Wall clock time and date at job start Tue Mar 31 2020 21:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35308 * 128.04209 * 2 1 4 4 O 1.34017 * 106.67141 * 180.23680 * 3 2 1 5 5 N 1.20901 * 111.84286 * 359.74395 * 4 3 2 6 6 C 1.30987 * 111.44226 * 0.02562 * 5 4 3 7 7 C 1.48331 * 126.93891 * 179.97438 * 6 5 4 8 8 O 1.21494 * 119.99836 * 185.90887 * 7 6 5 9 9 N 1.34781 * 120.00157 * 5.90401 * 7 6 5 10 10 C 1.46508 * 119.99617 * 5.09832 * 9 7 6 11 11 C 1.46497 * 120.00297 * 185.36802 * 9 7 6 12 12 C 1.53005 * 109.47019 * 269.72887 * 11 9 7 13 13 C 1.53002 * 109.46717 * 179.97438 * 12 11 9 14 14 N 1.46900 * 109.46933 * 180.02562 * 13 12 11 15 15 C 1.46898 * 111.00250 * 66.04579 * 14 13 12 16 16 C 1.46903 * 111.00207 * 189.99995 * 14 13 12 17 17 C 1.50697 * 109.47329 * 169.99826 * 16 14 13 18 18 O 1.21298 * 119.99987 * 359.97438 * 17 16 14 19 19 N 1.34773 * 120.00035 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99895 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00308 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99793 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00188 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99840 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46939 * 60.00414 * 24 22 20 26 26 H 1.48507 * 109.47263 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47394 * 300.00472 * 24 22 20 28 28 H 1.08991 * 109.47308 * 270.16429 * 1 2 3 29 29 H 1.09000 * 109.46776 * 30.16907 * 1 2 3 30 30 H 1.09002 * 109.47013 * 150.16379 * 1 2 3 31 31 H 1.08006 * 126.66696 * 359.94456 * 3 2 1 32 32 H 1.08994 * 109.46996 * 275.63512 * 10 9 7 33 33 H 1.08997 * 109.46940 * 35.63812 * 10 9 7 34 34 H 1.09002 * 109.46615 * 155.63902 * 10 9 7 35 35 H 1.09000 * 109.46953 * 29.72648 * 11 9 7 36 36 H 1.09002 * 109.47285 * 149.72832 * 11 9 7 37 37 H 1.08994 * 109.47209 * 300.00088 * 12 11 9 38 38 H 1.08997 * 109.46811 * 60.00504 * 12 11 9 39 39 H 1.09000 * 109.47379 * 299.99837 * 13 12 11 40 40 H 1.09002 * 109.47160 * 60.00206 * 13 12 11 41 41 H 1.09007 * 109.46994 * 59.99885 * 15 14 13 42 42 H 1.08999 * 109.47389 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.47271 * 300.00297 * 15 14 13 44 44 H 1.08990 * 109.47128 * 290.00202 * 16 14 13 45 45 H 1.09001 * 109.46560 * 50.00112 * 16 14 13 46 46 H 0.97001 * 120.00064 * 0.02562 * 19 17 16 47 47 H 0.96994 * 119.99804 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0656 0.0000 4 8 3.5888 0.5773 -0.0053 5 7 3.5988 -0.6317 -0.0034 6 6 2.3836 -1.1206 0.0028 7 6 1.9991 -2.5532 0.0063 8 8 0.8303 -2.8687 -0.0963 9 7 2.9463 -3.5049 0.1231 10 6 4.3415 -3.1247 0.3586 11 6 2.5818 -4.9191 0.0087 12 6 2.2301 -5.4687 1.3927 13 6 1.8488 -6.9456 1.2730 14 7 1.5106 -7.4732 2.6017 15 6 0.2934 -6.8393 3.1256 16 6 1.3699 -8.9350 2.5675 17 6 1.2682 -9.4630 3.9753 18 8 1.3095 -8.6968 4.9148 19 7 1.1326 -10.7865 4.1906 20 6 1.0406 -11.2668 5.4714 21 1 1.0765 -10.5846 6.3079 22 6 0.9002 -12.6313 5.6932 23 7 0.8561 -13.4614 4.6754 24 14 0.7743 -13.2856 7.4383 25 1 -0.4108 -12.6898 8.1060 26 1 0.6326 -14.7635 7.4038 27 1 2.0013 -12.9239 8.1925 28 1 -0.3633 0.0029 1.0276 29 1 -0.3633 0.8885 -0.5165 30 1 -0.3633 -0.8915 -0.5113 31 1 2.0560 2.1075 -0.0008 32 1 4.8216 -2.8972 -0.5930 33 1 4.3748 -2.2455 1.0019 34 1 4.8658 -3.9489 0.8423 35 1 1.7206 -5.0201 -0.6519 36 1 3.4222 -5.4790 -0.4018 37 1 3.0912 -5.3678 2.0532 38 1 1.3897 -4.9090 1.8030 39 1 0.9875 -7.0462 0.6126 40 1 2.6889 -7.5057 0.8624 41 1 -0.5386 -7.0359 2.4493 42 1 0.0660 -7.2477 4.1103 43 1 0.4497 -5.7636 3.2061 44 1 0.4693 -9.2005 2.0140 45 1 2.2397 -9.3723 2.0774 46 1 1.1007 -11.3993 3.4393 47 1 0.7584 -14.4139 4.8303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700194724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:43 Heat of formation + Delta-G solvation = -15.685652 kcal Electronic energy + Delta-G solvation = -28605.214979 eV Core-core repulsion = 24405.343675 eV Total energy + Delta-G solvation = -4199.871304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.13531 -41.05082 -40.37358 -38.29834 -36.99002 -35.89400 -35.73518 -33.85391 -33.28193 -32.65166 -29.49605 -29.16975 -28.29722 -27.62627 -26.79937 -25.37606 -23.75430 -22.66220 -21.90665 -21.04602 -20.82597 -19.85027 -18.88701 -18.76712 -17.93497 -17.79962 -17.18159 -16.78075 -16.65130 -16.53505 -16.18577 -15.86580 -15.34418 -15.29574 -15.06445 -14.71591 -14.56535 -14.35869 -14.22456 -14.02042 -13.78236 -13.72652 -13.49795 -13.19923 -13.05933 -13.01923 -12.90381 -12.67354 -12.54949 -12.41964 -12.33455 -12.28067 -12.12134 -11.60991 -11.45792 -11.36759 -11.31207 -10.40176 -10.29822 -10.00076 -9.87561 -9.23159 -8.46114 -5.94815 0.04561 0.70163 1.39496 1.41060 1.52094 1.64658 1.95182 2.05718 2.25998 2.28840 2.74358 2.82257 3.20447 3.41407 3.46005 3.79066 3.91203 4.02763 4.08274 4.11708 4.19642 4.32545 4.35551 4.37038 4.44557 4.51321 4.54834 4.56982 4.60221 4.69355 4.74839 4.75875 4.80243 4.87458 4.92587 5.00363 5.10790 5.21760 5.31065 5.40450 5.41265 5.87993 6.05015 6.07485 6.19911 6.61449 6.76576 7.04606 7.13333 7.56865 8.13202 8.71032 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.001679 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.439414 B =16675.645102 C =16837.674872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.178 4.178 3 C -0.033 4.033 4 O 0.126 5.874 5 N -0.338 5.338 6 C -0.057 4.057 7 C 0.586 3.414 8 O -0.552 6.552 9 N -0.600 5.600 10 C 0.079 3.921 11 C 0.122 3.878 12 C -0.119 4.119 13 C 0.061 3.939 14 N -0.538 5.538 15 C 0.030 3.970 16 C 0.058 3.942 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.274 0.726 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.097 0.903 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.115 0.885 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.969 27.716 -16.398 32.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.183 4.183 3 C -0.113 4.113 4 O 0.050 5.950 5 N -0.038 5.038 6 C -0.214 4.214 7 C 0.372 3.628 8 O -0.429 6.429 9 N -0.332 5.332 10 C -0.063 4.063 11 C 0.000 4.000 12 C -0.158 4.158 13 C -0.067 4.067 14 N -0.263 5.263 15 C -0.118 4.118 16 C -0.073 4.073 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.197 1.197 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.290 0.710 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.115 0.885 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.969 27.290 -15.538 31.966 hybrid contribution -1.633 -0.983 0.162 1.913 sum 4.336 26.307 -15.376 30.778 Atomic orbital electron populations 1.20212 0.86081 1.04125 1.03268 1.21677 0.99867 0.90303 1.06470 1.26624 0.80485 1.02596 1.01621 1.84756 1.30701 1.14795 1.64792 1.74353 1.21032 0.92277 1.16165 1.23454 0.90790 0.96807 1.10337 1.17325 0.85114 0.83509 0.76812 1.90760 1.18631 1.82120 1.51384 1.47857 1.09243 1.06529 1.69587 1.22105 0.79502 1.02218 1.02469 1.21575 1.02819 0.78846 0.96781 1.21792 1.01556 0.94889 0.97543 1.22110 1.01125 0.95292 0.88138 1.61510 1.36279 1.03295 1.25168 1.22369 0.89786 0.99524 1.00106 1.21754 1.03283 0.89143 0.93161 1.20799 0.82117 0.82318 0.92002 1.90462 1.56429 1.57244 1.46100 1.41925 1.64611 1.06207 1.08403 1.19617 1.49326 0.92054 0.85317 0.90410 1.26035 0.96347 0.95478 1.03432 1.69667 1.49966 1.04250 1.32209 0.84992 0.78873 0.77283 0.77190 1.19815 1.19398 1.19736 0.90690 0.87854 0.92112 0.71036 0.91151 0.90935 0.88812 0.90438 0.86848 0.91331 0.93622 0.94002 0.88459 0.95585 0.92561 0.91334 0.91617 0.86709 0.76987 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.06 71.24 0.72 -0.35 16 2 C -0.18 -2.70 6.34 -19.54 -0.12 -2.82 16 3 C -0.03 -0.25 12.24 67.14 0.82 0.57 16 4 O 0.13 1.59 11.18 71.87 0.80 2.40 16 5 N -0.34 -6.05 8.96 -49.51 -0.44 -6.49 16 6 C -0.06 -1.18 6.80 42.96 0.29 -0.89 16 7 C 0.59 14.67 7.69 86.93 0.67 15.34 16 8 O -0.55 -16.81 14.94 -3.70 -0.06 -16.87 16 9 N -0.60 -12.45 2.87 -849.62 -2.44 -14.89 16 10 C 0.08 1.24 9.33 127.77 1.19 2.43 16 11 C 0.12 2.32 5.35 86.38 0.46 2.78 16 12 C -0.12 -2.80 5.46 30.60 0.17 -2.63 16 13 C 0.06 1.50 4.96 86.30 0.43 1.93 16 14 N -0.54 -18.41 4.50 -927.05 -4.17 -22.58 16 15 C 0.03 1.08 8.96 127.69 1.14 2.23 16 16 C 0.06 2.07 5.45 85.56 0.47 2.53 16 17 C 0.44 21.58 7.47 87.66 0.66 22.24 16 18 O -0.62 -35.04 13.91 -3.09 -0.04 -35.09 16 19 N -0.57 -30.08 5.29 -306.98 -1.62 -31.70 16 20 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 24 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 1.17 6.80 -2.39 -0.02 1.15 16 31 H 0.27 -1.09 8.06 -2.91 -0.02 -1.11 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.26 5.97 -2.39 -0.01 1.25 16 34 H 0.09 1.17 8.03 -2.39 -0.02 1.15 16 35 H 0.08 1.62 7.49 -2.39 -0.02 1.61 16 36 H 0.11 1.48 8.07 -2.39 -0.02 1.46 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.30 6.55 -2.39 -0.02 1.29 16 39 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 40 H 0.10 1.96 7.93 -2.39 -0.02 1.94 16 41 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.06 2.45 5.83 -2.39 -0.01 2.44 16 43 H 0.07 2.29 6.47 -2.39 -0.02 2.27 16 44 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 45 H 0.11 3.51 7.93 -2.39 -0.02 3.49 16 46 H 0.40 19.64 7.90 -92.71 -0.73 18.90 16 47 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -78.12 390.32 2.77 -75.34 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.27 Total: 29.52 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 8.17 Total: 24.65 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -8.40 Total: -125.54 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: 0.71 Total: -49.56 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -78.12 2.77 -75.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700194724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.656 kcal (2) G-P(sol) polarization free energy of solvation -78.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds