Wall clock time and date at job start Tue Mar 31 2020 21:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46883 * 90.02242 * 6 5 4 8 8 O 1.21284 * 120.00083 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99508 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00510 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99700 * 180.02562 * 9 7 6 12 12 C 1.52995 * 109.47164 * 89.99509 * 11 9 7 13 13 N 1.46907 * 109.47444 * 180.02562 * 12 11 9 14 14 C 1.46900 * 110.99657 * 66.04432 * 13 12 11 15 15 C 1.46897 * 111.00143 * 190.00268 * 13 12 11 16 16 C 1.50701 * 109.46866 * 169.99961 * 15 13 12 17 17 O 1.21296 * 120.00141 * 359.97438 * 16 15 13 18 18 N 1.34777 * 120.00185 * 179.97438 * 16 15 13 19 19 C 1.37094 * 120.00094 * 180.02562 * 18 16 15 20 20 H 1.07990 * 120.00166 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99731 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00462 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99823 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46921 * 60.00247 * 23 21 19 25 25 H 1.48508 * 109.47122 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47431 * 300.00251 * 23 21 19 27 27 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 29 29 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 30 30 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 31 31 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 33 33 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 34 34 H 1.09004 * 109.46708 * 90.00143 * 10 9 7 35 35 H 1.08993 * 109.46891 * 210.00437 * 10 9 7 36 36 H 1.08999 * 109.46760 * 330.00857 * 10 9 7 37 37 H 1.08997 * 109.47419 * 209.99701 * 11 9 7 38 38 H 1.09004 * 109.46992 * 329.99929 * 11 9 7 39 39 H 1.09004 * 109.47636 * 299.99972 * 12 11 9 40 40 H 1.09001 * 109.47541 * 60.00376 * 12 11 9 41 41 H 1.08995 * 109.47194 * 60.00253 * 14 13 12 42 42 H 1.09002 * 109.46845 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.47686 * 300.00306 * 14 13 12 44 44 H 1.08995 * 109.46918 * 289.99684 * 15 13 12 45 45 H 1.08994 * 109.47274 * 49.99752 * 15 13 12 46 46 H 0.96997 * 119.99318 * 359.97438 * 18 16 15 47 47 H 0.96994 * 120.00518 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 6 5.2011 -1.8489 1.4211 8 8 4.5611 -1.3890 2.3430 9 7 6.2775 -2.6217 1.6673 10 6 7.0510 -3.1767 0.5537 11 6 6.6734 -2.9078 3.0485 12 6 5.9700 -4.1792 3.5277 13 7 6.3665 -4.4657 4.9130 14 6 5.8728 -3.4274 5.8273 15 6 5.9037 -5.7965 5.3284 16 6 6.5303 -6.1560 6.6510 17 8 7.2883 -5.3801 7.1938 18 7 6.2485 -7.3396 7.2307 19 6 6.8182 -7.6664 8.4341 20 1 7.4931 -6.9756 8.9174 21 6 6.5272 -8.8865 9.0320 22 7 5.7056 -9.7270 8.4442 23 14 7.3040 -9.3320 10.6714 24 1 6.9119 -8.3289 11.6938 25 1 6.8347 -10.6766 11.0923 26 1 8.7823 -9.3445 10.5316 27 8 2.2872 -1.0891 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 4.4157 1.3161 0.0011 32 1 4.5695 -2.4896 -0.5140 33 1 5.6081 -1.0440 -0.5130 34 1 7.8422 -2.4795 0.2779 35 1 7.4925 -4.1264 0.8558 36 1 6.3937 -3.3369 -0.3009 37 1 7.7530 -3.0503 3.0950 38 1 6.3893 -2.0723 3.6883 39 1 4.8903 -4.0367 3.4813 40 1 6.2540 -5.0147 2.8880 41 1 4.7848 -3.3860 5.7766 42 1 6.1807 -3.6639 6.8458 43 1 6.2869 -2.4615 5.5379 44 1 4.8186 -5.7882 5.4309 45 1 6.1921 -6.5323 4.5778 46 1 5.6421 -7.9599 6.7968 47 1 5.5022 -10.5785 8.8617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698989358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:03 Heat of formation + Delta-G solvation = -61.355951 kcal Electronic energy + Delta-G solvation = -28615.632141 eV Core-core repulsion = 24413.780424 eV Total energy + Delta-G solvation = -4201.851717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.35558 -41.07541 -40.34304 -38.17389 -36.52863 -35.83283 -35.80162 -34.24515 -33.29074 -31.93982 -30.64198 -29.19132 -27.70581 -27.36781 -26.67596 -25.22852 -23.45435 -22.61851 -22.02394 -21.02603 -20.28592 -19.85435 -18.47475 -18.06521 -17.91275 -17.52794 -17.28977 -16.78935 -16.54281 -16.48562 -16.19086 -15.67602 -15.43856 -15.27030 -15.03639 -14.92998 -14.38521 -14.28017 -13.99502 -13.93078 -13.84716 -13.77730 -13.45944 -13.36243 -13.23694 -13.21227 -13.03108 -12.82636 -12.62957 -12.56562 -12.42498 -12.32309 -12.12620 -11.88148 -11.60690 -11.46045 -11.09637 -10.34984 -10.00874 -9.75518 -9.68901 -9.32660 -8.46420 -5.95170 0.36224 1.39666 1.41410 1.48679 1.52356 1.53897 1.68289 1.99784 2.04253 2.29376 2.81822 3.13735 3.19858 3.38373 3.49098 3.67579 3.90651 4.00466 4.07476 4.11109 4.20635 4.30050 4.32219 4.39593 4.44609 4.48448 4.54988 4.58706 4.59566 4.63343 4.66348 4.75138 4.78277 4.90569 4.98817 5.00755 5.05425 5.13231 5.35861 5.40427 5.42115 5.80872 6.00301 6.10858 6.31025 6.60317 6.68934 7.06075 7.12628 7.55675 8.11515 8.70773 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.001816 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.819669 B =15412.982000 C =16052.926193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.182 3.818 3 N -0.519 5.519 4 C -0.042 4.042 5 C -0.042 4.042 6 C -0.043 4.043 7 C 0.505 3.495 8 O -0.585 6.585 9 N -0.607 5.607 10 C 0.063 3.937 11 C 0.124 3.876 12 C 0.050 3.950 13 N -0.527 5.527 14 C 0.030 3.970 15 C 0.058 3.942 16 C 0.442 3.558 17 O -0.613 6.613 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 O -0.213 6.213 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.200 0.800 32 H 0.143 0.857 33 H 0.168 0.832 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.096 0.904 41 H 0.016 0.984 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.116 0.884 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 13.628 -26.076 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.024 4.024 3 N -0.249 5.249 4 C -0.180 4.180 5 C -0.095 4.095 6 C -0.083 4.083 7 C 0.294 3.706 8 O -0.465 6.465 9 N -0.340 5.340 10 C -0.078 4.078 11 C 0.000 4.000 12 C -0.079 4.079 13 N -0.251 5.251 14 C -0.118 4.118 15 C -0.073 4.073 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.196 1.196 27 O -0.101 6.101 28 H 0.118 0.882 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.217 0.783 32 H 0.161 0.839 33 H 0.186 0.814 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.114 0.886 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.134 0.866 46 H 0.229 0.771 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.275 14.747 -25.178 29.490 hybrid contribution -0.613 -1.237 1.062 1.742 sum -4.888 13.509 -24.116 28.070 Atomic orbital electron populations 1.20522 0.78501 1.06693 1.05742 1.27211 0.98004 0.78138 0.99022 1.70425 1.03007 1.31351 1.20134 1.23395 0.95435 0.93575 1.05611 1.23052 0.83706 0.95305 1.07394 1.20290 0.91980 1.01960 0.94024 1.21051 0.79861 0.77871 0.91771 1.90759 1.54267 1.53350 1.48103 1.47902 1.28694 1.49597 1.07795 1.22280 0.96934 1.00362 0.88243 1.21303 1.00389 0.96179 0.82115 1.22456 0.97182 0.99505 0.88764 1.61509 1.60231 1.01025 1.02366 1.22398 0.96354 0.95087 0.97975 1.21748 0.97786 0.92584 0.95196 1.20680 0.85374 0.82544 0.88484 1.90462 1.40978 1.51358 1.67070 1.41921 1.42608 1.16476 1.20111 1.19626 1.26053 1.02490 0.98046 0.90236 1.26050 0.97195 0.95123 1.02997 1.69665 1.35506 1.10011 1.40984 0.84981 0.78491 0.77580 0.77231 1.19863 1.19490 1.19579 1.84360 1.17233 1.38429 1.70052 0.88174 0.86744 0.87312 0.78347 0.83935 0.81422 0.90020 0.89794 0.88132 0.87945 0.92023 0.96210 0.88597 0.96587 0.92034 0.90676 0.92278 0.86605 0.77054 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.51 71.24 0.75 0.13 16 2 C 0.18 3.84 8.34 88.34 0.74 4.57 16 3 N -0.52 -12.70 11.29 -303.83 -3.43 -16.13 16 4 C -0.04 -0.90 11.80 83.39 0.98 0.09 16 5 C -0.04 -0.82 5.88 24.79 0.15 -0.67 16 6 C -0.04 -0.48 4.81 29.10 0.14 -0.34 16 7 C 0.51 10.06 7.67 87.66 0.67 10.73 16 8 O -0.59 -18.58 15.61 -3.04 -0.05 -18.63 16 9 N -0.61 -9.59 2.87 -846.74 -2.43 -12.02 16 10 C 0.06 0.34 10.24 127.77 1.31 1.65 16 11 C 0.12 2.72 5.33 86.38 0.46 3.18 16 12 C 0.05 1.26 5.28 86.30 0.46 1.72 16 13 N -0.53 -17.78 4.50 -927.07 -4.17 -21.95 16 14 C 0.03 1.08 8.96 127.69 1.14 2.23 16 15 C 0.06 2.09 5.45 85.56 0.47 2.55 16 16 C 0.44 21.41 7.47 87.66 0.66 22.06 16 17 O -0.61 -34.15 13.91 -3.08 -0.04 -34.19 16 18 N -0.57 -29.83 5.29 -306.99 -1.62 -31.45 16 19 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 20 H 0.08 4.83 7.16 -2.92 -0.02 4.81 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 22 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 23 Si 0.99 43.23 29.55 68.60 2.03 45.25 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 O -0.21 -4.82 10.78 -3.79 -0.04 -4.87 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.14 0.76 7.40 -2.39 -0.02 0.75 16 33 H 0.17 0.42 8.11 -2.39 -0.02 0.40 16 34 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.08 0.45 8.07 -2.39 -0.02 0.43 16 36 H 0.10 0.00 6.44 -2.39 -0.02 -0.01 16 37 H 0.10 2.01 8.07 -2.39 -0.02 1.99 16 38 H 0.06 1.70 5.83 -2.38 -0.01 1.68 16 39 H 0.02 0.57 8.12 -2.39 -0.02 0.55 16 40 H 0.10 2.00 7.93 -2.39 -0.02 1.98 16 41 H 0.02 0.55 8.14 -2.39 -0.02 0.54 16 42 H 0.06 2.66 5.83 -2.39 -0.01 2.65 16 43 H 0.07 2.45 6.47 -2.39 -0.02 2.44 16 44 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 45 H 0.12 3.52 7.93 -2.39 -0.02 3.50 16 46 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 47 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -85.05 395.56 -0.02 -85.07 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.27 Total: 29.21 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: 9.20 Total: 29.41 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -11.38 Total: -131.26 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -0.13 Total: -57.69 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -85.05 -0.02 -85.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698989358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.714 kcal (2) G-P(sol) polarization free energy of solvation -85.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds