Wall clock time and date at job start Tue Mar 31 2020 21:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35308 * 128.04209 * 2 1 4 4 O 1.34017 * 106.67141 * 180.23680 * 3 2 1 5 5 N 1.20901 * 111.84286 * 359.74395 * 4 3 2 6 6 C 1.30987 * 111.44226 * 0.02562 * 5 4 3 7 7 C 1.48331 * 126.93891 * 179.97438 * 6 5 4 8 8 O 1.21494 * 119.99836 * 185.90887 * 7 6 5 9 9 N 1.34781 * 120.00157 * 5.90401 * 7 6 5 10 10 C 1.46508 * 119.99617 * 5.09832 * 9 7 6 11 11 C 1.46497 * 120.00297 * 185.36802 * 9 7 6 12 12 C 1.53005 * 109.47019 * 269.72887 * 11 9 7 13 13 C 1.53002 * 109.46717 * 179.97438 * 12 11 9 14 14 N 1.46900 * 109.46933 * 180.02562 * 13 12 11 15 15 C 1.46898 * 111.00250 * 66.04579 * 14 13 12 16 16 C 1.46903 * 111.00207 * 189.99995 * 14 13 12 17 17 C 1.50697 * 109.47329 * 169.99826 * 16 14 13 18 18 O 1.21298 * 119.99987 * 359.97438 * 17 16 14 19 19 N 1.34773 * 120.00035 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99895 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00308 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99793 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00188 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99840 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46939 * 60.00414 * 24 22 20 26 26 H 1.48507 * 109.47263 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47394 * 300.00472 * 24 22 20 28 28 H 1.08991 * 109.47308 * 270.16429 * 1 2 3 29 29 H 1.09000 * 109.46776 * 30.16907 * 1 2 3 30 30 H 1.09002 * 109.47013 * 150.16379 * 1 2 3 31 31 H 1.08006 * 126.66696 * 359.94456 * 3 2 1 32 32 H 1.08994 * 109.46996 * 275.63512 * 10 9 7 33 33 H 1.08997 * 109.46940 * 35.63812 * 10 9 7 34 34 H 1.09002 * 109.46615 * 155.63902 * 10 9 7 35 35 H 1.09000 * 109.46953 * 29.72648 * 11 9 7 36 36 H 1.09002 * 109.47285 * 149.72832 * 11 9 7 37 37 H 1.08994 * 109.47209 * 300.00088 * 12 11 9 38 38 H 1.08997 * 109.46811 * 60.00504 * 12 11 9 39 39 H 1.09000 * 109.47379 * 299.99837 * 13 12 11 40 40 H 1.09002 * 109.47160 * 60.00206 * 13 12 11 41 41 H 1.09007 * 109.46994 * 59.99885 * 15 14 13 42 42 H 1.08999 * 109.47389 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.47271 * 300.00297 * 15 14 13 44 44 H 1.08990 * 109.47128 * 290.00202 * 16 14 13 45 45 H 1.09001 * 109.46560 * 50.00112 * 16 14 13 46 46 H 0.97001 * 120.00064 * 0.02562 * 19 17 16 47 47 H 0.96994 * 119.99804 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0656 0.0000 4 8 3.5888 0.5773 -0.0053 5 7 3.5988 -0.6317 -0.0034 6 6 2.3836 -1.1206 0.0028 7 6 1.9991 -2.5532 0.0063 8 8 0.8303 -2.8687 -0.0963 9 7 2.9463 -3.5049 0.1231 10 6 4.3415 -3.1247 0.3586 11 6 2.5818 -4.9191 0.0087 12 6 2.2301 -5.4687 1.3927 13 6 1.8488 -6.9456 1.2730 14 7 1.5106 -7.4732 2.6017 15 6 0.2934 -6.8393 3.1256 16 6 1.3699 -8.9350 2.5675 17 6 1.2682 -9.4630 3.9753 18 8 1.3095 -8.6968 4.9148 19 7 1.1326 -10.7865 4.1906 20 6 1.0406 -11.2668 5.4714 21 1 1.0765 -10.5846 6.3079 22 6 0.9002 -12.6313 5.6932 23 7 0.8561 -13.4614 4.6754 24 14 0.7743 -13.2856 7.4383 25 1 -0.4108 -12.6898 8.1060 26 1 0.6326 -14.7635 7.4038 27 1 2.0013 -12.9239 8.1925 28 1 -0.3633 0.0029 1.0276 29 1 -0.3633 0.8885 -0.5165 30 1 -0.3633 -0.8915 -0.5113 31 1 2.0560 2.1075 -0.0008 32 1 4.8216 -2.8972 -0.5930 33 1 4.3748 -2.2455 1.0019 34 1 4.8658 -3.9489 0.8423 35 1 1.7206 -5.0201 -0.6519 36 1 3.4222 -5.4790 -0.4018 37 1 3.0912 -5.3678 2.0532 38 1 1.3897 -4.9090 1.8030 39 1 0.9875 -7.0462 0.6126 40 1 2.6889 -7.5057 0.8624 41 1 -0.5386 -7.0359 2.4493 42 1 0.0660 -7.2477 4.1103 43 1 0.4497 -5.7636 3.2061 44 1 0.4693 -9.2005 2.0140 45 1 2.2397 -9.3723 2.0774 46 1 1.1007 -11.3993 3.4393 47 1 0.7584 -14.4139 4.8303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700194724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:43 Heat of formation + Delta-G solvation = 9.322334 kcal Electronic energy + Delta-G solvation = -28604.130552 eV Core-core repulsion = 24405.343675 eV Total energy + Delta-G solvation = -4198.786877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.51424 -40.17765 -38.60981 -36.94383 -35.96080 -35.11788 -33.87238 -33.07023 -31.75471 -31.18913 -28.64037 -27.95545 -27.34999 -26.70216 -25.12410 -24.16834 -22.69771 -22.07937 -20.74914 -20.17341 -19.09611 -18.24328 -18.09368 -17.80106 -17.09245 -16.54343 -15.89143 -15.74967 -15.44534 -14.93042 -14.68518 -14.58527 -14.22729 -14.00546 -13.76367 -13.71435 -13.61791 -13.34929 -13.29607 -13.23198 -13.04925 -12.39402 -12.23883 -11.99383 -11.98459 -11.67703 -11.56333 -11.43178 -11.19895 -11.14468 -10.86783 -10.68632 -10.58738 -10.42271 -10.41456 -10.18462 -9.87860 -9.43692 -9.05079 -8.39802 -7.94116 -7.79157 -6.38661 -3.79331 0.71566 1.23681 2.40134 2.71681 2.77561 3.22119 3.27406 3.31975 3.47663 3.94579 4.00994 4.07177 4.28554 4.38742 4.60548 4.73708 4.85157 4.91146 5.04620 5.09771 5.17890 5.21153 5.24841 5.25561 5.28357 5.34614 5.41231 5.51049 5.52035 5.65789 5.77190 5.81148 5.84986 5.98030 6.03810 6.05522 6.15331 6.27738 6.33778 6.64742 6.88704 7.34664 7.45991 7.50376 7.57948 7.73251 8.09750 8.65667 9.21366 9.58138 10.10513 10.79103 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.001679 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.439414 B =16675.645102 C =16837.674872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.150 4.150 3 C -0.066 4.066 4 O 0.119 5.881 5 N -0.327 5.327 6 C -0.026 4.026 7 C 0.595 3.405 8 O -0.517 6.517 9 N -0.600 5.600 10 C 0.078 3.922 11 C 0.118 3.882 12 C -0.130 4.130 13 C 0.058 3.942 14 N -0.519 5.519 15 C 0.022 3.978 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.223 0.777 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.014 0.986 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 26.586 -15.227 30.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.155 4.155 3 C -0.147 4.147 4 O 0.045 5.955 5 N -0.029 5.029 6 C -0.185 4.185 7 C 0.381 3.619 8 O -0.391 6.391 9 N -0.332 5.332 10 C -0.065 4.065 11 C -0.004 4.004 12 C -0.169 4.169 13 C -0.071 4.071 14 N -0.243 5.243 15 C -0.126 4.126 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.240 0.760 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.032 0.968 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.988 26.182 -14.335 30.263 hybrid contribution -1.367 -0.758 -0.177 1.573 sum 3.621 25.423 -14.512 29.496 Atomic orbital electron populations 1.20253 0.86476 1.04043 1.03393 1.21395 0.99213 0.90083 1.04810 1.25792 0.82317 1.01338 1.05234 1.84785 1.29560 1.15516 1.65688 1.74356 1.21393 0.91417 1.15685 1.23438 0.89589 0.97090 1.08383 1.16944 0.85294 0.82399 0.77306 1.90793 1.17309 1.81363 1.49620 1.47717 1.08602 1.06552 1.70366 1.22018 0.80623 1.01910 1.01957 1.21587 1.01853 0.78685 0.98314 1.21926 1.02881 0.95665 0.96449 1.22023 0.99917 0.94817 0.90293 1.61552 1.36501 1.03900 1.22324 1.22554 0.88913 0.99271 1.01854 1.21861 1.01175 0.88391 0.97126 1.19758 0.84208 0.83167 0.89870 1.90483 1.55268 1.56444 1.43963 1.41862 1.63944 1.05385 1.09009 1.19649 1.46922 0.91543 0.84691 0.87997 1.25255 0.97417 0.95846 0.99465 1.69606 1.50345 1.03843 1.30626 0.85920 0.79038 0.77332 0.81924 1.19952 1.21006 1.19922 0.90421 0.90923 0.89292 0.76036 0.92080 0.90243 0.90281 0.89660 0.89840 0.90757 0.91141 0.94973 0.90850 0.96781 0.88731 0.92156 0.93506 0.89448 0.77502 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.06 36.01 0.36 -0.22 16 2 C -0.15 -1.21 6.34 -104.12 -0.66 -1.87 16 3 C -0.07 -0.35 12.24 29.69 0.36 0.02 16 4 O 0.12 0.88 11.18 17.24 0.19 1.07 16 5 N -0.33 -3.07 8.96 33.29 0.30 -2.77 16 6 C -0.03 -0.27 6.80 -82.53 -0.56 -0.83 16 7 C 0.60 7.26 7.69 -12.11 -0.09 7.16 16 8 O -0.52 -7.48 14.94 5.37 0.08 -7.40 16 9 N -0.60 -6.32 2.87 -182.50 -0.52 -6.85 16 10 C 0.08 0.65 9.33 59.85 0.56 1.21 16 11 C 0.12 1.19 5.35 -4.04 -0.02 1.16 16 12 C -0.13 -1.58 5.46 -26.73 -0.15 -1.73 16 13 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 14 N -0.52 -9.09 4.50 -244.37 -1.10 -10.18 16 15 C 0.02 0.39 8.96 60.06 0.54 0.92 16 16 C 0.05 0.85 5.45 -4.98 -0.03 0.82 16 17 C 0.44 10.75 7.47 -10.99 -0.08 10.66 16 18 O -0.58 -15.89 13.91 5.54 0.08 -15.81 16 19 N -0.57 -14.57 5.29 -10.96 -0.06 -14.63 16 20 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.80 6.80 -51.93 -0.35 0.45 16 31 H 0.22 0.11 8.06 -52.48 -0.42 -0.31 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.71 5.97 -51.93 -0.31 0.40 16 34 H 0.08 0.56 8.03 -51.93 -0.42 0.14 16 35 H 0.09 0.92 7.49 -51.93 -0.39 0.53 16 36 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 39 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 40 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 41 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 1.98 5.83 -51.93 -0.30 1.68 16 43 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 44 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 45 H 0.09 1.45 7.93 -51.93 -0.41 1.03 16 46 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -34.43 390.32 -6.38 -40.82 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.90 Total: 7.71 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -0.03 Total: 9.97 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.66 Total: -58.51 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.35 Total: -22.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.43 -6.38 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700194724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.140 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds