Wall clock time and date at job start Tue Mar 31 2020 20:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29940 * 125.37568 * 2 1 4 4 C 1.36065 * 108.47609 * 180.17078 * 3 2 1 5 5 C 1.47420 * 126.44787 * 179.82770 * 4 3 2 6 6 O 1.21611 * 120.00350 * 179.68604 * 5 4 3 7 7 N 1.34781 * 119.99984 * 359.68015 * 5 4 3 8 8 C 1.46500 * 119.99732 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47381 * 35.00069 * 8 7 5 10 10 C 1.53006 * 109.47249 * 274.99921 * 8 7 5 11 11 C 1.52999 * 109.46944 * 155.00564 * 8 7 5 12 12 C 1.53009 * 109.46984 * 294.99645 * 11 8 7 13 13 N 1.46892 * 109.47144 * 180.02562 * 12 11 8 14 14 C 1.46899 * 110.99761 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47014 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00029 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99962 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00011 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00031 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99847 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99587 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00172 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47049 * 89.99932 * 22 20 18 24 24 H 1.48497 * 109.46798 * 210.00289 * 22 20 18 25 25 H 1.48505 * 109.46843 * 329.99583 * 22 20 18 26 26 C 1.36092 * 107.10435 * 359.55842 * 4 3 2 27 27 C 1.50697 * 126.52577 * 180.24295 * 26 4 3 28 28 O 1.34044 * 125.38143 * 179.68307 * 2 1 3 29 29 H 1.09001 * 109.46325 * 180.34776 * 1 2 3 30 30 H 1.08998 * 109.46843 * 300.34616 * 1 2 3 31 31 H 1.08995 * 109.47123 * 60.34826 * 1 2 3 32 32 H 0.96998 * 119.99903 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47002 * 60.00085 * 10 8 7 34 34 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47050 * 300.00351 * 10 8 7 36 36 H 1.08997 * 109.47756 * 54.99315 * 11 8 7 37 37 H 1.09001 * 109.47317 * 175.00198 * 11 8 7 38 38 H 1.08999 * 109.47112 * 300.00392 * 12 11 8 39 39 H 1.09001 * 109.46642 * 60.00139 * 12 11 8 40 40 H 1.00903 * 111.00134 * 303.95062 * 13 12 11 41 41 H 1.08995 * 109.47488 * 299.99671 * 14 13 12 42 42 H 1.09002 * 109.47423 * 60.00461 * 14 13 12 43 43 H 0.97004 * 120.00087 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99717 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.46839 * 90.00652 * 27 26 4 46 46 H 1.08999 * 109.47068 * 209.99837 * 27 26 4 47 47 H 1.08995 * 109.47402 * 330.00608 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6640 -0.0038 5 6 4.7439 1.5440 -0.0088 6 8 5.8604 1.0621 -0.0061 7 7 4.5877 2.8827 -0.0163 8 6 5.7631 3.7572 -0.0218 9 1 6.5568 3.2954 -0.6089 10 6 6.2479 3.9690 1.4139 11 6 5.3915 5.1071 -0.6388 12 6 5.0259 4.9112 -2.1116 13 7 4.6697 6.2073 -2.7042 14 6 4.3126 6.0578 -4.1213 15 6 3.9535 7.4049 -4.6936 16 8 3.9917 8.3923 -3.9903 17 7 3.5908 7.5126 -5.9872 18 6 3.2646 8.7381 -6.5079 19 1 3.2978 9.6172 -5.8815 20 6 2.8901 8.8489 -7.8415 21 7 2.5770 10.0236 -8.3405 22 14 2.8305 7.3280 -8.9244 23 1 1.4768 6.7220 -8.8526 24 1 3.1289 7.7083 -10.3285 25 1 3.8388 6.3449 -8.4530 26 6 3.5661 -0.6969 0.0038 27 6 4.7803 -1.5895 0.0083 28 8 2.2832 -1.0929 0.0060 29 1 -0.3632 -1.0277 0.0062 30 1 -0.3633 0.5192 0.8869 31 1 -0.3633 0.5084 -0.8930 32 1 3.6971 3.2671 -0.0181 33 1 6.5126 3.0073 1.8536 34 1 7.1221 4.6200 1.4098 35 1 5.4541 4.4308 2.0011 36 1 4.5390 5.5280 -0.1058 37 1 6.2397 5.7873 -0.5624 38 1 5.8783 4.4903 -2.6447 39 1 4.1776 4.2310 -2.1879 40 1 3.9236 6.6483 -2.1875 41 1 5.1602 5.6447 -4.6680 42 1 3.4593 5.3858 -4.2120 43 1 3.5606 6.7229 -6.5497 44 1 2.3152 10.1010 -9.2713 45 1 5.0734 -1.7990 1.0371 46 1 4.5457 -2.5246 -0.5001 47 1 5.6000 -1.0905 -0.5086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699154762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:09 Heat of formation + Delta-G solvation = -57.450431 kcal Electronic energy + Delta-G solvation = -28428.550391 eV Core-core repulsion = 24226.868030 eV Total energy + Delta-G solvation = -4201.682361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.85607 -40.00431 -38.48800 -37.04009 -35.34753 -35.05811 -33.86759 -33.47989 -31.86545 -31.61551 -30.49754 -29.35403 -26.75311 -26.33881 -24.19962 -23.71549 -22.41438 -21.92797 -20.91600 -20.71552 -19.36034 -18.41349 -18.21899 -17.47933 -16.62195 -16.18494 -16.14906 -15.59539 -15.14591 -14.96020 -14.70815 -14.66022 -14.30167 -14.03221 -13.94896 -13.86540 -13.69075 -13.45111 -13.19459 -13.17185 -12.98015 -12.78736 -12.74642 -12.45207 -12.26459 -12.13070 -11.74939 -11.63684 -11.39153 -11.20437 -11.18183 -11.13401 -10.98115 -10.58550 -10.35749 -9.96595 -9.56262 -9.44317 -9.10027 -8.57336 -8.18476 -8.11641 -6.30141 -3.81414 0.69071 1.59728 2.03848 2.81052 2.98419 3.03857 3.07447 3.15640 3.45896 3.75643 4.01819 4.11362 4.16686 4.37710 4.61263 4.70479 4.77917 4.84506 4.88156 4.89271 4.97354 5.03841 5.10704 5.20007 5.21842 5.23143 5.32992 5.44765 5.49674 5.51230 5.60251 5.64150 5.66801 5.75612 5.82789 5.88819 5.91948 5.98405 6.06541 6.27136 6.98578 7.10819 7.29953 7.58717 7.60557 7.87773 8.15701 8.61060 8.96051 9.43655 9.84103 10.83030 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.002149 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.442001 B =13024.816625 C =14421.331002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.195 3.805 3 N -0.460 5.460 4 C -0.078 4.078 5 C 0.605 3.395 6 O -0.536 6.536 7 N -0.706 5.706 8 C 0.143 3.857 9 H 0.092 0.908 10 C -0.162 4.162 11 C -0.125 4.125 12 C 0.059 3.941 13 N -0.669 5.669 14 C 0.048 3.952 15 C 0.451 3.549 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.040 3.960 27 C -0.076 4.076 28 O -0.198 6.198 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.409 0.591 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.027 0.973 40 H 0.350 0.650 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 -26.522 19.050 32.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.014 4.014 3 N -0.190 5.190 4 C -0.198 4.198 5 C 0.391 3.609 6 O -0.414 6.414 7 N -0.357 5.357 8 C 0.038 3.962 9 H 0.110 0.890 10 C -0.220 4.220 11 C -0.163 4.163 12 C -0.071 4.071 13 N -0.301 5.301 14 C -0.085 4.085 15 C 0.236 3.764 16 O -0.446 6.446 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.017 4.017 27 C -0.133 4.133 28 O -0.085 6.085 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.244 0.756 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.169 0.831 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.916 -25.235 19.202 31.723 hybrid contribution -1.316 -1.988 -1.045 2.604 sum -0.400 -27.223 18.157 32.725 Atomic orbital electron populations 1.20326 0.80708 1.04976 1.05499 1.26242 0.96521 0.78159 1.00493 1.70724 1.00645 1.29990 1.17633 1.21492 0.92230 0.92293 1.13740 1.16673 0.86104 0.81954 0.76161 1.90779 1.24231 1.75256 1.51119 1.45941 1.10814 1.05171 1.73746 1.21068 0.87904 0.90011 0.97195 0.88952 1.22161 1.01636 1.02321 0.95900 1.21883 1.03538 0.95731 0.95175 1.21974 0.99994 0.90655 0.94457 1.60056 1.47178 1.21083 1.01791 1.21700 0.99984 0.96394 0.90391 1.19717 0.83712 0.90084 0.82866 1.90559 1.56347 1.38554 1.59169 1.42215 1.61830 1.09524 1.09515 1.19435 1.42193 0.86269 0.95421 0.86272 1.25041 0.97481 0.96963 0.96718 1.69623 1.44970 1.22525 1.15056 0.86669 0.78777 0.82781 0.81161 1.19678 1.20157 1.19471 1.23747 0.83897 0.94545 0.99468 1.20607 0.90205 0.97768 1.04695 1.84341 1.16397 1.38030 1.69747 0.89187 0.88203 0.88107 0.75580 0.92153 0.91141 0.92344 0.91159 0.88860 0.91065 0.95503 0.83078 0.89528 0.93866 0.79696 0.91630 0.88999 0.90098 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.19 1.66 8.30 -13.08 -0.11 1.55 16 3 N -0.46 -4.88 11.06 -7.65 -0.08 -4.97 16 4 C -0.08 -0.86 6.99 -83.02 -0.58 -1.44 16 5 C 0.61 7.01 7.78 -12.52 -0.10 6.91 16 6 O -0.54 -7.03 14.47 5.27 0.08 -6.95 16 7 N -0.71 -7.04 4.53 -54.88 -0.25 -7.28 16 8 C 0.14 1.34 2.57 -67.93 -0.17 1.16 16 9 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 10 C -0.16 -1.37 9.48 37.16 0.35 -1.01 16 11 C -0.13 -1.21 5.01 -26.73 -0.13 -1.35 16 12 C 0.06 0.70 5.57 -3.82 -0.02 0.68 16 13 N -0.67 -10.46 6.13 -115.06 -0.70 -11.16 16 14 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 15 C 0.45 10.42 7.82 -10.98 -0.09 10.34 16 16 O -0.56 -15.36 15.78 5.55 0.09 -15.28 16 17 N -0.59 -14.33 5.09 -10.96 -0.06 -14.39 16 18 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.95 13.96 55.50 0.77 -25.18 16 22 Si 0.88 19.57 27.74 -169.99 -4.72 14.86 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 26 C 0.04 0.38 7.44 -35.08 -0.26 0.12 16 27 C -0.08 -0.52 9.88 36.00 0.36 -0.17 16 28 O -0.20 -1.80 10.73 6.51 0.07 -1.73 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.41 3.86 8.33 -40.82 -0.34 3.52 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.31 7.75 -51.93 -0.40 -0.09 16 40 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.11 0.91 6.48 -51.93 -0.34 0.57 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -35.68 399.26 -6.53 -42.21 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -7.09 Total: 13.95 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.66 Total: 9.90 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.32 Total: -62.98 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.23 Total: -23.96 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.72 Total: 14.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.68 -6.53 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699154762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.240 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds