Wall clock time and date at job start Tue Mar 31 2020 20:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29940 * 125.37568 * 2 1 4 4 C 1.36065 * 108.47609 * 180.17078 * 3 2 1 5 5 C 1.47420 * 126.44787 * 179.82770 * 4 3 2 6 6 O 1.21611 * 120.00350 * 179.68604 * 5 4 3 7 7 N 1.34781 * 119.99984 * 359.68015 * 5 4 3 8 8 C 1.46500 * 119.99732 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47381 * 35.00069 * 8 7 5 10 10 C 1.53006 * 109.47249 * 274.99921 * 8 7 5 11 11 C 1.52999 * 109.46944 * 155.00564 * 8 7 5 12 12 C 1.53009 * 109.46984 * 294.99645 * 11 8 7 13 13 N 1.46892 * 109.47144 * 180.02562 * 12 11 8 14 14 C 1.46899 * 110.99761 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47014 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00029 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99962 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00011 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00031 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99847 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99587 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00172 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47049 * 89.99932 * 22 20 18 24 24 H 1.48497 * 109.46798 * 210.00289 * 22 20 18 25 25 H 1.48505 * 109.46843 * 329.99583 * 22 20 18 26 26 C 1.36092 * 107.10435 * 359.55842 * 4 3 2 27 27 C 1.50697 * 126.52577 * 180.24295 * 26 4 3 28 28 O 1.34044 * 125.38143 * 179.68307 * 2 1 3 29 29 H 1.09001 * 109.46325 * 180.34776 * 1 2 3 30 30 H 1.08998 * 109.46843 * 300.34616 * 1 2 3 31 31 H 1.08995 * 109.47123 * 60.34826 * 1 2 3 32 32 H 0.96998 * 119.99903 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47002 * 60.00085 * 10 8 7 34 34 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47050 * 300.00351 * 10 8 7 36 36 H 1.08997 * 109.47756 * 54.99315 * 11 8 7 37 37 H 1.09001 * 109.47317 * 175.00198 * 11 8 7 38 38 H 1.08999 * 109.47112 * 300.00392 * 12 11 8 39 39 H 1.09001 * 109.46642 * 60.00139 * 12 11 8 40 40 H 1.00903 * 111.00134 * 303.95062 * 13 12 11 41 41 H 1.08995 * 109.47488 * 299.99671 * 14 13 12 42 42 H 1.09002 * 109.47423 * 60.00461 * 14 13 12 43 43 H 0.97004 * 120.00087 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99717 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.46839 * 90.00652 * 27 26 4 46 46 H 1.08999 * 109.47068 * 209.99837 * 27 26 4 47 47 H 1.08995 * 109.47402 * 330.00608 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6640 -0.0038 5 6 4.7439 1.5440 -0.0088 6 8 5.8604 1.0621 -0.0061 7 7 4.5877 2.8827 -0.0163 8 6 5.7631 3.7572 -0.0218 9 1 6.5568 3.2954 -0.6089 10 6 6.2479 3.9690 1.4139 11 6 5.3915 5.1071 -0.6388 12 6 5.0259 4.9112 -2.1116 13 7 4.6697 6.2073 -2.7042 14 6 4.3126 6.0578 -4.1213 15 6 3.9535 7.4049 -4.6936 16 8 3.9917 8.3923 -3.9903 17 7 3.5908 7.5126 -5.9872 18 6 3.2646 8.7381 -6.5079 19 1 3.2978 9.6172 -5.8815 20 6 2.8901 8.8489 -7.8415 21 7 2.5770 10.0236 -8.3405 22 14 2.8305 7.3280 -8.9244 23 1 1.4768 6.7220 -8.8526 24 1 3.1289 7.7083 -10.3285 25 1 3.8388 6.3449 -8.4530 26 6 3.5661 -0.6969 0.0038 27 6 4.7803 -1.5895 0.0083 28 8 2.2832 -1.0929 0.0060 29 1 -0.3632 -1.0277 0.0062 30 1 -0.3633 0.5192 0.8869 31 1 -0.3633 0.5084 -0.8930 32 1 3.6971 3.2671 -0.0181 33 1 6.5126 3.0073 1.8536 34 1 7.1221 4.6200 1.4098 35 1 5.4541 4.4308 2.0011 36 1 4.5390 5.5280 -0.1058 37 1 6.2397 5.7873 -0.5624 38 1 5.8783 4.4903 -2.6447 39 1 4.1776 4.2310 -2.1879 40 1 3.9236 6.6483 -2.1875 41 1 5.1602 5.6447 -4.6680 42 1 3.4593 5.3858 -4.2120 43 1 3.5606 6.7229 -6.5497 44 1 2.3152 10.1010 -9.2713 45 1 5.0734 -1.7990 1.0371 46 1 4.5457 -2.5246 -0.5001 47 1 5.6000 -1.0905 -0.5086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699154762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:08 Heat of formation + Delta-G solvation = -88.275473 kcal Electronic energy + Delta-G solvation = -28429.887065 eV Core-core repulsion = 24226.868030 eV Total energy + Delta-G solvation = -4203.019035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.52351 -40.84922 -40.31027 -38.03140 -36.35901 -36.02926 -35.74831 -34.06942 -33.76465 -32.69232 -30.95721 -30.39798 -27.90901 -27.35745 -25.65072 -24.63075 -23.34347 -22.72677 -21.71282 -21.48663 -21.26903 -20.27162 -19.05624 -18.14849 -17.82850 -17.49642 -17.03811 -16.85324 -16.66515 -15.99935 -15.81466 -15.49453 -15.38545 -15.15146 -15.00991 -14.94688 -14.51833 -14.44257 -14.32718 -14.05903 -13.87727 -13.64255 -13.56779 -13.52505 -13.29425 -13.21357 -12.97804 -12.83505 -12.43012 -12.38169 -12.27406 -12.08687 -11.98773 -11.92139 -11.79496 -11.52790 -11.19706 -10.47532 -10.26358 -10.23830 -9.77897 -9.35857 -8.42334 -6.03277 -0.01817 0.90547 1.29695 1.34257 1.43050 1.43597 1.93220 2.05294 2.17341 2.21925 2.67762 2.87034 3.13844 3.33958 3.54741 3.67499 3.87094 4.00398 4.12598 4.14241 4.18555 4.31122 4.39585 4.41254 4.47769 4.54212 4.57583 4.63901 4.63917 4.66396 4.76861 4.79127 4.88160 4.92737 5.02042 5.11062 5.16974 5.20929 5.30042 5.48553 5.51464 5.88652 6.01734 6.25822 6.37434 6.55013 6.58295 6.86420 7.05738 7.37907 7.93934 8.75255 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.002149 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.442001 B =13024.816625 C =14421.331002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.197 3.803 3 N -0.485 5.485 4 C -0.105 4.105 5 C 0.602 3.398 6 O -0.558 6.558 7 N -0.700 5.700 8 C 0.148 3.852 9 H 0.083 0.917 10 C -0.157 4.157 11 C -0.115 4.115 12 C 0.064 3.936 13 N -0.684 5.684 14 C 0.061 3.939 15 C 0.449 3.551 16 O -0.613 6.613 17 N -0.591 5.591 18 C -0.329 4.329 19 H 0.056 0.944 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.233 1.233 26 C 0.038 3.962 27 C -0.074 4.074 28 O -0.200 6.200 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.411 0.589 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.346 0.654 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -30.118 18.809 35.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.012 4.012 3 N -0.215 5.215 4 C -0.224 4.224 5 C 0.388 3.612 6 O -0.438 6.438 7 N -0.350 5.350 8 C 0.044 3.956 9 H 0.101 0.899 10 C -0.215 4.215 11 C -0.153 4.153 12 C -0.065 4.065 13 N -0.317 5.317 14 C -0.071 4.071 15 C 0.237 3.763 16 O -0.497 6.497 17 N -0.233 5.233 18 C -0.458 4.458 19 H 0.074 0.926 20 C -0.214 4.214 21 N -0.574 5.574 22 Si 0.785 3.215 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.157 1.157 26 C -0.019 4.019 27 C -0.130 4.130 28 O -0.087 6.087 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.248 0.752 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.165 0.835 41 H 0.128 0.872 42 H 0.091 0.909 43 H 0.225 0.775 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.509 -28.841 18.983 34.531 hybrid contribution -1.221 -0.785 -0.863 1.689 sum -0.713 -29.626 18.120 34.735 Atomic orbital electron populations 1.20598 0.77701 1.06704 1.06414 1.27186 0.97927 0.77560 0.98572 1.70704 1.00663 1.31025 1.19119 1.21553 0.92410 0.92961 1.15479 1.16824 0.86088 0.82372 0.75883 1.90758 1.25019 1.75671 1.52338 1.45925 1.11096 1.04843 1.73166 1.21012 0.87448 0.89502 0.97634 0.89928 1.22109 1.02292 1.01972 0.95105 1.21787 1.03804 0.95817 0.93924 1.22001 1.00195 0.88911 0.95386 1.60065 1.47127 1.23258 1.01216 1.21620 1.02001 0.92363 0.91132 1.20936 0.81318 0.92008 0.82066 1.90537 1.57724 1.41160 1.60290 1.42045 1.62314 1.08569 1.10341 1.19015 1.44603 0.86490 0.95733 0.92571 1.26117 0.95881 1.01450 0.97916 1.69802 1.45735 1.25872 1.15955 0.85367 0.80380 0.77868 0.77931 1.18042 1.19925 1.15681 1.24193 0.84693 0.94575 0.98415 1.20675 0.88752 0.98030 1.05544 1.84368 1.16276 1.38285 1.69812 0.87086 0.86950 0.87269 0.75232 0.93297 0.89994 0.91746 0.90464 0.88847 0.90830 0.94807 0.83542 0.87194 0.90855 0.77510 0.91100 0.87805 0.87935 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 71.24 0.75 0.43 16 2 C 0.20 3.05 8.30 88.39 0.73 3.79 16 3 N -0.48 -9.85 11.06 -293.04 -3.24 -13.09 16 4 C -0.11 -2.28 6.99 40.41 0.28 -1.99 16 5 C 0.60 13.70 7.78 86.66 0.67 14.37 16 6 O -0.56 -14.56 14.47 -4.07 -0.06 -14.62 16 7 N -0.70 -13.34 4.53 -445.79 -2.02 -15.36 16 8 C 0.15 2.61 2.57 44.99 0.12 2.73 16 9 H 0.08 1.66 7.58 -2.39 -0.02 1.64 16 10 C -0.16 -2.47 9.48 71.98 0.68 -1.78 16 11 C -0.12 -2.05 5.01 30.60 0.15 -1.89 16 12 C 0.06 1.38 5.57 86.31 0.48 1.86 16 13 N -0.68 -20.24 6.13 -517.93 -3.17 -23.41 16 14 C 0.06 1.94 6.17 85.56 0.53 2.46 16 15 C 0.45 20.62 7.82 87.66 0.69 21.31 16 16 O -0.61 -34.36 15.78 -3.04 -0.05 -34.41 16 17 N -0.59 -28.32 5.09 -306.98 -1.56 -29.88 16 18 C -0.33 -19.49 10.16 84.04 0.85 -18.64 16 19 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 20 C -0.01 -0.83 5.50 84.93 0.47 -0.37 16 21 N -0.93 -56.54 13.96 21.66 0.30 -56.23 16 22 Si 0.96 39.10 27.74 68.60 1.90 41.00 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 26 C 0.04 0.70 7.44 25.19 0.19 0.88 16 27 C -0.07 -0.92 9.88 71.23 0.70 -0.22 16 28 O -0.20 -3.35 10.73 0.38 0.00 -3.34 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.41 7.36 8.33 -92.71 -0.77 6.59 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.03 0.70 7.75 -2.39 -0.02 0.68 16 40 H 0.35 10.72 8.43 -89.69 -0.76 9.96 16 41 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.39 15.49 5.76 -92.71 -0.53 14.96 16 44 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.10 1.57 6.48 -2.39 -0.02 1.55 16 Total: -1.00 -82.44 399.26 -1.69 -84.13 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: -1.10 Total: 42.27 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 7.30 Total: 22.94 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -9.69 Total: -137.97 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -0.10 Total: -52.37 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.90 Total: 41.00 kcal Total: -82.44 -1.69 -84.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699154762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.150 kcal (2) G-P(sol) polarization free energy of solvation -82.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds