04379 1.19708 1.21523 1.02602 0.88447 0.94140 1.20902 0.82415 0.84099 0.90120 1.90489 1.58289 1.82634 1.19551 1.41934 1.61561 1.08072 1.09478 1.19678 1.46334 0.89782 0.90709 0.90337 1.26025 0.96428 1.00043 0.98655 1.69668 1.48613 1.23264 1.14578 0.84936 0.78438 0.77294 0.77718 1.19592 1.19523 1.19807 1.74177 1.14776 1.00412 1.15450 1.84750 1.59351 1.16955 1.34253 0.92578 0.92762 0.89224 0.87289 0.86080 0.79029 0.74978 0.90771 0.90705 0.92555 0.92603 0.92589 0.93716 0.89962 0.83735 0.91543 0.87810 0.76974 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.39 9.89 71.98 0.71 0.32 16 2 C -0.04 -0.10 6.50 29.85 0.19 0.10 16 3 C -0.01 -0.12 6.73 25.01 0.17 0.04 16 4 C -0.20 -2.87 10.92 22.60 0.25 -2.62 16 5 C -0.05 -0.93 7.19 42.96 0.31 -0.62 16 6 C 0.60 13.75 7.85 86.93 0.68 14.43 16 7 O -0.55 -15.80 16.95 -3.69 -0.06 -15.86 16 8 N -0.70 -13.57 5.28 -465.50 -2.46 -16.03 16 9 C 0.13 2.38 5.06 86.38 0.44 2.82 16 10 C -0.09 -1.68 2.57 -10.79 -0.03 -1.70 16 11 H 0.08 1.52 8.14 -2.38 -0.02 1.51 16 12 C -0.14 -2.83 8.95 71.98 0.64 -2.18 16 13 C 0.07 1.48 5.07 86.30 0.44 1.92 16 14 N -0.68 -20.51 5.58 -517.95 -2.89 -23.40 16 15 C 0.07 2.20 6.17 85.56 0.53 2.73 16 16 C 0.44 20.82 7.82 87.65 0.69 21.51 16 17 O -0.62 -34.60 15.78 -3.07 -0.05 -34.65 16 18 N -0.57 -29.56 5.29 -306.99 -1.62 -31.19 16 19 C -0.34 -19.20 9.68 84.04 0.81 -18.39 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 22 N -0.92 -49.89 13.05 21.66 0.28 -49.60 16 23 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 N -0.35 -6.74 11.84 -49.53 -0.59 -7.32 16 28 O 0.12 1.91 11.18 71.90 0.80 2.71 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.09 -0.06 8.14 -2.39 -0.02 -0.07 16 32 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.12 -0.14 8.14 -2.38 -0.02 -0.16 16 34 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.41 7.14 7.41 -92.70 -0.69 6.45 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.45 7.75 -2.39 -0.02 1.43 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.01 7.18 -2.39 -0.02 0.99 16 41 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.70 8.14 -2.38 -0.02 1.69 16 43 H 0.34 10.95 8.43 -89.69 -0.76 10.20 16 44 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 46 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 47 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -73.74 403.77 0.59 -73.16 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -1.16 Total: 38.82 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 6.30 Total: 18.19 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -7.28 Total: -127.54 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: 0.69 Total: -47.80 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.74 0.59 -73.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698770270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.491 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds