Wall clock time and date at job start Tue Mar 31 2020 22:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47308 * 2 1 4 4 N 1.30015 * 127.33469 * 270.14385 * 3 2 1 5 5 O 1.20660 * 112.30207 * 180.30050 * 4 3 2 6 6 C 1.33491 * 113.15261 * 359.71628 * 5 4 3 7 7 C 1.50703 * 126.82533 * 179.97438 * 6 5 4 8 8 C 1.37361 * 106.34598 * 0.02562 * 6 5 4 9 9 C 1.47396 * 128.56536 * 179.97438 * 8 6 5 10 10 O 1.21609 * 120.00024 * 90.02135 * 9 8 6 11 11 N 1.34773 * 119.99887 * 270.02526 * 9 8 6 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47194 * 34.71875 * 12 11 9 14 14 C 1.52997 * 109.46691 * 274.72265 * 12 11 9 15 15 C 1.52993 * 109.47100 * 154.71955 * 12 11 9 16 16 N 1.46895 * 109.47819 * 304.99878 * 15 12 11 17 17 C 1.46890 * 111.00488 * 180.02562 * 16 15 12 18 18 C 1.50705 * 109.47580 * 179.97438 * 17 16 15 19 19 O 1.21300 * 119.99236 * 0.02562 * 18 17 16 20 20 N 1.34767 * 120.00353 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99863 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00455 * 0.02562 * 21 20 18 23 23 C 1.38957 * 119.99963 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99796 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00068 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46851 * 60.00157 * 25 23 21 27 27 H 1.48500 * 109.47124 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47314 * 300.00503 * 25 23 21 29 29 H 1.09000 * 109.47029 * 60.00480 * 1 2 3 30 30 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47089 * 300.00472 * 1 2 3 32 32 H 1.09002 * 109.47528 * 239.99361 * 2 1 3 33 33 H 1.09006 * 109.47259 * 120.00187 * 2 1 3 34 34 H 1.08997 * 109.46903 * 270.02767 * 7 6 5 35 35 H 1.08995 * 109.46946 * 30.02425 * 7 6 5 36 36 H 1.08999 * 109.46884 * 150.02514 * 7 6 5 37 37 H 0.97005 * 120.00161 * 359.72167 * 11 9 8 38 38 H 1.09001 * 109.47659 * 299.99430 * 14 12 11 39 39 H 1.08995 * 109.47574 * 60.00208 * 14 12 11 40 40 H 1.09002 * 109.46832 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.47378 * 65.00377 * 15 12 11 42 42 H 1.09004 * 109.46895 * 184.99596 * 15 12 11 43 43 H 1.00909 * 110.99812 * 56.04187 * 16 15 12 44 44 H 1.08996 * 109.47333 * 299.99866 * 17 16 15 45 45 H 1.08997 * 109.47417 * 60.00044 * 17 16 15 46 46 H 0.96998 * 120.00558 * 0.02562 * 20 18 17 47 47 H 0.97003 * 119.99417 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2927 2.1651 -1.0338 5 8 2.6875 3.2615 -0.7208 6 6 2.7524 3.4385 0.6007 7 6 3.2010 4.6819 1.3245 8 6 2.3303 2.2617 1.1696 9 6 2.2107 1.9232 2.5992 10 8 1.1701 2.1394 3.1903 11 7 3.2545 1.3741 3.2512 12 6 3.1355 1.0370 4.6720 13 1 2.1191 0.7044 4.8826 14 6 3.4534 2.2720 5.5174 15 6 4.1199 -0.0829 5.0147 16 7 3.8920 -1.2259 4.1206 17 6 4.8210 -2.3232 4.4215 18 6 4.5572 -3.4755 3.4868 19 8 3.6816 -3.3906 2.6517 20 7 5.2948 -4.5997 3.5781 21 6 5.0551 -5.6478 2.7273 22 1 4.2755 -5.5723 1.9837 23 6 5.8159 -6.8068 2.8210 24 7 6.7648 -6.8984 3.7255 25 14 5.4888 -8.2350 1.6623 26 1 5.6854 -7.7893 0.2595 27 1 6.4285 -9.3441 1.9662 28 1 4.0922 -8.7072 1.8405 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.2760 4.6336 1.4977 35 1 2.9696 5.5582 0.7190 36 1 2.6818 4.7532 2.2802 37 1 4.0832 1.1979 2.7788 38 1 4.4699 2.6047 5.3069 39 1 2.7521 3.0698 5.2733 40 1 3.3644 2.0214 6.5744 41 1 5.1403 0.2791 4.8888 42 1 3.9700 -0.3946 6.0484 43 1 3.9616 -0.9477 3.1531 44 1 5.8464 -1.9771 4.2917 45 1 4.6756 -2.6504 5.4510 46 1 5.9952 -4.6675 4.2456 47 1 7.2957 -7.7076 3.7911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699390114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:58 Heat of formation + Delta-G solvation = -49.406560 kcal Electronic energy + Delta-G solvation = -29536.946618 eV Core-core repulsion = 25335.613065 eV Total energy + Delta-G solvation = -4201.333553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.98543 -40.93538 -40.10569 -37.90885 -36.38701 -36.02562 -35.12047 -34.66267 -33.25244 -32.52666 -31.92967 -29.00337 -28.89416 -26.73697 -26.22039 -25.04016 -24.52355 -22.43709 -21.61010 -21.09643 -20.86801 -19.91532 -19.20065 -18.83929 -17.88985 -17.60809 -17.22508 -16.86945 -16.38002 -16.21014 -15.94838 -15.65966 -15.42964 -15.30535 -15.04548 -15.02949 -14.32720 -14.31265 -14.13183 -14.03088 -13.75881 -13.55840 -13.52394 -13.34493 -13.09379 -13.02093 -12.78919 -12.69910 -12.65102 -12.54518 -12.43098 -12.13455 -11.95715 -11.90433 -11.49861 -11.34550 -11.02524 -10.44937 -10.36627 -10.19776 -10.00941 -9.32650 -8.46800 -5.95005 0.26519 0.78839 1.26405 1.39084 1.41356 1.51687 1.79186 2.06523 2.22250 2.28792 2.88438 2.99101 3.20656 3.21019 3.49732 3.70756 3.84463 3.90328 4.06356 4.18685 4.20406 4.25664 4.28040 4.35833 4.39792 4.50812 4.60303 4.60641 4.65616 4.70537 4.75373 4.77919 4.81343 4.87728 4.95857 5.07562 5.07928 5.14224 5.31481 5.40915 5.43079 5.86720 6.08848 6.33319 6.36654 6.60707 7.03845 7.13176 7.16795 7.57353 8.12837 8.70330 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.002746 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.680150 B =10193.434385 C =11694.259183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C 0.053 3.947 4 N -0.375 5.375 5 O 0.097 5.903 6 C 0.035 3.965 7 C -0.078 4.078 8 C -0.277 4.277 9 C 0.612 3.388 10 O -0.562 6.562 11 N -0.699 5.699 12 C 0.145 3.855 13 H 0.070 0.930 14 C -0.152 4.152 15 C 0.055 3.945 16 N -0.687 5.687 17 C 0.065 3.935 18 C 0.435 3.565 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.408 0.592 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.341 0.659 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 23.667 1.440 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.109 4.109 4 N -0.081 5.081 5 O 0.036 5.964 6 C -0.029 4.029 7 C -0.135 4.135 8 C -0.284 4.284 9 C 0.397 3.603 10 O -0.440 6.440 11 N -0.350 5.350 12 C 0.041 3.959 13 H 0.089 0.911 14 C -0.211 4.211 15 C -0.074 4.074 16 N -0.320 5.320 17 C -0.067 4.067 18 C 0.223 3.777 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.244 0.756 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.121 0.879 43 H 0.160 0.840 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.772 23.285 0.455 23.454 hybrid contribution 1.163 -1.083 -0.157 1.597 sum -1.608 22.203 0.299 22.263 Atomic orbital electron populations 1.21642 0.92954 1.03141 1.01870 1.20022 0.97370 0.87222 1.04311 1.24948 1.00165 0.98896 0.86895 1.73603 1.17571 0.93212 1.23750 1.84510 1.62237 1.26345 1.23340 1.25321 0.96438 0.98008 0.83149 1.20733 1.04146 0.89486 0.99089 1.21925 1.15083 0.96520 0.94880 1.16815 0.83137 0.76605 0.83790 1.90797 1.29741 1.54734 1.68751 1.45947 1.15628 1.61679 1.11712 1.21129 1.00503 0.94981 0.79295 0.91143 1.22071 1.02602 0.96054 1.00325 1.22397 0.97705 0.88695 0.98601 1.59987 1.54627 1.08505 1.08870 1.21552 0.95626 0.90266 0.99279 1.20948 0.83935 0.85276 0.87538 1.90499 1.36104 1.83042 1.41213 1.41914 1.32941 1.13284 1.32883 1.19608 1.18220 0.94166 1.14318 0.90437 1.25989 0.95311 1.00799 0.99022 1.69658 1.21455 1.30069 1.34879 0.85043 0.78233 0.77213 0.78201 1.19710 1.19467 1.19872 0.92021 0.90460 0.93289 0.89233 0.90067 0.86131 0.86866 0.88747 0.75605 0.90408 0.92976 0.89749 0.92128 0.87941 0.84007 0.91033 0.87513 0.76938 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.89 71.98 0.71 -2.81 16 2 C -0.05 -1.41 6.54 29.85 0.20 -1.21 16 3 C 0.05 1.44 6.84 45.16 0.31 1.75 16 4 N -0.37 -10.19 12.01 -44.78 -0.54 -10.72 16 5 O 0.10 2.17 11.06 77.00 0.85 3.02 16 6 C 0.03 0.64 7.55 25.48 0.19 0.83 16 7 C -0.08 -0.65 10.33 71.24 0.74 0.09 16 8 C -0.28 -6.68 6.24 -18.75 -0.12 -6.80 16 9 C 0.61 15.52 7.57 86.66 0.66 16.18 16 10 O -0.56 -18.25 16.76 -4.06 -0.07 -18.32 16 11 N -0.70 -13.94 4.35 -445.84 -1.94 -15.88 16 12 C 0.15 2.77 2.88 44.99 0.13 2.90 16 13 H 0.07 1.81 7.57 -2.39 -0.02 1.79 16 14 C -0.15 -2.02 9.49 71.98 0.68 -1.34 16 15 C 0.05 1.01 5.30 86.30 0.46 1.46 16 16 N -0.69 -19.55 6.12 -517.97 -3.17 -22.72 16 17 C 0.06 2.03 6.17 85.56 0.53 2.56 16 18 C 0.44 19.99 7.82 87.66 0.69 20.68 16 19 O -0.62 -33.62 15.78 -3.09 -0.05 -33.67 16 20 N -0.57 -28.67 5.29 -306.98 -1.62 -30.29 16 21 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 22 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.01 13.05 21.67 0.28 -48.73 16 25 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.11 0.49 8.14 -2.39 -0.02 0.48 16 36 H 0.09 0.85 8.11 -2.39 -0.02 0.84 16 37 H 0.41 6.80 8.14 -92.70 -0.75 6.05 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.34 10.32 7.28 -89.69 -0.65 9.66 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 46 H 0.40 18.74 7.90 -92.71 -0.73 18.00 16 47 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -75.53 405.55 1.10 -74.42 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -1.12 Total: 41.90 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.45 Total: 16.25 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -6.99 Total: -128.34 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: 0.73 Total: -48.97 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -75.53 1.10 -74.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699390114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.015 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds