Wall clock time and date at job start Tue Mar 31 2020 22:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.46900 * 2 1 4 4 O 1.33492 * 126.82436 * 269.96646 * 3 2 1 5 5 N 1.20657 * 113.15656 * 180.02562 * 4 3 2 6 6 C 1.30022 * 112.30107 * 359.72118 * 5 4 3 7 7 C 1.37357 * 126.83252 * 89.99981 * 3 2 1 8 8 C 1.47402 * 128.56302 * 359.95431 * 7 3 2 9 9 O 1.21609 * 120.00016 * 0.02562 * 8 7 3 10 10 N 1.34774 * 119.99658 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99669 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47051 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.46505 * 64.99900 * 12 11 10 14 14 C 1.52997 * 109.47127 * 185.00029 * 12 11 10 15 15 N 1.46894 * 109.47224 * 305.00575 * 12 11 10 16 16 C 1.46902 * 110.99790 * 298.94884 * 15 12 11 17 17 C 1.46896 * 111.00342 * 175.00014 * 15 12 11 18 18 C 1.50695 * 109.47619 * 189.99958 * 17 15 12 19 19 O 1.21286 * 119.99843 * 359.97438 * 18 17 15 20 20 N 1.34776 * 120.00467 * 180.02562 * 18 17 15 21 21 C 1.37089 * 120.00385 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00257 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00040 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99986 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47170 * 90.00302 * 25 23 21 27 27 H 1.48502 * 109.47482 * 210.00611 * 25 23 21 28 28 H 1.48509 * 109.47017 * 330.00300 * 25 23 21 29 29 H 1.09004 * 109.47062 * 60.00580 * 1 2 3 30 30 H 1.09006 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47416 * 300.00305 * 1 2 3 32 32 H 1.08996 * 109.47224 * 239.99320 * 2 1 3 33 33 H 1.09004 * 109.47062 * 119.99420 * 2 1 3 34 34 H 1.07994 * 127.33673 * 180.29970 * 6 5 4 35 35 H 0.96996 * 120.00429 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.46773 * 60.00404 * 11 10 8 37 37 H 1.09000 * 109.47434 * 300.00313 * 11 10 8 38 38 H 1.09002 * 109.47153 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46832 * 60.00321 * 14 12 11 40 40 H 1.09004 * 109.47261 * 300.00303 * 14 12 11 41 41 H 1.09003 * 109.46808 * 60.00632 * 16 15 12 42 42 H 1.09004 * 109.47176 * 180.02562 * 16 15 12 43 43 H 1.08994 * 109.47263 * 300.00333 * 16 15 12 44 44 H 1.09006 * 109.46837 * 310.00141 * 17 15 12 45 45 H 1.09003 * 109.47200 * 69.99229 * 17 15 12 46 46 H 0.97011 * 119.99567 * 359.97438 * 20 18 17 47 47 H 0.96997 * 120.00137 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2995 2.1750 -1.0686 5 7 2.6906 3.2802 -0.7835 6 6 2.7498 3.4663 0.5020 7 6 2.3067 2.1972 1.0994 8 6 2.1819 1.8471 2.5258 9 8 1.7907 0.7418 2.8486 10 7 2.5014 2.7519 3.4721 11 6 2.3769 2.4041 4.8898 12 6 2.7998 3.5989 5.7471 13 1 2.1039 4.4230 5.5901 14 6 2.7893 3.1966 7.2232 15 7 4.1536 4.0215 5.3643 16 6 5.1246 2.9417 5.5862 17 6 4.5479 5.2400 6.0836 18 6 5.8254 5.7801 5.4945 19 8 6.3556 5.2061 4.5668 20 7 6.3795 6.9004 5.9989 21 6 7.5419 7.3914 5.4633 22 1 8.0141 6.8803 4.6372 23 6 8.1128 8.5467 5.9831 24 7 7.5387 9.1683 6.9885 25 14 9.6972 9.2154 5.2537 26 1 9.3756 10.1650 4.1581 27 1 10.4693 9.9198 6.3086 28 1 10.5062 8.0929 4.7143 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0601 4.3613 1.0207 35 1 2.8131 3.6336 3.2146 36 1 3.0192 1.5522 5.1126 37 1 1.3412 2.1461 5.1111 38 1 3.0901 4.0478 7.8339 39 1 3.4852 2.3724 7.3801 40 1 1.7847 2.8830 7.5072 41 1 4.8467 2.0745 4.9872 42 1 6.1186 3.2814 5.2951 43 1 5.1290 2.6682 6.6413 44 1 3.7602 5.9878 5.9906 45 1 4.7039 5.0058 7.1367 46 1 5.9556 7.3593 6.7411 47 1 7.9374 9.9746 7.3516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700474994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:11 Heat of formation + Delta-G solvation = -7.542976 kcal Electronic energy + Delta-G solvation = -29518.068013 eV Core-core repulsion = 25318.549801 eV Total energy + Delta-G solvation = -4199.518212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.05406 -39.86331 -38.86265 -37.35449 -35.01319 -34.39996 -33.94056 -33.60511 -31.32676 -31.06934 -30.40857 -28.00913 -26.91870 -25.45431 -24.60982 -24.22238 -23.73207 -21.62404 -20.51893 -19.89375 -19.11777 -18.05391 -17.87787 -17.81530 -16.73013 -16.49880 -16.12407 -15.62094 -15.04526 -14.92687 -14.75583 -14.68250 -14.56183 -14.11468 -13.87989 -13.70071 -13.54172 -13.22508 -13.05672 -12.90248 -12.78930 -12.32721 -12.14239 -11.87742 -11.81054 -11.78457 -11.49025 -11.26687 -11.25393 -11.15764 -10.96973 -10.79890 -10.53448 -10.42440 -10.25423 -10.17577 -9.65506 -9.51194 -9.07112 -8.52639 -8.02656 -7.91763 -6.45570 -3.86350 0.90987 1.68398 2.61110 3.09485 3.15040 3.16146 3.24193 3.29580 3.85300 3.89650 4.13545 4.14599 4.21739 4.43367 4.62672 4.73764 4.88574 4.89147 4.99853 5.07347 5.12772 5.16436 5.21681 5.39519 5.44016 5.46765 5.51411 5.54108 5.65428 5.69618 5.73001 5.76713 5.84792 5.86825 5.89667 5.94152 6.11679 6.23012 6.35633 6.52753 7.16409 7.28345 7.46380 7.51620 8.02329 8.02576 8.11142 8.57507 9.14461 9.50388 10.01885 10.72068 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.002548 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.575976 B =10988.304963 C =12616.892521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.047 3.953 4 O 0.090 5.910 5 N -0.355 5.355 6 C 0.029 3.971 7 C -0.260 4.260 8 C 0.598 3.402 9 O -0.544 6.544 10 N -0.703 5.703 11 C 0.133 3.867 12 C 0.063 3.937 13 H 0.089 0.911 14 C -0.186 4.186 15 N -0.511 5.511 16 C 0.016 3.984 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.578 6.578 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.204 0.796 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.020 0.980 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.285 -14.436 -5.395 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.018 4.018 4 O 0.031 5.969 5 N -0.060 5.060 6 C -0.154 4.154 7 C -0.268 4.268 8 C 0.384 3.616 9 O -0.424 6.424 10 N -0.354 5.354 11 C 0.009 3.991 12 C -0.047 4.047 13 H 0.107 0.893 14 C -0.245 4.245 15 N -0.235 5.235 16 C -0.132 4.132 17 C -0.087 4.087 18 C 0.228 3.772 19 O -0.462 6.462 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.221 0.779 35 H 0.249 0.751 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.039 0.961 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.862 -14.562 -7.258 22.036 hybrid contribution 0.735 1.001 1.835 2.216 sum -14.127 -13.560 -5.423 20.319 Atomic orbital electron populations 1.21704 0.92960 1.02940 1.02588 1.20369 0.97127 0.85594 1.05539 1.24889 0.95475 0.96089 0.85301 1.84582 1.61232 1.17723 1.33352 1.73677 1.16380 0.98326 1.17656 1.26508 1.00000 0.99406 0.89439 1.22080 1.13978 0.95354 0.95363 1.16756 0.77370 0.84329 0.83145 1.90762 1.47765 1.21508 1.82345 1.45625 1.66556 1.17423 1.05798 1.21426 1.01171 0.97218 0.79333 1.22057 0.92302 0.97239 0.93078 0.89278 1.22400 1.02649 1.02615 0.96858 1.61828 1.00722 1.04403 1.56531 1.22603 0.98663 0.93686 0.98206 1.21879 0.98098 0.92730 0.95989 1.19724 0.87050 0.83607 0.86797 1.90490 1.64695 1.60127 1.30892 1.41872 1.23272 1.22869 1.32022 1.19680 0.99852 1.07487 1.15788 0.87938 1.25257 0.99713 0.96607 0.96347 1.69603 1.40505 1.19534 1.24639 0.85872 0.81120 0.79015 0.78375 1.20380 1.20937 1.19436 0.92370 0.91034 0.91816 0.89265 0.86815 0.77943 0.75105 0.91123 0.90984 0.91607 0.91773 0.91868 0.92100 0.88606 0.96111 0.89466 0.93144 0.77531 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.89 37.16 0.37 -0.67 16 2 C -0.05 -0.39 6.05 -27.89 -0.17 -0.56 16 3 C 0.05 0.51 6.80 -34.63 -0.24 0.27 16 4 O 0.09 1.07 11.06 18.65 0.21 1.27 16 5 N -0.35 -4.62 12.01 31.81 0.38 -4.24 16 6 C 0.03 0.35 11.95 -14.72 -0.18 0.17 16 7 C -0.26 -3.12 6.47 -102.89 -0.67 -3.78 16 8 C 0.60 7.60 7.81 -12.53 -0.10 7.50 16 9 O -0.54 -7.88 15.24 5.27 0.08 -7.80 16 10 N -0.70 -8.12 5.38 -61.39 -0.33 -8.45 16 11 C 0.13 1.42 4.69 -4.04 -0.02 1.40 16 12 C 0.06 0.67 2.50 -67.71 -0.17 0.50 16 13 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 14 C -0.19 -1.76 8.50 37.16 0.32 -1.44 16 15 N -0.51 -7.27 3.93 -236.33 -0.93 -8.20 16 16 C 0.02 0.24 8.45 60.07 0.51 0.75 16 17 C 0.04 0.71 4.89 -4.98 -0.02 0.68 16 18 C 0.44 9.77 7.47 -10.99 -0.08 9.69 16 19 O -0.58 -14.62 13.91 5.55 0.08 -14.55 16 20 N -0.56 -13.69 5.29 -10.97 -0.06 -13.74 16 21 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 22 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 25 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.11 1.05 6.78 -51.93 -0.35 0.70 16 34 H 0.20 2.01 7.88 -52.49 -0.41 1.59 16 35 H 0.41 4.70 7.50 -40.82 -0.31 4.40 16 36 H 0.07 0.82 6.70 -51.93 -0.35 0.47 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.65 6.75 -51.93 -0.35 0.30 16 39 H 0.06 0.63 6.39 -51.93 -0.33 0.30 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 42 H 0.10 1.81 5.82 -51.93 -0.30 1.51 16 43 H 0.02 0.28 6.28 -51.93 -0.33 -0.05 16 44 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 45 H 0.05 0.75 6.94 -51.93 -0.36 0.39 16 46 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -31.67 387.14 -6.35 -38.02 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.63 Total: 12.64 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.69 Total: 6.78 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.21 Total: -57.94 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.36 Total: -21.07 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.67 -6.35 -38.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700474994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.481 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds